Wall clock time and date at job start Wed Apr 1 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00088 * 2 1 4 4 N 1.46507 * 109.46842 * 125.00077 * 3 2 1 5 5 C 1.46500 * 119.99837 * 90.00427 * 4 3 2 6 6 C 1.50695 * 109.47543 * 89.99816 * 5 4 3 7 7 H 1.08009 * 119.99944 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00140 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99997 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99901 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47202 * 89.99715 * 10 8 6 12 12 H 1.48497 * 109.47130 * 209.99907 * 10 8 6 13 13 H 1.48497 * 109.47289 * 329.99876 * 10 8 6 14 14 C 1.34777 * 119.99707 * 269.99874 * 4 3 2 15 15 O 1.21283 * 119.99426 * 180.02562 * 14 4 3 16 16 C 1.50698 * 120.00251 * 0.02562 * 14 4 3 17 17 H 1.08995 * 109.47207 * 39.99988 * 16 14 4 18 18 C 1.53002 * 109.46804 * 279.99848 * 16 14 4 19 19 S 1.81395 * 109.47000 * 160.00124 * 16 14 4 20 20 O 1.42100 * 108.58082 * 297.43025 * 19 16 14 21 21 O 1.42104 * 108.58280 * 68.45608 * 19 16 14 22 22 C 1.81407 * 101.92037 * 182.94393 * 19 16 14 23 23 C 1.53176 * 109.54301 * 178.27388 * 22 19 16 24 24 C 1.53106 * 109.15688 * 183.24287 * 23 22 19 25 25 O 1.42901 * 109.48621 * 57.47348 * 24 23 22 26 26 C 1.42896 * 114.09770 * 298.88963 * 25 24 23 27 27 C 1.53094 * 109.41693 * 61.15945 * 26 25 24 28 28 H 1.08004 * 119.99620 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00540 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00448 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47154 * 5.00136 * 3 2 1 32 32 H 1.09000 * 109.47301 * 245.00197 * 3 2 1 33 33 H 1.09001 * 109.46616 * 209.99750 * 5 4 3 34 34 H 1.08997 * 109.46837 * 329.99564 * 5 4 3 35 35 H 0.97002 * 119.99880 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46748 * 180.90067 * 18 16 14 37 37 H 1.08998 * 109.47410 * 300.89879 * 18 16 14 38 38 H 1.09001 * 109.47353 * 60.90318 * 18 16 14 39 39 H 1.08993 * 109.54425 * 298.44984 * 22 19 16 40 40 H 1.09006 * 109.52719 * 303.05894 * 23 22 19 41 41 H 1.09002 * 109.52471 * 63.24829 * 23 22 19 42 42 H 1.08997 * 109.40173 * 297.49363 * 24 23 22 43 43 H 1.09003 * 109.49138 * 177.50891 * 24 23 22 44 44 H 1.09000 * 109.48462 * 301.17422 * 26 25 24 45 45 H 1.09007 * 109.49067 * 181.14536 * 26 25 24 46 46 H 1.08998 * 109.52109 * 182.47840 * 27 26 25 47 47 H 1.09004 * 109.57438 * 62.32909 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3590 0.8256 0.9694 6 6 5.2616 1.9479 0.5260 7 1 4.8586 2.9391 0.3791 8 6 6.6017 1.7091 0.3067 9 7 7.0923 0.5021 0.4851 10 14 7.7205 3.1002 -0.2436 11 1 8.2908 3.7779 0.9483 12 1 8.8215 2.5506 -1.0747 13 1 6.9384 4.0780 -1.0420 14 6 2.5936 1.8222 2.3214 15 8 3.3639 1.8447 3.2579 16 6 1.1892 2.3425 2.4882 17 1 0.4951 1.6916 1.9566 18 6 1.0990 3.7591 1.9172 19 16 0.7609 2.3726 4.2506 20 8 0.7925 1.0415 4.7470 21 8 1.5449 3.3704 4.8902 22 6 -0.9641 2.9325 4.2075 23 6 -1.5232 2.9798 5.6328 24 6 -3.0015 3.3749 5.5797 25 8 -3.7148 2.4436 4.7635 26 6 -3.2659 2.3928 3.4078 27 6 -1.7990 1.9561 3.3734 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 4.7141 0.4277 1.9200 34 1 4.3666 0.0351 0.2190 35 1 8.0352 0.3342 0.3312 36 1 0.0872 4.1415 2.0523 37 1 1.8046 4.4064 2.4380 38 1 1.3409 3.7387 0.8545 39 1 -1.0138 3.9266 3.7632 40 1 -1.4264 1.9973 6.0949 41 1 -0.9692 3.7144 6.2173 42 1 -3.0940 4.3749 5.1561 43 1 -3.4164 3.3671 6.5876 44 1 -3.3620 3.3799 2.9558 45 1 -3.8713 1.6775 2.8509 46 1 -1.4422 1.9591 2.3435 47 1 -1.7070 0.9520 3.7877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359409266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:23 Heat of formation + Delta-G solvation = -159.612222 kcal Electronic energy + Delta-G solvation = -30247.295444 eV Core-core repulsion = 26136.156943 eV Total energy + Delta-G solvation = -4111.138501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16112 -40.21431 -38.19589 -37.54075 -37.11285 -35.56525 -35.08109 -34.10984 -33.77242 -32.09336 -29.57708 -27.28058 -26.58151 -26.05419 -24.94592 -24.32079 -21.80299 -21.21533 -20.50481 -19.69223 -18.89684 -18.65204 -18.02106 -17.75057 -17.12196 -16.97920 -16.72789 -16.70193 -16.21717 -15.99861 -15.69395 -15.57889 -15.05701 -14.97838 -14.76632 -14.66230 -14.36209 -13.94496 -13.64702 -13.51004 -13.38297 -13.24957 -13.20454 -13.08326 -13.02827 -12.97896 -12.77028 -12.50370 -12.39737 -12.22025 -12.20381 -12.13520 -11.98984 -11.74171 -11.68494 -11.15335 -11.01614 -10.69878 -10.42042 -10.35153 -9.65122 -8.27460 -6.42676 -1.25110 1.26473 1.33639 1.38062 1.43900 1.48716 1.62722 2.04655 2.35199 2.70761 2.82707 3.02005 3.03117 3.26689 3.29339 3.36717 3.68315 3.75933 3.89870 3.97546 4.00066 4.07624 4.26724 4.36656 4.48009 4.51709 4.52799 4.54052 4.59135 4.63781 4.75386 4.83847 4.86720 4.89837 5.04596 5.06638 5.08959 5.14397 5.17414 5.44420 5.68577 5.71442 5.78709 5.97503 6.29627 6.46615 6.66290 7.06173 7.29095 8.80653 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.003373 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.150831 B = 8298.255845 C = 9034.188969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.202 4.202 3 C 0.121 3.879 4 N -0.581 5.581 5 C 0.257 3.743 6 C -0.545 4.545 7 H 0.060 0.940 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.970 3.030 11 H -0.283 1.283 12 H -0.274 1.274 13 H -0.256 1.256 14 C 0.519 3.481 15 O -0.597 6.597 16 C -0.598 4.598 17 H 0.188 0.812 18 C -0.145 4.145 19 S 2.412 3.588 20 O -0.979 6.979 21 O -0.968 6.968 22 C -0.538 4.538 23 C -0.158 4.158 24 C 0.073 3.927 25 O -0.402 6.402 26 C 0.066 3.934 27 C -0.159 4.159 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.087 0.913 33 H -0.007 1.007 34 H 0.029 0.971 35 H 0.268 0.732 36 H 0.139 0.861 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.188 0.812 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.621 7.953 -0.973 29.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.221 4.221 3 C 0.000 4.000 4 N -0.309 5.309 5 C 0.136 3.864 6 C -0.583 4.583 7 H 0.079 0.921 8 C -0.193 4.193 9 N -0.568 5.568 10 Si 0.794 3.206 11 H -0.209 1.209 12 H -0.199 1.199 13 H -0.179 1.179 14 C 0.306 3.694 15 O -0.479 6.479 16 C -0.708 4.708 17 H 0.206 0.794 18 C -0.203 4.203 19 S 2.599 3.401 20 O -0.976 6.976 21 O -0.965 6.965 22 C -0.652 4.652 23 C -0.197 4.197 24 C -0.004 4.004 25 O -0.321 6.321 26 C -0.011 4.011 27 C -0.198 4.198 28 H 0.154 0.846 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.139 0.861 32 H 0.105 0.895 33 H 0.012 0.988 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.205 0.795 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.130 0.870 44 H 0.103 0.897 45 H 0.137 0.863 46 H 0.144 0.856 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.563 7.490 0.229 28.564 hybrid contribution 1.793 0.033 -0.597 1.890 sum -25.770 7.524 -0.368 26.848 Atomic orbital electron populations 1.24251 0.94137 1.04497 0.96846 1.23313 0.97543 0.98052 1.03207 1.21156 0.92349 0.97321 0.89214 1.48071 1.13738 1.58758 1.10321 1.18864 0.77835 0.94379 0.95340 1.21687 0.94323 0.96188 1.46122 0.92146 1.25920 0.99583 0.98548 0.95289 1.70061 1.14729 1.22411 1.49641 0.85375 0.78234 0.78796 0.78172 1.20945 1.19898 1.17926 1.19975 0.88145 0.77955 0.83292 1.90792 1.57197 1.58460 1.41449 1.30586 1.02091 1.09857 1.28277 0.79446 1.21929 1.06798 0.87310 1.04248 1.08486 0.79658 0.74747 0.77236 1.93483 1.87580 1.38983 1.77554 1.93492 1.69341 1.61273 1.72416 1.30095 1.15696 1.13143 1.06242 1.22261 1.00720 1.04516 0.92224 1.22623 0.87663 0.93046 0.97115 1.87944 1.58762 1.62902 1.22450 1.22768 0.91804 1.03575 0.83002 1.22439 0.97995 0.97921 1.01438 0.84602 0.86572 0.89359 0.86060 0.89522 0.98849 0.95257 0.92339 0.84230 0.92015 0.88045 0.79456 0.90962 0.88349 0.89920 0.86971 0.89670 0.86293 0.85646 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 13.37 67.79 0.91 -1.47 16 2 C -0.20 -5.00 9.56 25.65 0.25 -4.76 16 3 C 0.12 3.49 5.46 85.63 0.47 3.96 16 4 N -0.58 -24.97 2.44 -830.48 -2.03 -27.00 16 5 C 0.26 14.28 5.16 85.63 0.44 14.73 16 6 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 7 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 8 C 0.01 0.33 5.46 84.65 0.46 0.80 16 9 N -0.93 -57.40 13.29 21.44 0.28 -57.12 16 10 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 14 C 0.52 22.81 6.85 87.66 0.60 23.41 16 15 O -0.60 -34.10 15.35 0.90 0.01 -34.08 16 16 C -0.60 -16.10 1.83 29.85 0.05 -16.04 16 17 H 0.19 3.26 4.53 -2.39 -0.01 3.25 16 18 C -0.15 -2.63 8.69 71.98 0.63 -2.00 16 19 S 2.41 73.65 3.14 -56.49 -0.18 73.47 16 20 O -0.98 -38.84 17.90 -127.37 -2.28 -41.12 16 21 O -0.97 -38.22 17.48 -124.02 -2.17 -40.39 16 22 C -0.54 -7.67 2.27 30.71 0.07 -7.60 16 23 C -0.16 -2.44 5.44 30.69 0.17 -2.27 16 24 C 0.07 0.76 6.84 72.02 0.49 1.25 16 25 O -0.40 -5.35 10.77 -148.98 -1.60 -6.95 16 26 C 0.07 0.46 6.84 72.01 0.49 0.95 16 27 C -0.16 -1.57 5.09 30.68 0.16 -1.42 16 28 H 0.14 0.91 7.76 -2.91 -0.02 0.89 16 29 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.09 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.12 2.32 4.40 -2.39 -0.01 2.31 16 32 H 0.09 2.66 8.07 -2.39 -0.02 2.64 16 33 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 34 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.14 0.65 6.69 -2.38 -0.02 0.64 16 37 H 0.06 1.49 8.02 -2.39 -0.02 1.48 16 38 H 0.10 1.59 6.32 -2.39 -0.02 1.58 16 39 H 0.19 0.95 7.01 -2.39 -0.02 0.93 16 40 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.13 0.31 6.62 -2.39 -0.02 0.29 16 47 H 0.08 1.13 8.01 -2.38 -0.02 1.11 16 Total: -1.00 -99.79 387.49 0.46 -99.34 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.96 Total: 8.46 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 5.42 Total: -21.99 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.74 Total: -84.12 kcal Atomic # 8 Polarization: -116.51 SS G_CDS: -6.04 Total: -122.55 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 73.65 SS G_CDS: -0.18 Total: 73.47 kcal Total: -99.79 0.46 -99.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359409266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.273 kcal (2) G-P(sol) polarization free energy of solvation -99.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds