Wall clock time and date at job start Wed Apr 1 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00183 * 2 1 4 4 O 1.20823 * 120.00035 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99914 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.52019 * 299.86791 * 5 3 2 7 7 C 1.53114 * 109.52562 * 59.99748 * 5 3 2 8 8 C 1.53030 * 109.28052 * 62.31272 * 7 5 3 9 9 N 1.46850 * 109.52505 * 59.17894 * 8 7 5 10 10 C 1.46900 * 111.00261 * 174.15969 * 9 8 7 11 11 C 1.52995 * 109.46852 * 65.37851 * 10 9 8 12 12 C 1.53004 * 109.46798 * 179.97438 * 11 10 9 13 13 S 1.81010 * 109.46816 * 179.97438 * 12 11 10 14 14 C 1.76200 * 99.99770 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00022 * 359.97438 * 14 13 12 16 16 C 1.38794 * 120.00089 * 180.02562 * 14 13 12 17 17 N 1.31634 * 119.99801 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00211 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47526 * 119.99426 * 18 16 14 21 21 H 1.48507 * 109.46890 * 239.99640 * 18 16 14 22 22 C 1.46847 * 111.19629 * 298.26128 * 9 8 7 23 23 H 1.08996 * 109.46076 * 301.71986 * 22 9 8 24 24 C 1.50701 * 109.45899 * 181.75168 * 22 9 8 25 25 O 1.20827 * 120.00382 * 331.15315 * 24 22 9 26 26 O 1.34228 * 119.99805 * 151.14428 * 24 22 9 27 27 C 1.45197 * 117.00195 * 180.02562 * 26 24 22 28 28 C 1.53040 * 109.52506 * 61.73998 * 22 9 8 29 29 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47088 * 299.99901 * 1 2 3 31 31 H 1.08996 * 109.46792 * 60.00157 * 1 2 3 32 32 H 1.08998 * 109.50189 * 302.37406 * 7 5 3 33 33 H 1.09005 * 109.53509 * 182.27528 * 7 5 3 34 34 H 1.09004 * 109.46551 * 299.16606 * 8 7 5 35 35 H 1.09002 * 109.45386 * 179.19114 * 8 7 5 36 36 H 1.09006 * 109.47151 * 305.37698 * 10 9 8 37 37 H 1.09005 * 109.47057 * 185.37912 * 10 9 8 38 38 H 1.08992 * 109.47279 * 60.00042 * 11 10 9 39 39 H 1.09001 * 109.47248 * 299.99401 * 11 10 9 40 40 H 1.09000 * 109.46821 * 60.00152 * 12 11 10 41 41 H 1.08996 * 109.47162 * 299.99475 * 12 11 10 42 42 H 0.97000 * 119.99798 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.47407 * 180.02562 * 27 26 24 44 44 H 1.09003 * 109.47188 * 299.99927 * 27 26 24 45 45 H 1.08999 * 109.47441 * 59.99590 * 27 26 24 46 46 H 1.08998 * 109.49902 * 180.87735 * 28 22 9 47 47 H 1.08997 * 109.53560 * 60.77992 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9572 0.7826 0.8901 7 6 4.1147 0.5811 -1.2507 8 6 3.6115 1.3135 -2.4966 9 7 4.0560 2.7125 -2.4565 10 6 3.7097 3.4108 -3.7017 11 6 2.1878 3.5009 -3.8296 12 6 1.8272 4.2287 -5.1262 13 16 0.0266 4.3347 -5.2779 14 6 -0.1013 5.1915 -6.8122 15 1 0.7923 5.4791 -7.3462 16 6 -1.3504 5.4978 -7.3340 17 7 -2.4395 5.1478 -6.6828 18 14 -1.4860 6.4056 -8.9609 19 1 -0.1256 6.6827 -9.4881 20 1 -2.2333 5.5689 -9.9340 21 1 -2.2068 7.6874 -8.7540 22 6 3.5032 3.4120 -1.2897 23 1 2.4146 3.3678 -1.3218 24 6 3.9480 4.8518 -1.3103 25 8 4.9977 5.1525 -1.8276 26 8 3.1778 5.8001 -0.7541 27 6 3.6687 7.1654 -0.8114 28 6 4.0032 2.7423 -0.0077 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.7714 -0.4532 -1.2731 33 1 5.2043 0.6026 -1.2311 34 1 2.5223 1.2791 -2.5231 35 1 4.0119 0.8306 -3.3880 36 1 4.1139 2.8604 -4.5514 37 1 4.1331 4.4151 -3.6849 38 1 1.7838 4.0512 -2.9800 39 1 1.7645 2.4966 -3.8465 40 1 2.2313 3.6787 -5.9761 41 1 2.2504 5.2330 -5.1089 42 1 -3.3125 5.3622 -7.0473 43 1 2.9530 7.8295 -0.3267 44 1 4.6279 7.2285 -0.2975 45 1 3.7940 7.4631 -1.8524 46 1 3.5803 3.2521 0.8579 47 1 5.0910 2.7983 0.0325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356460607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:33 Heat of formation + Delta-G solvation = -171.590663 kcal Electronic energy + Delta-G solvation = -29737.780443 eV Core-core repulsion = 25626.122518 eV Total energy + Delta-G solvation = -4111.657925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48828 -40.39486 -38.72224 -36.72080 -36.25846 -35.03230 -32.43005 -31.88493 -31.57348 -28.21819 -27.91361 -26.51162 -25.56701 -24.36076 -23.83268 -22.61459 -21.53074 -20.54710 -19.48697 -17.79309 -17.55417 -17.39437 -16.99207 -16.65331 -16.37318 -16.20294 -15.53540 -15.28375 -14.79742 -14.71775 -14.39333 -14.16488 -13.97333 -13.74440 -13.53355 -13.12849 -13.03321 -12.96860 -12.61858 -12.44452 -12.24126 -12.12745 -11.84291 -11.78825 -11.63486 -11.51558 -11.29426 -11.06860 -10.93784 -10.88604 -10.77014 -10.70641 -10.67470 -10.48148 -10.22604 -10.12266 -9.66908 -9.05728 -8.38640 -8.17521 -6.51878 -6.21903 -3.92023 2.00212 2.19507 2.49356 2.60958 3.21333 3.23046 3.30505 3.57978 3.79116 4.21614 4.23118 4.33905 4.45050 4.74970 4.79279 4.95348 4.98347 5.08201 5.09373 5.09909 5.13905 5.16378 5.19316 5.26273 5.26835 5.37253 5.41975 5.45834 5.48744 5.53275 5.59055 5.65532 5.69722 5.75672 5.85693 5.89563 6.10127 6.25179 6.32749 6.40135 6.47891 6.70370 6.83292 6.91879 7.55735 7.61917 7.82332 8.38083 9.24533 10.86379 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.003305 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.848107 B = 8470.265761 C = 9715.594597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.457 3.543 4 O -0.493 6.493 5 C -0.079 4.079 6 H 0.118 0.882 7 C -0.110 4.110 8 C 0.048 3.952 9 N -0.516 5.516 10 C 0.047 3.953 11 C -0.137 4.137 12 C -0.107 4.107 13 S -0.134 6.134 14 C -0.515 4.515 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.078 3.922 23 H 0.105 0.895 24 C 0.470 3.530 25 O -0.491 6.491 26 O -0.354 6.354 27 C 0.036 3.964 28 C -0.091 4.091 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.266 0.734 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.243 -9.497 17.270 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.300 3.700 4 O -0.380 6.380 5 C -0.098 4.098 6 H 0.136 0.864 7 C -0.148 4.148 8 C -0.080 4.080 9 N -0.241 5.241 10 C -0.082 4.082 11 C -0.177 4.177 12 C -0.256 4.256 13 S 0.094 5.906 14 C -0.663 4.663 15 H 0.091 0.909 16 C -0.138 4.138 17 N -0.506 5.506 18 Si 0.744 3.256 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.031 4.031 23 H 0.122 0.878 24 C 0.311 3.689 25 O -0.377 6.377 26 O -0.270 6.270 27 C -0.058 4.058 28 C -0.129 4.129 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.825 -9.435 17.859 23.926 hybrid contribution -0.309 1.350 -2.014 2.444 sum 12.517 -8.085 15.845 21.751 Atomic orbital electron populations 1.23322 0.75899 1.03773 1.03053 1.86467 1.23725 1.33281 1.84008 1.23796 0.92029 0.81641 0.72562 1.90706 1.67039 1.35987 1.44219 1.21149 0.87537 0.98521 1.02560 0.86405 1.21685 1.02528 0.99126 0.91443 1.22226 0.98627 0.88008 0.99118 1.62098 1.58743 1.01736 1.01493 1.22493 0.94371 1.00408 0.90941 1.21971 0.96182 1.01229 0.98326 1.23150 1.02797 1.01403 0.98291 1.84650 0.98232 1.76363 1.31352 1.22735 0.95181 1.42141 1.06245 0.90927 1.25011 0.94829 0.95741 0.98190 1.70041 0.97704 1.44613 1.38215 0.86121 0.78335 0.79158 0.81958 1.19587 1.20558 1.20564 1.21473 1.01671 0.86902 0.93046 0.87769 1.23405 0.82226 0.88459 0.74765 1.90641 1.23416 1.82895 1.40762 1.86555 1.49963 1.18135 1.72329 1.23277 1.00500 0.78950 1.03084 1.21462 1.02539 0.92742 0.96171 0.88066 0.91846 0.91324 0.89554 0.88973 0.94081 0.89023 0.89860 0.89735 0.91637 0.91498 0.92015 0.92248 0.92401 0.88010 0.92090 0.91684 0.89562 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.65 10.43 -39.24 -0.41 -4.06 16 3 C 0.46 5.11 5.86 36.01 0.21 5.32 16 4 O -0.49 -7.13 13.57 -18.75 -0.25 -7.39 16 5 C -0.08 -0.66 3.13 -91.65 -0.29 -0.94 16 6 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 7 C -0.11 -0.86 5.55 -26.66 -0.15 -1.01 16 8 C 0.05 0.52 4.83 -3.84 -0.02 0.50 16 9 N -0.52 -6.75 4.46 -228.07 -1.02 -7.76 16 10 C 0.05 0.70 4.86 -3.83 -0.02 0.69 16 11 C -0.14 -2.43 4.52 -26.73 -0.12 -2.55 16 12 C -0.11 -2.29 5.67 37.16 0.21 -2.07 16 13 S -0.13 -3.63 21.44 -107.50 -2.30 -5.93 16 14 C -0.51 -15.12 9.50 30.94 0.29 -14.83 16 15 H 0.07 2.08 7.80 -52.48 -0.41 1.67 16 16 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 17 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 18 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.08 1.05 1.48 -68.87 -0.10 0.95 16 23 H 0.10 1.64 4.21 -51.93 -0.22 1.42 16 24 C 0.47 7.08 6.02 36.01 0.22 7.30 16 25 O -0.49 -8.18 14.90 -18.75 -0.28 -8.46 16 26 O -0.35 -5.20 10.56 -39.25 -0.41 -5.61 16 27 C 0.04 0.41 10.56 101.05 1.07 1.47 16 28 C -0.09 -0.92 4.50 -26.65 -0.12 -1.04 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.09 0.56 8.07 -51.93 -0.42 0.15 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.52 5.90 -51.93 -0.31 0.21 16 35 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 37 H 0.08 1.41 6.01 -51.93 -0.31 1.10 16 38 H 0.06 1.25 6.45 -51.93 -0.34 0.92 16 39 H 0.07 1.18 6.66 -51.93 -0.35 0.83 16 40 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 45 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 46 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -35.62 389.12 -8.34 -43.95 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.39 Total: 1.07 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 2.16 Total: -2.89 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: -0.28 Total: -33.43 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -1.36 Total: -25.51 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.30 Total: -5.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.62 -8.34 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356460607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.638 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds