Wall clock time and date at job start Wed Apr 1 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00183 * 2 1 4 4 O 1.20823 * 120.00035 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99914 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.52019 * 299.86791 * 5 3 2 7 7 C 1.53114 * 109.52562 * 59.99748 * 5 3 2 8 8 C 1.53030 * 109.28052 * 62.31272 * 7 5 3 9 9 N 1.46850 * 109.52505 * 59.17894 * 8 7 5 10 10 C 1.46900 * 111.00261 * 174.15969 * 9 8 7 11 11 C 1.52995 * 109.46852 * 65.37851 * 10 9 8 12 12 C 1.53004 * 109.46798 * 179.97438 * 11 10 9 13 13 S 1.81010 * 109.46816 * 179.97438 * 12 11 10 14 14 C 1.76200 * 99.99770 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00022 * 359.97438 * 14 13 12 16 16 C 1.38794 * 120.00089 * 180.02562 * 14 13 12 17 17 N 1.31634 * 119.99801 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00211 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47526 * 119.99426 * 18 16 14 21 21 H 1.48507 * 109.46890 * 239.99640 * 18 16 14 22 22 C 1.46847 * 111.19629 * 298.26128 * 9 8 7 23 23 H 1.08996 * 109.46076 * 301.71986 * 22 9 8 24 24 C 1.50701 * 109.45899 * 181.75168 * 22 9 8 25 25 O 1.20827 * 120.00382 * 331.15315 * 24 22 9 26 26 O 1.34228 * 119.99805 * 151.14428 * 24 22 9 27 27 C 1.45197 * 117.00195 * 180.02562 * 26 24 22 28 28 C 1.53040 * 109.52506 * 61.73998 * 22 9 8 29 29 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47088 * 299.99901 * 1 2 3 31 31 H 1.08996 * 109.46792 * 60.00157 * 1 2 3 32 32 H 1.08998 * 109.50189 * 302.37406 * 7 5 3 33 33 H 1.09005 * 109.53509 * 182.27528 * 7 5 3 34 34 H 1.09004 * 109.46551 * 299.16606 * 8 7 5 35 35 H 1.09002 * 109.45386 * 179.19114 * 8 7 5 36 36 H 1.09006 * 109.47151 * 305.37698 * 10 9 8 37 37 H 1.09005 * 109.47057 * 185.37912 * 10 9 8 38 38 H 1.08992 * 109.47279 * 60.00042 * 11 10 9 39 39 H 1.09001 * 109.47248 * 299.99401 * 11 10 9 40 40 H 1.09000 * 109.46821 * 60.00152 * 12 11 10 41 41 H 1.08996 * 109.47162 * 299.99475 * 12 11 10 42 42 H 0.97000 * 119.99798 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.47407 * 180.02562 * 27 26 24 44 44 H 1.09003 * 109.47188 * 299.99927 * 27 26 24 45 45 H 1.08999 * 109.47441 * 59.99590 * 27 26 24 46 46 H 1.08998 * 109.49902 * 180.87735 * 28 22 9 47 47 H 1.08997 * 109.53560 * 60.77992 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9572 0.7826 0.8901 7 6 4.1147 0.5811 -1.2507 8 6 3.6115 1.3135 -2.4966 9 7 4.0560 2.7125 -2.4565 10 6 3.7097 3.4108 -3.7017 11 6 2.1878 3.5009 -3.8296 12 6 1.8272 4.2287 -5.1262 13 16 0.0266 4.3347 -5.2779 14 6 -0.1013 5.1915 -6.8122 15 1 0.7923 5.4791 -7.3462 16 6 -1.3504 5.4978 -7.3340 17 7 -2.4395 5.1478 -6.6828 18 14 -1.4860 6.4056 -8.9609 19 1 -0.1256 6.6827 -9.4881 20 1 -2.2333 5.5689 -9.9340 21 1 -2.2068 7.6874 -8.7540 22 6 3.5032 3.4120 -1.2897 23 1 2.4146 3.3678 -1.3218 24 6 3.9480 4.8518 -1.3103 25 8 4.9977 5.1525 -1.8276 26 8 3.1778 5.8001 -0.7541 27 6 3.6687 7.1654 -0.8114 28 6 4.0032 2.7423 -0.0077 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.7714 -0.4532 -1.2731 33 1 5.2043 0.6026 -1.2311 34 1 2.5223 1.2791 -2.5231 35 1 4.0119 0.8306 -3.3880 36 1 4.1139 2.8604 -4.5514 37 1 4.1331 4.4151 -3.6849 38 1 1.7838 4.0512 -2.9800 39 1 1.7645 2.4966 -3.8465 40 1 2.2313 3.6787 -5.9761 41 1 2.2504 5.2330 -5.1089 42 1 -3.3125 5.3622 -7.0473 43 1 2.9530 7.8295 -0.3267 44 1 4.6279 7.2285 -0.2975 45 1 3.7940 7.4631 -1.8524 46 1 3.5803 3.2521 0.8579 47 1 5.0910 2.7983 0.0325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356460607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:33 Heat of formation + Delta-G solvation = -194.661050 kcal Electronic energy + Delta-G solvation = -29738.780851 eV Core-core repulsion = 25626.122518 eV Total energy + Delta-G solvation = -4112.658332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.44591 -41.41894 -39.72278 -37.66005 -37.37662 -36.12586 -34.65453 -33.10043 -32.55138 -29.09577 -28.82356 -27.97774 -27.40935 -25.40229 -24.86665 -23.64553 -22.77798 -21.54433 -20.46850 -19.61917 -18.83867 -18.40525 -17.97675 -17.71319 -17.28559 -17.17085 -16.94467 -16.64048 -16.46486 -15.99452 -15.89271 -15.23503 -15.05595 -14.81486 -14.70369 -14.37214 -14.09983 -13.98600 -13.76686 -13.60322 -13.36825 -13.23496 -13.10042 -13.03067 -12.93524 -12.87862 -12.68556 -12.52695 -12.48140 -12.20715 -11.86493 -11.79663 -11.68355 -11.58986 -11.53439 -11.30548 -11.19823 -11.17674 -10.43165 -9.40286 -8.74221 -8.41837 -6.19753 1.03046 1.17425 1.27633 1.35226 1.45892 1.59162 1.67244 1.75405 2.22937 2.73454 2.92381 3.24927 3.42798 3.56527 3.68237 3.75698 3.85817 3.94872 4.00357 4.12019 4.15887 4.22162 4.24112 4.27225 4.31749 4.32172 4.35072 4.40861 4.55414 4.63262 4.66644 4.68629 4.73095 4.76835 4.78783 4.91336 4.96114 5.02945 5.10819 5.21871 5.29823 5.34994 5.46617 5.71343 5.89018 6.13746 6.67547 6.73013 7.00027 8.68063 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.003305 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.848107 B = 8470.265761 C = 9715.594597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.454 3.546 4 O -0.535 6.535 5 C -0.073 4.073 6 H 0.160 0.840 7 C -0.101 4.101 8 C 0.041 3.959 9 N -0.508 5.508 10 C 0.057 3.943 11 C -0.119 4.119 12 C -0.083 4.083 13 S -0.198 6.198 14 C -0.539 4.539 15 H 0.072 0.928 16 C 0.017 3.983 17 N -0.907 5.907 18 Si 0.996 3.004 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.271 1.271 22 C 0.076 3.924 23 H 0.079 0.921 24 C 0.467 3.533 25 O -0.511 6.511 26 O -0.370 6.370 27 C 0.028 3.972 28 C -0.088 4.088 29 H 0.133 0.867 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.018 0.982 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.272 0.728 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.076 -10.693 17.410 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.298 3.702 4 O -0.424 6.424 5 C -0.091 4.091 6 H 0.178 0.822 7 C -0.139 4.139 8 C -0.086 4.086 9 N -0.232 5.232 10 C -0.073 4.073 11 C -0.159 4.159 12 C -0.232 4.232 13 S 0.030 5.970 14 C -0.686 4.686 15 H 0.090 0.910 16 C -0.188 4.188 17 N -0.544 5.544 18 Si 0.818 3.182 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.196 1.196 22 C -0.033 4.033 23 H 0.097 0.903 24 C 0.310 3.690 25 O -0.399 6.399 26 O -0.286 6.286 27 C -0.065 4.065 28 C -0.126 4.126 29 H 0.151 0.849 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.036 0.964 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.144 0.856 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.662 -10.658 18.021 25.560 hybrid contribution -0.894 1.719 -1.991 2.778 sum 13.768 -8.938 16.030 22.944 Atomic orbital electron populations 1.23466 0.75494 1.05519 1.01957 1.86470 1.24186 1.32802 1.83616 1.24486 0.93244 0.81207 0.71220 1.90704 1.68167 1.37331 1.46212 1.21304 0.85344 0.97708 1.04773 0.82242 1.21719 1.03706 0.99387 0.89064 1.22434 0.97468 0.86934 1.01796 1.62201 1.58164 1.02605 1.00272 1.22337 0.91635 1.00336 0.92946 1.21831 0.98442 1.00201 0.95461 1.23071 0.97864 1.01786 1.00503 1.84693 1.04230 1.76528 1.31528 1.23053 0.95732 1.42959 1.06903 0.91003 1.26087 0.94139 0.96293 1.02314 1.70168 0.98436 1.45551 1.40228 0.84947 0.78760 0.77862 0.76669 1.18697 1.19345 1.19583 1.21570 1.00269 0.86558 0.94901 0.90328 1.23785 0.81912 0.89148 0.74165 1.90617 1.24259 1.83305 1.41727 1.86551 1.50433 1.19446 1.72201 1.23541 1.02133 0.77833 1.02966 1.21517 1.03414 0.93617 0.94023 0.84894 0.91856 0.93569 0.87535 0.86732 0.96365 0.87638 0.88209 0.91355 0.93561 0.91467 0.91144 0.92749 0.91884 0.85555 0.90613 0.92766 0.89585 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.35 -6.77 10.43 -51.34 -0.54 -7.30 16 3 C 0.45 9.76 5.86 71.24 0.42 10.17 16 4 O -0.53 -15.95 13.57 21.97 0.30 -15.65 16 5 C -0.07 -1.02 3.13 -11.46 -0.04 -1.05 16 6 H 0.16 1.00 8.14 -2.39 -0.02 0.98 16 7 C -0.10 -1.24 5.55 30.64 0.17 -1.07 16 8 C 0.04 0.81 4.83 86.32 0.42 1.23 16 9 N -0.51 -12.78 4.46 -875.49 -3.90 -16.69 16 10 C 0.06 1.71 4.86 86.30 0.42 2.13 16 11 C -0.12 -4.34 4.52 30.59 0.14 -4.21 16 12 C -0.08 -3.62 5.67 71.98 0.41 -3.21 16 13 S -0.20 -11.13 21.44 -56.49 -1.21 -12.34 16 14 C -0.54 -32.25 9.50 67.95 0.65 -31.61 16 15 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 16 C 0.02 0.97 5.49 84.86 0.47 1.43 16 17 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 18 Si 1.00 44.93 29.55 68.60 2.03 46.95 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.08 2.05 1.48 44.19 0.07 2.11 16 23 H 0.08 2.58 4.21 -2.39 -0.01 2.57 16 24 C 0.47 14.26 6.02 71.24 0.43 14.68 16 25 O -0.51 -17.04 14.90 21.96 0.33 -16.72 16 26 O -0.37 -11.17 10.56 -51.40 -0.54 -11.71 16 27 C 0.03 0.65 10.56 113.37 1.20 1.84 16 28 C -0.09 -1.62 4.50 30.65 0.14 -1.48 16 29 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.11 0.95 8.07 -2.39 -0.02 0.94 16 33 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.02 0.45 5.90 -2.38 -0.01 0.44 16 35 H 0.11 1.82 8.07 -2.39 -0.02 1.80 16 36 H 0.10 2.65 8.07 -2.38 -0.02 2.64 16 37 H 0.07 2.30 6.01 -2.38 -0.01 2.29 16 38 H 0.05 1.86 6.45 -2.39 -0.02 1.85 16 39 H 0.07 2.44 6.66 -2.39 -0.02 2.42 16 40 H 0.07 2.94 8.14 -2.40 -0.02 2.92 16 41 H 0.05 2.41 8.14 -2.40 -0.02 2.39 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.13 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 45 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 46 H 0.09 1.59 8.04 -2.39 -0.02 1.57 16 47 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -80.14 389.12 3.79 -76.35 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.97 Total: 20.14 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 6.07 Total: -7.31 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -3.61 Total: -72.41 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.45 Total: -51.38 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: -11.13 SS G_CDS: -1.21 Total: -12.34 kcal Total: -80.14 3.79 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356460607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.310 kcal (2) G-P(sol) polarization free energy of solvation -80.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds