Wall clock time and date at job start Wed Apr 1 2020 03:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00268 * 2 1 4 4 O 1.20820 * 119.99901 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99857 * 180.02562 * 3 2 1 6 6 C 1.52993 * 112.84873 * 294.52902 * 5 3 2 7 7 S 1.81402 * 109.47262 * 292.65549 * 6 5 3 8 8 O 1.42100 * 110.53993 * 63.93895 * 7 6 5 9 9 O 1.42098 * 110.54070 * 287.18940 * 7 6 5 10 10 N 1.65602 * 104.44892 * 175.56344 * 7 6 5 11 11 C 1.46500 * 119.99797 * 270.00179 * 10 7 6 12 12 C 1.50704 * 109.47150 * 265.00118 * 11 10 7 13 13 H 1.08006 * 119.99721 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00207 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99969 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46920 * 60.00358 * 16 14 12 18 18 H 1.48503 * 109.46899 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47524 * 300.00259 * 16 14 12 20 20 C 1.46496 * 120.00171 * 89.99860 * 10 7 6 21 21 C 1.52994 * 109.47406 * 265.00243 * 20 10 7 22 22 C 1.52997 * 117.52342 * 116.28433 * 21 20 10 23 23 C 1.52996 * 60.00229 * 107.47893 * 22 21 20 24 24 C 1.53782 * 113.68984 * 65.80095 * 5 3 2 25 25 C 1.53783 * 87.08261 * 89.12560 * 24 5 3 26 26 C 1.53779 * 113.61223 * 163.33316 * 5 3 2 27 27 H 1.08993 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46437 * 300.00211 * 1 2 3 29 29 H 1.09006 * 109.46671 * 59.99608 * 1 2 3 30 30 H 1.09012 * 109.46938 * 172.65761 * 6 5 3 31 31 H 1.08999 * 109.47730 * 52.65975 * 6 5 3 32 32 H 1.08998 * 109.47203 * 24.99976 * 11 10 7 33 33 H 1.08999 * 109.47031 * 145.00239 * 11 10 7 34 34 H 0.96998 * 120.00148 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.47250 * 144.99615 * 20 10 7 36 36 H 1.09005 * 109.46944 * 25.00196 * 20 10 7 37 37 H 1.08999 * 115.54915 * 330.57879 * 21 20 10 38 38 H 1.08997 * 117.50394 * 214.97607 * 22 21 20 39 39 H 1.09005 * 117.49585 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.50116 * 252.51445 * 23 22 21 41 41 H 1.09000 * 117.49534 * 107.49113 * 23 22 21 42 42 H 1.09004 * 113.61293 * 203.67133 * 24 5 3 43 43 H 1.09002 * 113.61653 * 334.57281 * 24 5 3 44 44 H 1.09000 * 113.61209 * 270.87960 * 25 24 5 45 45 H 1.08996 * 113.61344 * 139.97862 * 25 24 5 46 46 H 1.08997 * 113.61548 * 25.34698 * 26 5 3 47 47 H 1.09000 * 113.61583 * 156.25291 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1908 0.7210 1.2817 7 16 3.7622 1.7980 2.6770 8 8 2.3586 1.7921 2.8986 9 8 4.4877 3.0178 2.6065 10 7 4.3881 1.0266 4.0020 11 6 3.5731 0.0568 4.7378 12 6 2.9041 0.7427 5.9011 13 1 3.0700 1.7956 6.0751 14 6 2.0814 0.0258 6.7438 15 7 1.8807 -1.2566 6.5327 16 14 1.2528 0.8759 8.1861 17 1 0.3849 1.9709 7.6831 18 1 0.4266 -0.1071 8.9319 19 1 2.2878 1.4399 9.0894 20 6 5.7568 1.3139 4.4382 21 6 6.7109 0.2785 3.8395 22 6 7.7757 0.7802 2.8621 23 6 8.1778 0.3373 4.2703 24 6 4.2131 0.7308 -1.2854 25 6 4.0855 2.1524 -1.8578 26 6 4.1108 2.6550 -0.4046 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 5.2747 0.6834 1.1712 31 1 3.8096 -0.2832 1.4673 32 1 2.8136 -0.3571 4.0745 33 1 4.2099 -0.7470 5.1072 34 1 1.3016 -1.7609 7.1253 35 1 5.8083 1.2692 5.5261 36 1 6.0439 2.3101 4.1015 37 1 6.2801 -0.7052 3.6530 38 1 8.0454 0.1267 2.0326 39 1 7.7964 1.8483 2.6451 40 1 8.4632 1.1138 4.9799 41 1 8.7121 -0.6078 4.3671 42 1 5.2447 0.4052 -1.1510 43 1 3.6001 -0.0057 -1.8049 44 1 3.1390 2.3349 -2.3665 45 1 4.9494 2.4665 -2.4435 46 1 3.4152 3.4719 -0.2131 47 1 5.1144 2.8555 -0.0294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360226674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:33 Heat of formation + Delta-G solvation = -126.948190 kcal Electronic energy + Delta-G solvation = -30687.165303 eV Core-core repulsion = 26577.443221 eV Total energy + Delta-G solvation = -4109.722082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.26961 -39.58319 -38.88774 -38.14555 -37.54684 -36.97272 -36.38238 -34.39583 -31.91079 -29.65189 -28.99822 -27.13605 -26.76809 -25.66716 -24.39176 -23.12512 -23.10047 -21.46058 -20.50661 -19.87907 -18.81631 -18.58402 -18.45069 -17.88095 -17.68526 -17.30877 -17.03888 -16.46060 -16.13775 -15.88371 -15.62393 -15.41810 -15.07495 -14.64046 -14.41604 -14.29980 -14.08878 -13.96285 -13.50860 -13.49724 -13.42650 -13.19194 -13.12291 -13.03455 -12.94167 -12.83626 -12.53873 -12.39415 -12.22433 -12.20853 -12.05281 -12.03306 -11.91146 -11.80454 -11.67628 -11.40158 -11.28556 -11.14337 -10.73271 -10.59458 -9.75467 -8.21767 -6.32147 -0.76058 0.87210 1.34977 1.38900 1.45758 1.49176 1.72627 2.38920 2.82808 2.97669 3.03490 3.09170 3.17222 3.24762 3.41194 3.57252 3.72171 3.90111 3.99491 4.06666 4.13151 4.19340 4.25672 4.27455 4.36648 4.45520 4.52647 4.62796 4.69428 4.75430 4.88883 4.90581 4.92849 4.96555 5.01386 5.03379 5.13361 5.17259 5.17523 5.35674 5.37804 5.39571 5.47330 5.69279 5.92236 6.11176 6.47325 6.74181 7.35525 8.85575 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.005203 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.108370 B = 5380.687466 C = 7286.830241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.353 6.353 3 C 0.468 3.532 4 O -0.522 6.522 5 C -0.093 4.093 6 C -0.595 4.595 7 S 2.583 3.417 8 O -0.993 6.993 9 O -0.980 6.980 10 N -0.986 5.986 11 C 0.273 3.727 12 C -0.546 4.546 13 H 0.044 0.956 14 C 0.015 3.985 15 N -0.922 5.922 16 Si 0.950 3.050 17 H -0.283 1.283 18 H -0.272 1.272 19 H -0.263 1.263 20 C 0.144 3.856 21 C -0.197 4.197 22 C -0.173 4.173 23 C -0.166 4.166 24 C -0.090 4.090 25 C -0.130 4.130 26 C -0.151 4.151 27 H 0.138 0.862 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.190 0.810 31 H 0.152 0.848 32 H 0.015 0.985 33 H 0.035 0.965 34 H 0.268 0.732 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.062 0.938 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.301 -0.898 -17.767 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.310 3.690 4 O -0.411 6.411 5 C -0.096 4.096 6 C -0.726 4.726 7 S 2.680 3.320 8 O -0.984 6.984 9 O -0.971 6.971 10 N -0.823 5.823 11 C 0.150 3.850 12 C -0.586 4.586 13 H 0.063 0.937 14 C -0.184 4.184 15 N -0.561 5.561 16 Si 0.774 3.226 17 H -0.209 1.209 18 H -0.197 1.197 19 H -0.188 1.188 20 C 0.019 3.981 21 C -0.217 4.217 22 C -0.210 4.210 23 C -0.204 4.204 24 C -0.129 4.129 25 C -0.168 4.168 26 C -0.189 4.189 27 H 0.156 0.844 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.208 0.792 31 H 0.170 0.830 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.156 0.844 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.477 0.055 -17.616 20.496 hybrid contribution -1.273 -0.075 1.276 1.804 sum 9.204 -0.020 -16.340 18.754 Atomic orbital electron populations 1.23633 0.74695 1.06124 1.02436 1.86423 1.25068 1.32125 1.83293 1.23492 0.91885 0.81758 0.71827 1.90652 1.67512 1.37357 1.45564 1.21665 0.86490 1.03304 0.98184 1.30575 1.14127 1.16656 1.11278 1.05476 0.73756 0.76163 0.76563 1.93578 1.32921 1.87292 1.84564 1.93467 1.73878 1.42495 1.87236 1.57241 1.22975 1.59048 1.43050 1.18595 0.88826 0.87198 0.90384 1.21756 1.28667 0.95809 1.12339 0.93744 1.25656 0.96750 0.95570 1.00445 1.69977 1.38687 1.07875 1.39604 0.85745 0.78915 0.78430 0.79465 1.20874 1.19656 1.18759 1.20949 0.78987 0.97709 1.00465 1.22826 0.91335 1.00873 1.06620 1.23297 1.01373 1.02531 0.93780 1.22985 0.95171 1.03874 0.98323 1.23109 1.03265 0.97697 0.88788 1.22880 1.04115 0.95319 0.94456 1.23490 1.03308 0.92668 0.99399 0.84387 0.93681 0.90385 0.79203 0.83014 0.96736 0.94734 0.92333 0.91005 0.89518 0.87446 0.86292 0.88148 0.88518 0.87402 0.84366 0.89122 0.90745 0.86615 0.91949 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 10.56 113.37 1.20 1.84 16 2 O -0.35 -11.08 10.56 -51.38 -0.54 -11.63 16 3 C 0.47 15.93 5.38 71.24 0.38 16.31 16 4 O -0.52 -21.13 15.69 21.98 0.34 -20.79 16 5 C -0.09 -2.45 0.89 -52.40 -0.05 -2.49 16 6 C -0.59 -15.99 5.57 71.98 0.40 -15.59 16 7 S 2.58 105.96 4.96 -56.49 -0.28 105.68 16 8 O -0.99 -52.36 15.99 -127.65 -2.04 -54.40 16 9 O -0.98 -40.75 15.88 -127.65 -2.03 -42.78 16 10 N -0.99 -41.56 2.70 -519.85 -1.40 -42.96 16 11 C 0.27 14.09 5.01 85.63 0.43 14.52 16 12 C -0.55 -32.11 9.38 25.60 0.24 -31.87 16 13 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 14 C 0.02 0.89 5.46 84.65 0.46 1.35 16 15 N -0.92 -54.67 13.29 21.45 0.28 -54.38 16 16 Si 0.95 46.07 29.54 68.60 2.03 48.09 16 17 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.14 5.01 5.94 86.38 0.51 5.52 16 21 C -0.20 -5.06 6.01 -10.80 -0.06 -5.13 16 22 C -0.17 -3.14 10.18 30.59 0.31 -2.83 16 23 C -0.17 -3.32 10.25 30.59 0.31 -3.01 16 24 C -0.09 -1.38 7.22 31.12 0.22 -1.15 16 25 C -0.13 -2.10 7.81 31.12 0.24 -1.86 16 26 C -0.15 -3.63 6.10 31.12 0.19 -3.44 16 27 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.04 1.44 8.13 -2.39 -0.02 1.42 16 29 H 0.08 1.77 8.13 -2.38 -0.02 1.76 16 30 H 0.19 3.28 8.03 -2.38 -0.02 3.26 16 31 H 0.15 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.01 0.81 7.61 -2.39 -0.02 0.79 16 33 H 0.03 1.78 8.11 -2.39 -0.02 1.76 16 34 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.07 2.70 8.11 -2.38 -0.02 2.68 16 36 H 0.09 2.86 6.55 -2.38 -0.02 2.85 16 37 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.79 8.03 -2.38 -0.02 1.77 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.14 1.16 8.02 -2.38 -0.02 1.14 16 43 H 0.09 1.28 8.10 -2.39 -0.02 1.26 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.88 7.34 -2.39 -0.02 1.86 16 47 H 0.13 2.54 8.08 -2.39 -0.02 2.52 16 Total: -1.00 -82.71 401.19 2.11 -80.61 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.95 Total: 20.37 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.80 Total: -27.82 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -1.12 Total: -97.35 kcal Atomic # 8 Polarization: -125.32 SS G_CDS: -4.27 Total: -129.59 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: 105.96 SS G_CDS: -0.28 Total: 105.68 kcal Total: -82.71 2.11 -80.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360226674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.342 kcal (2) G-P(sol) polarization free energy of solvation -82.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds