Wall clock time and date at job start Wed Apr 1 2020 03:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00268 * 2 1 4 4 O 1.20820 * 119.99901 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99857 * 180.02562 * 3 2 1 6 6 C 1.52993 * 112.84873 * 294.52902 * 5 3 2 7 7 S 1.81402 * 109.47262 * 292.65549 * 6 5 3 8 8 O 1.42100 * 110.53993 * 63.93895 * 7 6 5 9 9 O 1.42098 * 110.54070 * 287.18940 * 7 6 5 10 10 N 1.65602 * 104.44892 * 175.56344 * 7 6 5 11 11 C 1.46500 * 119.99797 * 270.00179 * 10 7 6 12 12 C 1.50704 * 109.47150 * 265.00118 * 11 10 7 13 13 H 1.08006 * 119.99721 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00207 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99969 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46920 * 60.00358 * 16 14 12 18 18 H 1.48503 * 109.46899 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47524 * 300.00259 * 16 14 12 20 20 C 1.46496 * 120.00171 * 89.99860 * 10 7 6 21 21 C 1.52994 * 109.47406 * 265.00243 * 20 10 7 22 22 C 1.52997 * 117.52342 * 116.28433 * 21 20 10 23 23 C 1.52996 * 60.00229 * 107.47893 * 22 21 20 24 24 C 1.53782 * 113.68984 * 65.80095 * 5 3 2 25 25 C 1.53783 * 87.08261 * 89.12560 * 24 5 3 26 26 C 1.53779 * 113.61223 * 163.33316 * 5 3 2 27 27 H 1.08993 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46437 * 300.00211 * 1 2 3 29 29 H 1.09006 * 109.46671 * 59.99608 * 1 2 3 30 30 H 1.09012 * 109.46938 * 172.65761 * 6 5 3 31 31 H 1.08999 * 109.47730 * 52.65975 * 6 5 3 32 32 H 1.08998 * 109.47203 * 24.99976 * 11 10 7 33 33 H 1.08999 * 109.47031 * 145.00239 * 11 10 7 34 34 H 0.96998 * 120.00148 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.47250 * 144.99615 * 20 10 7 36 36 H 1.09005 * 109.46944 * 25.00196 * 20 10 7 37 37 H 1.08999 * 115.54915 * 330.57879 * 21 20 10 38 38 H 1.08997 * 117.50394 * 214.97607 * 22 21 20 39 39 H 1.09005 * 117.49585 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.50116 * 252.51445 * 23 22 21 41 41 H 1.09000 * 117.49534 * 107.49113 * 23 22 21 42 42 H 1.09004 * 113.61293 * 203.67133 * 24 5 3 43 43 H 1.09002 * 113.61653 * 334.57281 * 24 5 3 44 44 H 1.09000 * 113.61209 * 270.87960 * 25 24 5 45 45 H 1.08996 * 113.61344 * 139.97862 * 25 24 5 46 46 H 1.08997 * 113.61548 * 25.34698 * 26 5 3 47 47 H 1.09000 * 113.61583 * 156.25291 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1908 0.7210 1.2817 7 16 3.7622 1.7980 2.6770 8 8 2.3586 1.7921 2.8986 9 8 4.4877 3.0178 2.6065 10 7 4.3881 1.0266 4.0020 11 6 3.5731 0.0568 4.7378 12 6 2.9041 0.7427 5.9011 13 1 3.0700 1.7956 6.0751 14 6 2.0814 0.0258 6.7438 15 7 1.8807 -1.2566 6.5327 16 14 1.2528 0.8759 8.1861 17 1 0.3849 1.9709 7.6831 18 1 0.4266 -0.1071 8.9319 19 1 2.2878 1.4399 9.0894 20 6 5.7568 1.3139 4.4382 21 6 6.7109 0.2785 3.8395 22 6 7.7757 0.7802 2.8621 23 6 8.1778 0.3373 4.2703 24 6 4.2131 0.7308 -1.2854 25 6 4.0855 2.1524 -1.8578 26 6 4.1108 2.6550 -0.4046 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 5.2747 0.6834 1.1712 31 1 3.8096 -0.2832 1.4673 32 1 2.8136 -0.3571 4.0745 33 1 4.2099 -0.7470 5.1072 34 1 1.3016 -1.7609 7.1253 35 1 5.8083 1.2692 5.5261 36 1 6.0439 2.3101 4.1015 37 1 6.2801 -0.7052 3.6530 38 1 8.0454 0.1267 2.0326 39 1 7.7964 1.8483 2.6451 40 1 8.4632 1.1138 4.9799 41 1 8.7121 -0.6078 4.3671 42 1 5.2447 0.4052 -1.1510 43 1 3.6001 -0.0057 -1.8049 44 1 3.1390 2.3349 -2.3665 45 1 4.9494 2.4665 -2.4435 46 1 3.4152 3.4719 -0.2131 47 1 5.1144 2.8555 -0.0294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360226674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:34 Heat of formation + Delta-G solvation = -103.902272 kcal Electronic energy + Delta-G solvation = -30686.165957 eV Core-core repulsion = 26577.443221 eV Total energy + Delta-G solvation = -4108.722736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10468 -38.53005 -37.71556 -36.48864 -36.24761 -35.31914 -34.80458 -32.35368 -30.79616 -27.86968 -27.82289 -25.95134 -25.48380 -24.48710 -22.54256 -22.19812 -22.10634 -20.31734 -19.40899 -18.29816 -17.34396 -17.11242 -16.80789 -16.45048 -16.39087 -15.72007 -15.56480 -15.12928 -14.88737 -14.62626 -14.38677 -14.16793 -13.73687 -13.39636 -13.10113 -12.96616 -12.62370 -12.51198 -12.33912 -12.31535 -11.94281 -11.86136 -11.51900 -11.47316 -11.41710 -11.25858 -11.21524 -11.06659 -11.01110 -10.76966 -10.70454 -10.68928 -10.55306 -10.33493 -10.31178 -10.07301 -9.99514 -9.72739 -9.61623 -8.42001 -8.07501 -6.04385 -4.07330 0.76394 2.14364 2.61183 3.26677 3.35819 3.38863 3.44998 3.93690 4.01972 4.22510 4.23443 4.45965 4.50771 4.54254 4.67070 4.70320 4.91948 5.06702 5.10345 5.12880 5.19263 5.30369 5.32981 5.35942 5.47265 5.50019 5.59271 5.63022 5.67057 5.70588 5.71762 5.77777 5.81895 5.87877 5.98052 6.07790 6.09184 6.20875 6.42255 6.51091 6.58017 7.18684 7.37057 7.58631 7.73277 7.93270 8.22365 8.94409 9.57305 11.04384 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.005203 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.108370 B = 5380.687466 C = 7286.830241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.349 6.349 3 C 0.478 3.522 4 O -0.485 6.485 5 C -0.073 4.073 6 C -0.631 4.631 7 S 2.599 3.401 8 O -0.929 6.929 9 O -0.966 6.966 10 N -0.979 5.979 11 C 0.255 3.745 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.898 5.898 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.149 3.851 21 C -0.174 4.174 22 C -0.194 4.194 23 C -0.172 4.172 24 C -0.109 4.109 25 C -0.142 4.142 26 C -0.138 4.138 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 0.288 -15.698 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C 0.319 3.681 4 O -0.371 6.371 5 C -0.075 4.075 6 C -0.756 4.756 7 S 2.689 3.311 8 O -0.919 6.919 9 O -0.956 6.956 10 N -0.817 5.817 11 C 0.134 3.866 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.537 5.537 16 Si 0.723 3.277 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.022 3.978 21 C -0.194 4.194 22 C -0.231 4.231 23 C -0.210 4.210 24 C -0.148 4.148 25 C -0.179 4.179 26 C -0.176 4.176 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.743 1.210 -15.613 17.470 hybrid contribution -0.416 -0.476 0.701 0.944 sum 7.327 0.734 -14.913 16.632 Atomic orbital electron populations 1.23372 0.75680 1.03984 1.03001 1.86430 1.23899 1.32505 1.83683 1.22725 0.90407 0.82049 0.72938 1.90677 1.66375 1.36214 1.43821 1.21275 0.88263 1.01277 0.96707 1.30905 1.11088 1.18691 1.14945 1.05388 0.75084 0.75431 0.75183 1.93652 1.29188 1.86135 1.82926 1.93500 1.74423 1.41002 1.86669 1.57457 1.22130 1.60050 1.42057 1.19096 0.89136 0.86862 0.91539 1.21418 1.27852 0.96276 1.10751 0.92173 1.24903 0.96208 0.94838 0.97987 1.69904 1.38169 1.06958 1.38654 0.86598 0.79634 0.79394 0.82102 1.20002 1.21188 1.20148 1.20828 0.79711 0.96044 1.01215 1.23080 0.90874 1.02010 1.03437 1.23150 1.04782 1.01777 0.93397 1.22856 0.97528 1.02961 0.97637 1.22975 1.01707 0.97563 0.92522 1.22896 1.03026 0.95744 0.96255 1.23306 1.03322 0.94325 0.96604 0.87846 0.90793 0.92075 0.83929 0.84042 0.94546 0.94421 0.92692 0.88951 0.89906 0.87119 0.89124 0.88482 0.88647 0.88978 0.88035 0.90089 0.89808 0.90008 0.88868 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.35 -5.51 10.56 -39.25 -0.41 -5.92 16 3 C 0.48 8.10 5.38 36.01 0.19 8.29 16 4 O -0.49 -9.36 15.69 -18.75 -0.29 -9.65 16 5 C -0.07 -1.02 0.89 -154.85 -0.14 -1.16 16 6 C -0.63 -9.17 5.57 37.15 0.21 -8.97 16 7 S 2.60 52.13 4.96 -107.50 -0.53 51.60 16 8 O -0.93 -23.04 15.99 -57.54 -0.92 -23.96 16 9 O -0.97 -19.75 15.88 -57.54 -0.91 -20.66 16 10 N -0.98 -20.05 2.70 -115.66 -0.31 -20.37 16 11 C 0.26 6.31 5.01 -5.19 -0.03 6.28 16 12 C -0.52 -14.74 9.38 -34.44 -0.32 -15.06 16 13 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 16 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.15 2.55 5.94 -4.05 -0.02 2.53 16 21 C -0.17 -2.40 6.01 -90.62 -0.54 -2.94 16 22 C -0.19 -2.16 10.18 -26.73 -0.27 -2.43 16 23 C -0.17 -1.96 10.25 -26.73 -0.27 -2.24 16 24 C -0.11 -1.09 7.22 -25.92 -0.19 -1.28 16 25 C -0.14 -1.39 7.81 -25.92 -0.20 -1.59 16 26 C -0.14 -1.78 6.10 -25.92 -0.16 -1.94 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.14 1.58 8.03 -51.92 -0.42 1.17 16 31 H 0.14 1.97 8.14 -51.92 -0.42 1.55 16 32 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 33 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.09 1.65 8.11 -51.93 -0.42 1.23 16 36 H 0.08 1.36 6.55 -51.93 -0.34 1.02 16 37 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.06 8.03 -51.93 -0.42 0.64 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 0.79 8.02 -51.93 -0.42 0.38 16 43 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.36 7.34 -51.93 -0.38 0.98 16 47 H 0.11 1.26 8.08 -51.93 -0.42 0.84 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -35.14 401.19 -10.23 -45.36 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.82 Total: 3.20 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -0.78 Total: -17.32 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.42 Total: -45.70 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -2.54 Total: -60.18 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 52.13 SS G_CDS: -0.53 Total: 51.60 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.14 -10.23 -45.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360226674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.540 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds