Wall clock time and date at job start Wed Apr 1 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.51479 * 2 1 4 4 C 1.53297 * 109.50941 * 120.09541 * 2 1 3 5 5 N 1.47160 * 108.47136 * 172.82905 * 4 2 1 6 6 S 1.65595 * 121.04100 * 128.90345 * 5 4 2 7 7 O 1.42104 * 104.27939 * 26.05564 * 6 5 4 8 8 O 1.42108 * 104.27824 * 153.90611 * 6 5 4 9 9 C 1.81400 * 104.45417 * 269.98025 * 6 5 4 10 10 C 1.52998 * 109.47232 * 172.59510 * 9 6 5 11 11 C 1.50701 * 115.55127 * 65.15962 * 10 9 6 12 12 H 1.08005 * 119.99633 * 264.81312 * 11 10 9 13 13 C 1.37868 * 120.00255 * 84.81091 * 11 10 9 14 14 N 1.31520 * 119.99990 * 352.62727 * 13 11 10 15 15 Si 1.86800 * 120.00121 * 172.62238 * 13 11 10 16 16 H 1.48499 * 109.47156 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47136 * 120.00436 * 15 13 11 18 18 H 1.48505 * 109.47220 * 240.00387 * 15 13 11 19 19 C 1.53001 * 117.49770 * 279.48604 * 10 9 6 20 20 C 1.52999 * 117.49749 * 210.82750 * 10 9 6 21 21 C 1.47265 * 117.91625 * 308.88480 * 5 4 2 22 22 C 1.52644 * 108.45622 * 49.49844 * 21 5 4 23 23 C 1.53964 * 110.18843 * 72.10930 * 22 21 5 24 24 C 1.54621 * 103.88446 * 118.23165 * 23 22 21 25 25 O 1.44472 * 104.81952 * 23.87491 * 24 23 22 26 26 C 1.44548 * 105.36404 * 319.84066 * 25 24 23 27 27 O 1.42208 * 110.86531 * 309.51379 * 22 21 5 28 28 H 1.09000 * 109.47360 * 299.90617 * 1 2 3 29 29 H 1.09007 * 109.47010 * 59.90568 * 1 2 3 30 30 H 1.08998 * 109.47448 * 179.89915 * 1 2 3 31 31 H 1.09007 * 109.63319 * 53.13857 * 4 2 1 32 32 H 1.08993 * 109.80796 * 292.62609 * 4 2 1 33 33 H 1.09007 * 109.46871 * 292.59636 * 9 6 5 34 34 H 1.08997 * 109.47092 * 52.59202 * 9 6 5 35 35 H 0.97003 * 119.99703 * 185.02706 * 14 13 11 36 36 H 1.08995 * 117.49789 * 0.02562 * 19 10 9 37 37 H 1.08999 * 117.49732 * 145.02162 * 19 10 9 38 38 H 1.09000 * 117.49948 * 214.97925 * 20 10 9 39 39 H 1.09007 * 117.50002 * 359.97438 * 20 10 9 40 40 H 1.09003 * 109.63996 * 289.80987 * 21 5 4 41 41 H 1.08995 * 109.63890 * 169.18605 * 21 5 4 42 42 H 1.09004 * 110.54444 * 236.82685 * 23 22 21 43 43 H 1.08995 * 110.55074 * 359.62770 * 23 22 21 44 44 H 1.09001 * 110.36924 * 265.03782 * 24 23 22 45 45 H 1.09004 * 110.45708 * 142.75770 * 24 23 22 46 46 H 1.09000 * 110.38942 * 281.21008 * 26 25 24 47 47 H 1.08994 * 110.39660 * 158.81584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7246 1.2502 5 7 3.5030 -0.8638 1.1429 6 16 4.4989 -0.3895 2.3780 7 8 3.6888 -0.4931 3.5409 8 8 5.6601 -1.1934 2.2202 9 6 4.8736 1.3480 2.0158 10 6 5.6430 1.9591 3.1885 11 6 7.0116 1.3804 3.4400 12 1 7.1397 0.5940 4.1691 13 6 8.1001 1.8549 2.7395 14 7 7.9264 2.7064 1.7523 15 14 9.8216 1.2885 3.1925 16 1 9.7462 0.3365 4.3296 17 1 10.4446 0.6156 2.0245 18 1 10.6423 2.4629 3.5830 19 6 4.8334 2.4129 4.4049 20 6 5.4459 3.4515 3.4618 21 6 4.0516 -1.4384 -0.0971 22 6 3.4245 -0.7130 -1.2847 23 6 3.9912 0.7143 -1.3951 24 6 4.6891 0.7307 -2.7747 25 8 4.0329 -0.3092 -3.5332 26 6 3.8360 -1.3966 -2.6014 27 8 2.0078 -0.6775 -1.1659 28 1 -0.3634 0.5124 0.8908 29 1 -0.3633 0.5153 -0.8892 30 1 -0.3634 -1.0276 -0.0018 31 1 1.5837 -1.7115 1.3149 32 1 1.7934 -0.1463 2.1400 33 1 5.4804 1.4081 1.1122 34 1 3.9437 1.8966 1.8660 35 1 8.6831 2.9841 1.2126 36 1 3.7527 2.2757 4.3697 37 1 5.2908 2.2932 5.3870 38 1 6.3060 4.0147 3.8240 39 1 4.7683 3.9981 2.8059 40 1 3.8099 -2.5001 -0.1471 41 1 5.1332 -1.3046 -0.1156 42 1 3.1864 1.4488 -1.3648 43 1 4.7121 0.9023 -0.5995 44 1 5.7506 0.5084 -2.6656 45 1 4.5525 1.6975 -3.2593 46 1 4.7631 -1.9537 -2.4665 47 1 3.0424 -2.0571 -2.9506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333026605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:41 Heat of formation + Delta-G solvation = -148.869155 kcal Electronic energy + Delta-G solvation = -31294.107541 eV Core-core repulsion = 27183.434895 eV Total energy + Delta-G solvation = -4110.672647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64989 -38.98613 -38.60969 -38.09061 -36.90596 -35.90289 -34.25346 -34.10917 -31.66115 -30.17153 -29.85735 -27.68828 -27.54246 -25.76666 -24.02925 -23.01872 -22.93668 -21.48366 -20.71097 -19.83384 -18.72613 -18.42004 -18.27796 -17.43144 -17.19660 -16.87777 -16.72717 -16.55859 -16.23695 -15.76194 -15.58336 -15.48484 -15.07820 -14.93851 -14.72541 -13.84122 -13.81513 -13.72335 -13.60006 -13.30826 -13.19233 -13.17710 -13.11584 -12.97333 -12.88604 -12.71482 -12.61183 -12.48698 -12.45791 -12.33663 -12.26489 -12.02499 -11.92552 -11.68853 -11.36034 -11.18343 -10.90105 -10.78208 -10.56804 -10.04376 -9.71860 -8.22135 -6.36795 -0.66670 1.34918 1.39088 1.49429 1.74662 2.37396 2.46617 2.89809 2.93382 3.03658 3.17343 3.36192 3.44508 3.54879 3.69476 3.77036 3.89151 3.96303 4.05546 4.11627 4.21891 4.25656 4.30443 4.33428 4.46467 4.49515 4.54551 4.56450 4.68408 4.74434 4.78278 4.79549 4.83226 4.87435 4.94021 4.95869 5.00331 5.12203 5.19108 5.31348 5.41301 5.47614 5.57047 5.68948 5.71477 6.19431 6.19734 6.69252 7.35925 8.84788 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.004879 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.545975 B = 5737.188443 C = 6708.687508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.068 0.932 4 C 0.086 3.914 5 N -1.005 6.005 6 S 2.615 3.385 7 O -0.986 6.986 8 O -0.987 6.987 9 C -0.547 4.547 10 C 0.011 3.989 11 C -0.535 4.535 12 H 0.046 0.954 13 C 0.046 3.954 14 N -0.888 5.888 15 Si 0.932 3.068 16 H -0.275 1.275 17 H -0.275 1.275 18 H -0.272 1.272 19 C -0.196 4.196 20 C -0.136 4.136 21 C 0.099 3.901 22 C 0.081 3.919 23 C -0.188 4.188 24 C 0.046 3.954 25 O -0.385 6.385 26 C 0.060 3.940 27 O -0.361 6.361 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 -3.791 -8.638 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 H 0.086 0.914 4 C -0.039 4.039 5 N -0.843 5.843 6 S 2.715 3.285 7 O -0.976 6.976 8 O -0.977 6.977 9 C -0.680 4.680 10 C 0.009 3.991 11 C -0.573 4.573 12 H 0.064 0.936 13 C -0.157 4.157 14 N -0.524 5.524 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.200 1.200 18 H -0.197 1.197 19 C -0.233 4.233 20 C -0.175 4.175 21 C -0.026 4.026 22 C 0.039 3.961 23 C -0.225 4.225 24 C -0.031 4.031 25 O -0.304 6.304 26 C -0.018 4.018 27 O -0.280 6.280 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.306 -4.316 -8.369 16.300 hybrid contribution 1.560 0.536 0.397 1.697 sum -11.745 -3.780 -7.972 14.690 Atomic orbital electron populations 1.21753 0.90055 1.03917 1.03916 1.22704 0.96905 0.95473 0.84091 0.91447 1.22373 0.78261 1.03346 0.99934 1.57963 1.16886 1.77533 1.31937 1.04765 0.72483 0.78088 0.73200 1.93456 1.69020 1.87456 1.47677 1.93479 1.51030 1.67439 1.85743 1.29946 1.08100 1.21330 1.08607 1.18399 0.93561 0.96301 0.90863 1.20701 0.91713 1.20985 1.23875 0.93601 1.25461 1.01686 0.94011 0.94534 1.70014 1.32160 1.32111 1.18138 0.85899 0.81094 0.78487 0.78764 1.19919 1.20033 1.19696 1.23244 0.98658 1.06118 0.95328 1.22507 1.00825 0.92196 1.01966 1.22069 0.98951 0.99130 0.82462 1.22710 0.82666 0.94959 0.95791 1.23639 1.01835 0.97797 0.99259 1.23493 0.96457 0.92836 0.90289 1.89145 1.79996 1.27041 1.34191 1.23445 1.02484 0.90134 0.85694 1.87852 1.18946 1.77660 1.43523 0.88942 0.91060 0.91069 0.89282 0.87867 0.85759 0.85175 0.92468 0.88218 0.90051 0.91567 0.89287 0.88649 0.88925 0.88984 0.90640 0.91456 0.87616 0.88846 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.57 71.98 0.69 -1.30 16 2 C 0.07 1.35 3.11 30.69 0.10 1.44 16 3 H 0.07 1.35 6.54 -2.39 -0.02 1.34 16 4 C 0.09 1.99 5.78 86.35 0.50 2.49 16 5 N -1.01 -29.34 3.17 -512.50 -1.62 -30.96 16 6 S 2.62 102.64 5.14 -56.49 -0.29 102.35 16 7 O -0.99 -41.47 16.81 -127.65 -2.15 -43.61 16 8 O -0.99 -46.44 16.57 -127.65 -2.12 -48.55 16 9 C -0.55 -21.47 5.64 71.98 0.41 -21.06 16 10 C 0.01 0.51 1.32 -52.93 -0.07 0.44 16 11 C -0.54 -28.99 8.24 25.60 0.21 -28.78 16 12 H 0.05 2.61 7.83 -2.91 -0.02 2.59 16 13 C 0.05 2.48 5.38 84.65 0.46 2.94 16 14 N -0.89 -47.21 12.97 21.44 0.28 -46.93 16 15 Si 0.93 43.11 29.55 68.60 2.03 45.14 16 16 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C -0.20 -8.13 9.96 30.62 0.30 -7.83 16 20 C -0.14 -5.85 9.48 30.62 0.29 -5.56 16 21 C 0.10 2.60 4.82 86.11 0.42 3.02 16 22 C 0.08 1.88 1.04 -10.26 -0.01 1.87 16 23 C -0.19 -4.55 5.79 31.47 0.18 -4.37 16 24 C 0.05 1.05 7.65 72.53 0.55 1.61 16 25 O -0.38 -9.54 11.65 -148.98 -1.74 -11.27 16 26 C 0.06 1.24 6.92 72.31 0.50 1.74 16 27 O -0.36 -8.25 9.83 -148.98 -1.46 -9.72 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.10 2.30 7.21 -2.39 -0.02 2.29 16 33 H 0.12 5.13 6.62 -2.39 -0.02 5.11 16 34 H 0.13 4.09 8.09 -2.39 -0.02 4.07 16 35 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 36 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.09 2.63 7.17 -2.39 -0.02 2.62 16 42 H 0.09 2.10 6.66 -2.39 -0.02 2.09 16 43 H 0.08 2.06 5.68 -2.39 -0.01 2.05 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.09 1.67 7.84 -2.39 -0.02 1.65 16 47 H 0.12 2.13 8.07 -2.39 -0.02 2.11 16 Total: -1.00 -68.04 381.29 -1.59 -69.63 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.96 Total: 27.29 kcal Atomic # 6 Polarization: -57.89 SS G_CDS: 4.52 Total: -53.36 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -1.35 Total: -77.89 kcal Atomic # 8 Polarization: -105.70 SS G_CDS: -7.46 Total: -113.16 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 102.64 SS G_CDS: -0.29 Total: 102.35 kcal Total: -68.04 -1.59 -69.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333026605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.241 kcal (2) G-P(sol) polarization free energy of solvation -68.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds