Wall clock time and date at job start Wed Apr 1 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00088 * 2 1 4 4 N 1.46507 * 109.46842 * 125.00077 * 3 2 1 5 5 C 1.46500 * 119.99837 * 90.00427 * 4 3 2 6 6 C 1.50695 * 109.47543 * 89.99816 * 5 4 3 7 7 H 1.08009 * 119.99944 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00140 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99997 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99901 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47202 * 89.99715 * 10 8 6 12 12 H 1.48497 * 109.47130 * 209.99907 * 10 8 6 13 13 H 1.48497 * 109.47289 * 329.99876 * 10 8 6 14 14 C 1.34777 * 119.99707 * 269.99874 * 4 3 2 15 15 O 1.21283 * 119.99426 * 180.02562 * 14 4 3 16 16 C 1.50698 * 120.00251 * 0.02562 * 14 4 3 17 17 H 1.08995 * 109.47207 * 39.99988 * 16 14 4 18 18 C 1.53002 * 109.46804 * 279.99848 * 16 14 4 19 19 S 1.81395 * 109.47000 * 160.00124 * 16 14 4 20 20 O 1.42100 * 108.58082 * 297.43025 * 19 16 14 21 21 O 1.42104 * 108.58280 * 68.45608 * 19 16 14 22 22 C 1.81407 * 101.92037 * 182.94393 * 19 16 14 23 23 C 1.53176 * 109.54301 * 178.27388 * 22 19 16 24 24 C 1.53106 * 109.15688 * 183.24287 * 23 22 19 25 25 O 1.42901 * 109.48621 * 57.47348 * 24 23 22 26 26 C 1.42896 * 114.09770 * 298.88963 * 25 24 23 27 27 C 1.53094 * 109.41693 * 61.15945 * 26 25 24 28 28 H 1.08004 * 119.99620 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00540 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00448 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47154 * 5.00136 * 3 2 1 32 32 H 1.09000 * 109.47301 * 245.00197 * 3 2 1 33 33 H 1.09001 * 109.46616 * 209.99750 * 5 4 3 34 34 H 1.08997 * 109.46837 * 329.99564 * 5 4 3 35 35 H 0.97002 * 119.99880 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46748 * 180.90067 * 18 16 14 37 37 H 1.08998 * 109.47410 * 300.89879 * 18 16 14 38 38 H 1.09001 * 109.47353 * 60.90318 * 18 16 14 39 39 H 1.08993 * 109.54425 * 298.44984 * 22 19 16 40 40 H 1.09006 * 109.52719 * 303.05894 * 23 22 19 41 41 H 1.09002 * 109.52471 * 63.24829 * 23 22 19 42 42 H 1.08997 * 109.40173 * 297.49363 * 24 23 22 43 43 H 1.09003 * 109.49138 * 177.50891 * 24 23 22 44 44 H 1.09000 * 109.48462 * 301.17422 * 26 25 24 45 45 H 1.09007 * 109.49067 * 181.14536 * 26 25 24 46 46 H 1.08998 * 109.52109 * 182.47840 * 27 26 25 47 47 H 1.09004 * 109.57438 * 62.32909 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3590 0.8256 0.9694 6 6 5.2616 1.9479 0.5260 7 1 4.8586 2.9391 0.3791 8 6 6.6017 1.7091 0.3067 9 7 7.0923 0.5021 0.4851 10 14 7.7205 3.1002 -0.2436 11 1 8.2908 3.7779 0.9483 12 1 8.8215 2.5506 -1.0747 13 1 6.9384 4.0780 -1.0420 14 6 2.5936 1.8222 2.3214 15 8 3.3639 1.8447 3.2579 16 6 1.1892 2.3425 2.4882 17 1 0.4951 1.6916 1.9566 18 6 1.0990 3.7591 1.9172 19 16 0.7609 2.3726 4.2506 20 8 0.7925 1.0415 4.7470 21 8 1.5449 3.3704 4.8902 22 6 -0.9641 2.9325 4.2075 23 6 -1.5232 2.9798 5.6328 24 6 -3.0015 3.3749 5.5797 25 8 -3.7148 2.4436 4.7635 26 6 -3.2659 2.3928 3.4078 27 6 -1.7990 1.9561 3.3734 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 4.7141 0.4277 1.9200 34 1 4.3666 0.0351 0.2190 35 1 8.0352 0.3342 0.3312 36 1 0.0872 4.1415 2.0523 37 1 1.8046 4.4064 2.4380 38 1 1.3409 3.7387 0.8545 39 1 -1.0138 3.9266 3.7632 40 1 -1.4264 1.9973 6.0949 41 1 -0.9692 3.7144 6.2173 42 1 -3.0940 4.3749 5.1561 43 1 -3.4164 3.3671 6.5876 44 1 -3.3620 3.3799 2.9558 45 1 -3.8713 1.6775 2.8509 46 1 -1.4422 1.9591 2.3435 47 1 -1.7070 0.9520 3.7877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359409266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:24 Heat of formation + Delta-G solvation = -128.455554 kcal Electronic energy + Delta-G solvation = -30245.944390 eV Core-core repulsion = 26136.156943 eV Total energy + Delta-G solvation = -4109.787447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.65758 -39.55876 -36.94529 -36.07769 -35.82466 -34.54830 -33.63909 -32.97108 -32.13420 -31.53631 -27.66309 -26.08892 -25.86548 -24.75734 -24.09999 -22.76577 -21.11450 -20.11634 -19.21216 -18.47508 -17.73694 -16.79063 -16.71011 -16.51184 -16.39036 -16.02173 -15.64651 -15.26171 -15.02037 -14.79360 -14.67147 -14.31262 -14.18808 -14.11207 -13.66331 -13.21436 -12.97364 -12.83819 -12.65352 -12.36969 -12.16598 -12.01547 -11.97303 -11.87486 -11.80310 -11.75485 -11.45746 -11.34252 -11.24834 -11.20888 -10.93338 -10.72935 -10.63764 -10.48857 -10.24217 -9.78453 -9.75943 -9.51394 -9.24256 -8.48570 -7.90237 -6.09973 -4.15447 -0.14264 2.21509 2.67690 3.00502 3.28638 3.35312 3.35359 3.40134 3.46036 3.73780 3.83309 4.08747 4.22670 4.38616 4.46456 4.51259 4.55377 4.74101 4.77049 4.82977 4.94740 4.99286 5.00942 5.06337 5.13027 5.16871 5.23548 5.24222 5.27739 5.40556 5.46818 5.50601 5.51426 5.64860 5.85410 5.92711 6.02503 6.59734 6.66253 6.75030 6.87102 7.31526 7.36275 7.84334 8.11921 8.14812 8.64670 8.89350 9.49690 10.98368 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.003373 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.150831 B = 8298.255845 C = 9034.188969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.125 3.875 4 N -0.577 5.577 5 C 0.243 3.757 6 C -0.531 4.531 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.538 3.462 15 O -0.525 6.525 16 C -0.616 4.616 17 H 0.149 0.851 18 C -0.138 4.138 19 S 2.448 3.552 20 O -0.922 6.922 21 O -0.912 6.912 22 C -0.586 4.586 23 C -0.144 4.144 24 C 0.071 3.929 25 O -0.379 6.379 26 C 0.070 3.930 27 C -0.149 4.149 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.827 5.090 1.523 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.175 4.175 3 C 0.001 3.999 4 N -0.307 5.307 5 C 0.124 3.876 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.321 3.679 15 O -0.403 6.403 16 C -0.726 4.726 17 H 0.167 0.833 18 C -0.195 4.195 19 S 2.626 3.374 20 O -0.919 6.919 21 O -0.909 6.909 22 C -0.694 4.694 23 C -0.183 4.183 24 C -0.007 4.007 25 O -0.297 6.297 26 C -0.008 4.008 27 C -0.187 4.187 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.158 0.842 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.793 4.655 2.762 23.427 hybrid contribution 0.489 0.993 -1.394 1.780 sum -22.304 5.648 1.368 23.049 Atomic orbital electron populations 1.23801 0.95693 1.01717 1.03020 1.23614 0.96212 1.00075 0.97561 1.20813 0.92656 0.94443 0.91947 1.48074 1.14735 1.59563 1.08295 1.19451 0.74536 0.94810 0.98754 1.21383 0.93477 0.95850 1.46262 0.92279 1.24932 0.97878 0.95856 0.95328 1.69927 1.14226 1.20195 1.48727 0.86476 0.80203 0.81955 0.78650 1.20421 1.21110 1.19919 1.18840 0.85571 0.79010 0.84450 1.90835 1.54269 1.55905 1.39243 1.30712 1.06666 1.07182 1.28024 0.83329 1.21647 1.03332 0.90308 1.04252 1.07773 0.76542 0.76060 0.76996 1.93559 1.85640 1.36389 1.76272 1.93566 1.65477 1.60919 1.70969 1.30430 1.23542 1.10637 1.04790 1.22046 0.98780 1.05030 0.92423 1.22499 0.89908 0.92190 0.96114 1.87956 1.58421 1.62291 1.21076 1.22499 0.93181 1.01379 0.83757 1.22159 0.97116 0.99350 1.00068 0.88765 0.88216 0.86644 0.90505 0.88397 0.93404 0.94428 0.92581 0.90829 0.89453 0.89370 0.84212 0.89085 0.88853 0.92590 0.87967 0.92648 0.88011 0.89273 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 13.37 29.02 0.39 -1.63 16 2 C -0.16 -2.03 9.56 -36.02 -0.34 -2.37 16 3 C 0.12 1.88 5.46 -5.19 -0.03 1.85 16 4 N -0.58 -11.88 2.44 -176.43 -0.43 -12.31 16 5 C 0.24 6.25 5.16 -5.20 -0.03 6.22 16 6 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 14 C 0.54 11.29 6.85 -10.99 -0.08 11.21 16 15 O -0.53 -13.74 15.35 1.44 0.02 -13.72 16 16 C -0.62 -8.81 1.83 -27.88 -0.05 -8.86 16 17 H 0.15 1.60 4.53 -51.93 -0.24 1.37 16 18 C -0.14 -1.52 8.69 37.16 0.32 -1.20 16 19 S 2.45 37.21 3.14 -107.50 -0.34 36.87 16 20 O -0.92 -17.13 17.90 -57.83 -1.03 -18.16 16 21 O -0.91 -17.10 17.48 -61.33 -1.07 -18.17 16 22 C -0.59 -5.35 2.27 -26.55 -0.06 -5.41 16 23 C -0.14 -1.28 5.44 -26.59 -0.14 -1.43 16 24 C 0.07 0.51 6.84 37.21 0.25 0.77 16 25 O -0.38 -3.39 10.77 -35.23 -0.38 -3.77 16 26 C 0.07 0.46 6.84 37.21 0.25 0.72 16 27 C -0.15 -1.13 5.09 -26.59 -0.14 -1.27 16 28 H 0.09 0.71 7.76 -52.48 -0.41 0.30 16 29 H 0.10 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.08 0.90 4.40 -51.93 -0.23 0.67 16 32 H 0.10 1.51 8.07 -51.93 -0.42 1.09 16 33 H 0.05 1.40 7.42 -51.93 -0.39 1.02 16 34 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.46 6.69 -51.93 -0.35 0.11 16 37 H 0.09 1.13 8.02 -51.93 -0.42 0.71 16 38 H 0.09 0.91 6.32 -51.93 -0.33 0.58 16 39 H 0.14 0.86 7.01 -51.93 -0.36 0.49 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.46 6.62 -51.93 -0.34 0.12 16 47 H 0.10 0.84 8.01 -51.93 -0.42 0.42 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -38.76 387.49 -8.98 -47.74 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.24 Total: -0.60 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.07 Total: -14.82 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.31 Total: -37.85 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -2.46 Total: -53.81 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 37.21 SS G_CDS: -0.34 Total: 36.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.76 -8.98 -47.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359409266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.712 kcal (2) G-P(sol) polarization free energy of solvation -38.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds