Wall clock time and date at job start Wed Apr 1 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00092 * 2 1 4 4 O 1.20824 * 119.99478 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99849 * 179.97438 * 3 2 1 6 6 C 1.53599 * 111.37721 * 298.98410 * 5 3 2 7 7 C 1.53977 * 105.97866 * 219.72619 * 6 5 3 8 8 C 1.53972 * 104.88984 * 29.46930 * 7 6 5 9 9 C 1.53604 * 105.97582 * 330.52124 * 8 7 6 10 10 H 1.09001 * 111.37751 * 140.29854 * 9 8 7 11 11 C 1.53816 * 109.42105 * 263.90708 * 9 8 7 12 12 N 1.48902 * 105.49635 * 96.14970 * 11 9 8 13 13 S 1.65600 * 126.57659 * 211.12346 * 12 11 9 14 14 O 1.42104 * 104.27726 * 26.28937 * 13 12 11 15 15 O 1.42099 * 104.27584 * 154.14280 * 13 12 11 16 16 C 1.81393 * 104.45123 * 270.21453 * 13 12 11 17 17 C 1.53001 * 109.47179 * 180.02562 * 16 13 12 18 18 C 1.52994 * 109.47106 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47148 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99992 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99807 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99793 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47288 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47356 * 120.00146 * 23 21 19 26 26 H 1.48503 * 109.46906 * 239.99763 * 23 21 19 27 27 C 1.47232 * 106.72009 * 31.30506 * 12 11 9 28 28 H 1.08993 * 109.47648 * 300.00196 * 1 2 3 29 29 H 1.09006 * 109.47098 * 60.00447 * 1 2 3 30 30 H 1.09005 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09008 * 110.14906 * 100.59942 * 6 5 3 32 32 H 1.09001 * 110.15110 * 338.85816 * 6 5 3 33 33 H 1.09000 * 110.35250 * 148.32299 * 7 6 5 34 34 H 1.09000 * 110.35678 * 270.50698 * 7 6 5 35 35 H 1.09000 * 110.15345 * 89.64695 * 8 7 6 36 36 H 1.08994 * 110.15103 * 211.39754 * 8 7 6 37 37 H 1.09007 * 110.08014 * 215.22276 * 11 9 8 38 38 H 1.08999 * 110.08449 * 336.79079 * 11 9 8 39 39 H 1.08998 * 109.47113 * 300.00101 * 16 13 12 40 40 H 1.09008 * 109.46987 * 60.00181 * 16 13 12 41 41 H 1.08998 * 109.47149 * 300.00040 * 17 16 13 42 42 H 1.09003 * 109.46609 * 60.00053 * 17 16 13 43 43 H 1.08997 * 109.47582 * 300.00264 * 18 17 16 44 44 H 1.09000 * 109.47665 * 60.00041 * 18 17 16 45 45 H 0.97004 * 119.99461 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.08397 * 209.44483 * 27 12 11 47 47 H 1.08999 * 110.13196 * 87.89851 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1612 0.6122 1.2521 7 6 5.3302 1.5121 1.6931 8 6 4.9337 2.9280 1.2364 9 6 4.0553 2.7399 -0.0096 10 1 3.2191 3.4391 -0.0155 11 6 4.9204 2.8888 -1.2726 12 7 5.2915 1.5016 -1.6665 13 16 6.6872 1.0305 -2.4231 14 8 7.6377 2.0197 -2.0526 15 8 6.8541 -0.3268 -2.0371 16 6 6.3043 1.1466 -4.1924 17 6 7.5304 0.7311 -5.0078 18 6 7.2077 0.8297 -6.5001 19 6 8.4152 0.4198 -7.3033 20 1 9.3219 0.1187 -6.7997 21 6 8.3619 0.4282 -8.6811 22 7 7.2576 0.7944 -9.2942 23 14 9.8584 -0.0805 -9.6766 24 1 10.9651 -0.4447 -8.7558 25 1 9.5145 -1.2499 -10.5249 26 1 10.2855 1.0492 -10.5407 27 6 4.1759 0.6323 -1.2571 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 4.5262 -0.3862 1.0109 32 1 3.4108 0.5579 2.0409 33 1 5.4445 1.4813 2.7767 34 1 6.2539 1.1996 1.2061 35 1 4.3692 3.4315 2.0212 36 1 5.8238 3.5044 0.9846 37 1 4.3458 3.3675 -2.0656 38 1 5.8115 3.4754 -1.0489 39 1 5.4706 0.4852 -4.4279 40 1 6.0344 2.1735 -4.4391 41 1 8.3644 1.3922 -4.7724 42 1 7.7999 -0.2958 -4.7610 43 1 6.3735 0.1689 -6.7359 44 1 6.9384 1.8567 -6.7466 45 1 7.2204 0.8006 -10.2635 46 1 4.5454 -0.3667 -1.0255 47 1 3.4300 0.5807 -2.0501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364696232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:03 Heat of formation + Delta-G solvation = -170.323591 kcal Electronic energy + Delta-G solvation = -29310.790387 eV Core-core repulsion = 25199.187406 eV Total energy + Delta-G solvation = -4111.602981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53910 -39.51393 -36.96585 -36.77346 -35.80267 -34.79576 -34.68017 -32.19995 -31.69406 -29.78818 -27.92987 -27.79396 -26.17342 -24.12284 -23.52967 -22.59616 -20.89729 -20.57920 -19.57749 -18.95564 -18.09672 -17.55614 -17.20350 -16.68619 -16.56134 -15.98250 -15.74751 -15.45413 -14.77978 -14.52853 -14.50015 -14.05295 -14.00023 -13.94903 -13.75550 -13.41901 -12.69820 -12.61336 -12.50637 -12.30247 -12.20688 -11.99030 -11.86004 -11.80577 -11.76433 -11.53106 -11.40319 -11.28367 -11.21371 -11.15574 -11.10339 -10.94601 -10.92941 -10.85600 -10.53784 -10.41768 -9.97567 -9.54400 -9.24347 -8.97988 -8.42347 -6.06927 -4.10008 0.33543 1.79925 2.25567 2.69738 3.28658 3.36229 3.41087 3.66259 3.92743 4.02094 4.12296 4.27807 4.41569 4.52171 4.74894 4.79419 4.82415 4.83216 4.87654 4.97937 5.07773 5.11481 5.16414 5.23536 5.27450 5.28538 5.29687 5.44039 5.56051 5.56413 5.61427 5.69436 5.76146 5.81837 5.87869 5.88854 6.00097 6.04030 6.12828 6.27358 6.42300 6.84941 7.35001 7.55702 7.65112 7.91124 8.31352 8.96452 9.54839 11.04339 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002554 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.715369 B =10959.251998 C =11785.770533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.483 3.517 4 O -0.500 6.500 5 C -0.062 4.062 6 C -0.106 4.106 7 C -0.123 4.123 8 C -0.118 4.118 9 C -0.089 4.089 10 H 0.112 0.888 11 C 0.122 3.878 12 N -1.016 6.016 13 S 2.614 3.386 14 O -0.954 6.954 15 O -0.955 6.955 16 C -0.608 4.608 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.059 0.941 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.138 3.862 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.101 0.899 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 1.628 23.500 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.325 3.675 4 O -0.387 6.387 5 C -0.065 4.065 6 C -0.143 4.143 7 C -0.160 4.160 8 C -0.156 4.156 9 C -0.109 4.109 10 H 0.130 0.870 11 C -0.003 4.003 12 N -0.852 5.852 13 S 2.712 3.288 14 O -0.944 6.944 15 O -0.946 6.946 16 C -0.740 4.740 17 C -0.145 4.145 18 C -0.008 4.008 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.012 3.988 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.119 0.881 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.553 1.651 23.750 26.914 hybrid contribution -0.163 -0.054 -1.289 1.301 sum -12.716 1.597 22.461 25.860 Atomic orbital electron populations 1.23322 0.76058 1.03965 1.02630 1.86534 1.23560 1.32988 1.83774 1.23198 0.91022 0.81465 0.71855 1.90654 1.66668 1.36358 1.45046 1.21656 0.86908 0.98731 0.99207 1.22177 0.97840 0.99855 0.94439 1.22145 0.98298 0.94459 1.01103 1.22213 0.99421 0.97565 0.96356 1.22457 0.98741 0.93831 0.95831 0.87013 1.22301 0.99455 0.82822 0.95690 1.59268 1.35848 1.15273 1.74838 1.05057 0.72160 0.73958 0.77591 1.93563 1.57700 1.61152 1.82027 1.93560 1.84070 1.35308 1.81641 1.30612 1.10238 1.11174 1.22020 1.21513 0.92290 1.00847 0.99892 1.19066 0.97330 0.97718 0.86669 1.21290 0.98712 1.45081 0.91318 0.92296 1.25025 0.96160 0.95227 0.97998 1.69969 1.26500 1.48018 1.08922 0.86498 0.82957 0.78244 0.80118 1.19583 1.20928 1.20931 1.21686 0.88624 0.94689 0.93823 0.91876 0.91697 0.87846 0.89553 0.91095 0.90925 0.90938 0.91241 0.90322 0.90958 0.88638 0.85416 0.85368 0.91559 0.91551 0.96108 0.96100 0.92940 0.88057 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.16 10.55 -39.27 -0.41 -3.57 16 3 C 0.48 4.84 6.43 36.01 0.23 5.07 16 4 O -0.50 -6.02 15.16 -18.75 -0.28 -6.30 16 5 C -0.06 -0.58 0.95 -154.16 -0.15 -0.72 16 6 C -0.11 -0.86 5.89 -25.91 -0.15 -1.01 16 7 C -0.12 -1.00 6.84 -25.72 -0.18 -1.18 16 8 C -0.12 -0.94 6.31 -25.91 -0.16 -1.10 16 9 C -0.09 -0.79 3.39 -89.12 -0.30 -1.09 16 10 H 0.11 1.02 6.68 -51.93 -0.35 0.67 16 11 C 0.12 1.19 6.74 -2.29 -0.02 1.17 16 12 N -1.02 -11.59 3.66 -111.05 -0.41 -12.00 16 13 S 2.61 38.34 5.69 -107.50 -0.61 37.72 16 14 O -0.95 -16.26 17.33 -57.54 -1.00 -17.26 16 15 O -0.96 -16.24 17.28 -57.54 -0.99 -17.23 16 16 C -0.61 -9.41 6.18 37.16 0.23 -9.18 16 17 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 18 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 19 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 23 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 C 0.14 1.39 6.26 -3.21 -0.02 1.37 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.68 7.29 -51.92 -0.38 0.31 16 32 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.62 7.28 -51.93 -0.38 0.24 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.92 6.79 -51.93 -0.35 0.56 16 39 H 0.13 1.78 8.14 -51.92 -0.42 1.35 16 40 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.10 1.01 6.73 -51.93 -0.35 0.66 16 47 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -35.31 390.42 -9.90 -45.22 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.66 Total: -2.55 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -0.14 Total: -20.61 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.33 Total: -37.84 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -2.69 Total: -44.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 38.34 SS G_CDS: -0.61 Total: 37.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.31 -9.90 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364696232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.108 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds