Wall clock time and date at job start Wed Apr 1 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.47133 * 2 1 4 4 C 1.34229 * 116.99686 * 184.91830 * 3 2 1 5 5 O 1.20821 * 120.00242 * 5.07355 * 4 3 2 6 6 C 1.50701 * 119.99952 * 185.07295 * 4 3 2 7 7 C 1.52993 * 109.47207 * 186.39504 * 6 4 3 8 8 S 1.81398 * 115.55365 * 65.12892 * 7 6 4 9 9 O 1.42104 * 110.54273 * 63.04267 * 8 7 6 10 10 O 1.42106 * 110.54396 * 286.29535 * 8 7 6 11 11 N 1.65598 * 104.45179 * 174.66803 * 8 7 6 12 12 C 1.46497 * 120.00256 * 273.83429 * 11 8 7 13 13 C 1.50698 * 109.47487 * 263.67343 * 12 11 8 14 14 H 1.08004 * 119.99787 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00304 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00521 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99933 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46885 * 89.99716 * 17 15 13 19 19 H 1.48500 * 109.47169 * 209.99997 * 17 15 13 20 20 H 1.48500 * 109.46810 * 330.00002 * 17 15 13 21 21 C 1.46503 * 119.99799 * 93.83724 * 11 8 7 22 22 C 1.53002 * 109.47004 * 96.26688 * 21 11 8 23 23 C 1.53000 * 117.51748 * 116.28667 * 22 21 11 24 24 C 1.52997 * 59.99952 * 107.47820 * 23 22 21 25 25 C 1.52998 * 117.49967 * 210.80066 * 7 6 4 26 26 C 1.53004 * 117.49865 * 279.45845 * 7 6 4 27 27 H 1.09005 * 109.46886 * 300.00455 * 1 2 3 28 28 H 1.09003 * 109.46825 * 59.99761 * 1 2 3 29 29 H 1.09003 * 109.47516 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46858 * 239.99884 * 2 1 3 31 31 H 1.09000 * 109.46698 * 119.99717 * 2 1 3 32 32 H 1.09000 * 109.47249 * 66.38949 * 6 4 3 33 33 H 1.09001 * 109.47025 * 306.39067 * 6 4 3 34 34 H 1.09000 * 109.47191 * 23.67591 * 12 11 8 35 35 H 1.09005 * 109.47118 * 143.66875 * 12 11 8 36 36 H 0.96991 * 120.00160 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47180 * 336.26849 * 21 11 8 38 38 H 1.08993 * 109.47022 * 216.26617 * 21 11 8 39 39 H 1.08995 * 115.55269 * 330.58171 * 22 21 11 40 40 H 1.09004 * 117.49899 * 214.97236 * 23 22 21 41 41 H 1.08995 * 117.49917 * 359.97438 * 23 22 21 42 42 H 1.09001 * 117.49768 * 252.50660 * 24 23 22 43 43 H 1.09001 * 117.49542 * 107.49721 * 24 23 22 44 44 H 1.09002 * 117.50405 * 215.00072 * 25 7 6 45 45 H 1.08997 * 117.49746 * 0.02562 * 25 7 6 46 46 H 1.08997 * 117.49603 * 359.97438 * 26 7 6 47 47 H 1.09001 * 117.50091 * 144.99603 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3406 1.5462 -0.1025 5 8 4.0651 0.5960 -0.2814 6 6 3.9264 2.9305 0.0055 7 6 5.4240 2.8760 -0.3026 8 16 5.8571 2.4026 -1.9994 9 8 5.3652 3.3616 -2.9256 10 8 5.6409 1.0125 -2.1999 11 7 7.5027 2.5743 -2.0690 12 6 8.0903 3.8772 -2.3902 13 6 8.4113 3.9347 -3.8615 14 1 8.1984 3.0857 -4.4942 15 6 8.9758 5.0715 -4.4000 16 7 9.2554 5.1219 -5.6841 17 14 9.3434 6.5402 -3.3058 18 1 10.7181 6.4173 -2.7578 19 1 9.2376 7.7894 -4.1018 20 1 8.3667 6.5814 -2.1879 21 6 8.3708 1.4230 -1.8096 22 6 8.7755 0.7799 -3.1376 23 6 10.2601 0.7954 -3.5072 24 6 9.5925 -0.5122 -3.0768 25 6 6.3272 3.8919 0.3997 26 6 6.3598 2.4200 0.8187 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7769 3.3105 1.0161 33 1 3.4326 3.5906 -0.7076 34 1 7.3811 4.6668 -2.1419 35 1 9.0047 4.0155 -1.8131 36 1 9.6528 5.9215 -6.0629 37 1 7.8355 0.6941 -1.2012 38 1 9.2637 1.7536 -1.2791 39 1 8.0540 0.8814 -3.9483 40 1 10.5153 0.9072 -4.5610 41 1 10.9488 1.2641 -2.8044 42 1 9.8420 -0.9040 -2.0907 43 1 9.4086 -1.2608 -3.8474 44 1 7.1815 4.2758 -0.1578 45 1 5.8544 4.5987 1.0815 46 1 5.9085 2.1592 1.7759 47 1 7.2356 1.8355 0.5368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346444135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:01 Heat of formation + Delta-G solvation = -90.454812 kcal Electronic energy + Delta-G solvation = -30333.865408 eV Core-core repulsion = 26225.725797 eV Total energy + Delta-G solvation = -4108.139611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60492 -37.98847 -37.38123 -36.57509 -36.28624 -35.22516 -34.69872 -32.29318 -32.06927 -29.99537 -28.39881 -25.49420 -23.89539 -22.74965 -22.39769 -21.82494 -21.73148 -20.88951 -20.21760 -18.10593 -17.76796 -17.17876 -17.01746 -16.61564 -16.52404 -15.86564 -15.73364 -14.80844 -14.63869 -14.54347 -14.23176 -13.78427 -13.51640 -13.42017 -13.31835 -12.99471 -12.80055 -12.59260 -12.36774 -12.06122 -12.00729 -11.78853 -11.76579 -11.62183 -11.34227 -11.21393 -11.18079 -11.12684 -10.93078 -10.83151 -10.67129 -10.60999 -10.52146 -10.36548 -10.13514 -10.02410 -9.74528 -9.47055 -9.19936 -8.53144 -8.10491 -6.00848 -3.97908 0.80583 2.11477 2.41313 3.20370 3.26863 3.29783 3.32789 3.38201 4.21290 4.36124 4.41967 4.45283 4.52165 4.53921 4.68780 4.71953 4.79514 5.05776 5.07153 5.10755 5.20029 5.29251 5.31464 5.38608 5.40997 5.46367 5.49296 5.54727 5.57842 5.69882 5.72513 5.79251 5.89874 5.96200 6.09028 6.24849 6.32811 6.38777 6.53414 6.65663 6.70964 6.93201 7.05928 7.40513 7.63807 7.65594 8.57441 9.08545 9.58164 11.12895 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.004060 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.388693 B = 6895.565525 C = 7805.526681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.361 6.361 4 C 0.435 3.565 5 O -0.464 6.464 6 C -0.058 4.058 7 C -0.657 4.657 8 S 2.631 3.369 9 O -0.935 6.935 10 O -0.937 6.937 11 N -0.976 5.976 12 C 0.224 3.776 13 C -0.514 4.514 14 H 0.082 0.918 15 C 0.071 3.929 16 N -0.896 5.896 17 Si 0.867 3.133 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.165 3.835 22 C -0.142 4.142 23 C -0.160 4.160 24 C -0.193 4.193 25 C -0.120 4.120 26 C -0.110 4.110 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -6.988 16.867 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.279 6.279 4 C 0.275 3.725 5 O -0.348 6.348 6 C -0.097 4.097 7 C -0.742 4.742 8 S 2.718 3.282 9 O -0.925 6.925 10 O -0.927 6.927 11 N -0.814 5.814 12 C 0.101 3.899 13 C -0.554 4.554 14 H 0.100 0.900 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.694 3.306 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.190 1.190 21 C 0.039 3.961 22 C -0.161 4.161 23 C -0.197 4.197 24 C -0.231 4.231 25 C -0.158 4.158 26 C -0.147 4.147 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.001 -7.445 16.014 20.295 hybrid contribution 0.314 1.015 0.929 1.412 sum -9.686 -6.429 16.943 20.548 Atomic orbital electron populations 1.21815 0.92659 1.02969 1.03511 1.23068 0.95298 0.80141 1.02990 1.86465 1.24621 1.32594 1.84183 1.23776 0.81087 0.92834 0.74758 1.90864 1.60165 1.42537 1.41244 1.20514 0.90445 0.91991 1.06735 1.32337 0.98842 1.18556 1.24441 1.04595 0.73850 0.74621 0.75106 1.93635 1.79443 1.63836 1.55572 1.93598 1.84415 1.31092 1.83572 1.57295 1.22994 1.17251 1.83830 1.19521 0.93803 0.78527 0.98041 1.21334 1.40140 1.02224 0.91668 0.89951 1.24853 0.95426 0.97950 0.94814 1.69884 1.43488 1.28764 1.11409 0.87011 0.78967 0.83384 0.81276 1.20186 1.21027 1.19007 1.20677 0.94360 0.86170 0.94854 1.22567 0.95116 0.98489 0.99977 1.22841 0.95709 0.99077 1.02090 1.22960 1.06468 0.91584 1.02098 1.23063 0.99101 0.92484 1.01106 1.22751 0.98447 0.97544 0.95982 0.91578 0.91351 0.90213 0.90637 0.91245 0.86315 0.86512 0.94988 0.95394 0.92724 0.90668 0.90925 0.87629 0.89051 0.89236 0.89487 0.89479 0.86174 0.87216 0.87691 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.61 6.28 37.16 0.23 0.84 16 3 O -0.36 -4.52 10.22 -39.26 -0.40 -4.92 16 4 C 0.44 6.18 7.76 36.01 0.28 6.46 16 5 O -0.46 -7.95 13.26 -25.97 -0.34 -8.30 16 6 C -0.06 -0.70 5.72 -27.89 -0.16 -0.86 16 7 C -0.66 -9.38 1.74 -90.62 -0.16 -9.54 16 8 S 2.63 52.51 5.09 -107.50 -0.55 51.96 16 9 O -0.93 -22.43 17.11 -57.54 -0.98 -23.41 16 10 O -0.94 -20.39 14.58 -66.24 -0.97 -21.36 16 11 N -0.98 -19.29 1.99 -115.66 -0.23 -19.52 16 12 C 0.22 5.01 2.73 -5.20 -0.01 5.00 16 13 C -0.51 -14.21 9.45 -34.44 -0.33 -14.53 16 14 H 0.08 2.52 7.18 -52.48 -0.38 2.15 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 17 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 21 C 0.17 2.86 4.73 -4.04 -0.02 2.84 16 22 C -0.14 -2.68 5.00 -90.62 -0.45 -3.13 16 23 C -0.16 -2.80 10.18 -26.73 -0.27 -3.07 16 24 C -0.19 -2.99 10.25 -26.73 -0.27 -3.27 16 25 C -0.12 -1.41 9.71 -26.70 -0.26 -1.67 16 26 C -0.11 -1.26 9.69 -26.69 -0.26 -1.51 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.86 7.97 -51.93 -0.41 0.44 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.12 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.03 0.72 5.97 -51.93 -0.31 0.41 16 35 H 0.03 0.58 7.46 -51.93 -0.39 0.19 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.08 1.17 6.84 -51.93 -0.36 0.82 16 38 H 0.07 1.09 7.77 -51.93 -0.40 0.69 16 39 H 0.11 2.33 7.79 -51.93 -0.40 1.92 16 40 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.09 1.46 8.03 -51.93 -0.42 1.05 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.12 1.57 5.54 -51.93 -0.29 1.28 16 45 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.11 1.25 6.51 -51.93 -0.34 0.91 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -36.14 392.33 -10.36 -46.51 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.51 Total: 4.98 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.40 Total: -21.23 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.54 Total: -46.02 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -2.70 Total: -57.99 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -0.55 Total: 51.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.14 -10.36 -46.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346444135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.949 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds