Wall clock time and date at job start Wed Apr 1 2020 03:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00092 * 2 1 4 4 O 1.20824 * 119.99478 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99849 * 179.97438 * 3 2 1 6 6 C 1.53599 * 111.37721 * 298.98410 * 5 3 2 7 7 C 1.53977 * 105.97866 * 219.72619 * 6 5 3 8 8 C 1.53972 * 104.88984 * 29.46930 * 7 6 5 9 9 C 1.53604 * 105.97582 * 330.52124 * 8 7 6 10 10 H 1.09001 * 111.37751 * 140.29854 * 9 8 7 11 11 C 1.53816 * 109.42105 * 263.90708 * 9 8 7 12 12 N 1.48902 * 105.49635 * 96.14970 * 11 9 8 13 13 S 1.65600 * 126.57659 * 211.12346 * 12 11 9 14 14 O 1.42104 * 104.27726 * 26.28937 * 13 12 11 15 15 O 1.42099 * 104.27584 * 154.14280 * 13 12 11 16 16 C 1.81393 * 104.45123 * 270.21453 * 13 12 11 17 17 C 1.53001 * 109.47179 * 180.02562 * 16 13 12 18 18 C 1.52994 * 109.47106 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47148 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99992 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99807 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99793 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47288 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47356 * 120.00146 * 23 21 19 26 26 H 1.48503 * 109.46906 * 239.99763 * 23 21 19 27 27 C 1.47232 * 106.72009 * 31.30506 * 12 11 9 28 28 H 1.08993 * 109.47648 * 300.00196 * 1 2 3 29 29 H 1.09006 * 109.47098 * 60.00447 * 1 2 3 30 30 H 1.09005 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09008 * 110.14906 * 100.59942 * 6 5 3 32 32 H 1.09001 * 110.15110 * 338.85816 * 6 5 3 33 33 H 1.09000 * 110.35250 * 148.32299 * 7 6 5 34 34 H 1.09000 * 110.35678 * 270.50698 * 7 6 5 35 35 H 1.09000 * 110.15345 * 89.64695 * 8 7 6 36 36 H 1.08994 * 110.15103 * 211.39754 * 8 7 6 37 37 H 1.09007 * 110.08014 * 215.22276 * 11 9 8 38 38 H 1.08999 * 110.08449 * 336.79079 * 11 9 8 39 39 H 1.08998 * 109.47113 * 300.00101 * 16 13 12 40 40 H 1.09008 * 109.46987 * 60.00181 * 16 13 12 41 41 H 1.08998 * 109.47149 * 300.00040 * 17 16 13 42 42 H 1.09003 * 109.46609 * 60.00053 * 17 16 13 43 43 H 1.08997 * 109.47582 * 300.00264 * 18 17 16 44 44 H 1.09000 * 109.47665 * 60.00041 * 18 17 16 45 45 H 0.97004 * 119.99461 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.08397 * 209.44483 * 27 12 11 47 47 H 1.08999 * 110.13196 * 87.89851 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1612 0.6122 1.2521 7 6 5.3302 1.5121 1.6931 8 6 4.9337 2.9280 1.2364 9 6 4.0553 2.7399 -0.0096 10 1 3.2191 3.4391 -0.0155 11 6 4.9204 2.8888 -1.2726 12 7 5.2915 1.5016 -1.6665 13 16 6.6872 1.0305 -2.4231 14 8 7.6377 2.0197 -2.0526 15 8 6.8541 -0.3268 -2.0371 16 6 6.3043 1.1466 -4.1924 17 6 7.5304 0.7311 -5.0078 18 6 7.2077 0.8297 -6.5001 19 6 8.4152 0.4198 -7.3033 20 1 9.3219 0.1187 -6.7997 21 6 8.3619 0.4282 -8.6811 22 7 7.2576 0.7944 -9.2942 23 14 9.8584 -0.0805 -9.6766 24 1 10.9651 -0.4447 -8.7558 25 1 9.5145 -1.2499 -10.5249 26 1 10.2855 1.0492 -10.5407 27 6 4.1759 0.6323 -1.2571 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 4.5262 -0.3862 1.0109 32 1 3.4108 0.5579 2.0409 33 1 5.4445 1.4813 2.7767 34 1 6.2539 1.1996 1.2061 35 1 4.3692 3.4315 2.0212 36 1 5.8238 3.5044 0.9846 37 1 4.3458 3.3675 -2.0656 38 1 5.8115 3.4754 -1.0489 39 1 5.4706 0.4852 -4.4279 40 1 6.0344 2.1735 -4.4391 41 1 8.3644 1.3922 -4.7724 42 1 7.7999 -0.2958 -4.7610 43 1 6.3735 0.1689 -6.7359 44 1 6.9384 1.8567 -6.7466 45 1 7.2204 0.8006 -10.2635 46 1 4.5454 -0.3667 -1.0255 47 1 3.4300 0.5807 -2.0501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364696232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:02 Heat of formation + Delta-G solvation = -193.295574 kcal Electronic energy + Delta-G solvation = -29311.786527 eV Core-core repulsion = 25199.187406 eV Total energy + Delta-G solvation = -4112.599121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27745 -40.24148 -38.25112 -37.52361 -37.09536 -36.48765 -35.58004 -34.17955 -32.40109 -30.54086 -29.67031 -28.46106 -26.88495 -25.69047 -24.71247 -23.30859 -22.32719 -21.55622 -20.30707 -20.05847 -18.95739 -18.72198 -18.39315 -17.93118 -17.41976 -17.16050 -17.05460 -16.52213 -16.25029 -15.89542 -15.42235 -14.96860 -14.75063 -14.68109 -14.59918 -14.49804 -14.16430 -14.04769 -13.55374 -13.40448 -13.39460 -13.22449 -13.02631 -13.01988 -12.89877 -12.78572 -12.64268 -12.60234 -12.22574 -12.17591 -12.04187 -11.90288 -11.81957 -11.79907 -11.76462 -11.62626 -11.38680 -11.27753 -11.08926 -10.59274 -10.02753 -8.23835 -6.34948 -0.86941 1.03521 1.39346 1.40003 1.50355 1.53400 1.72710 2.39161 2.75220 2.84779 3.09858 3.23512 3.26241 3.44192 3.71679 3.84620 3.86195 4.11641 4.15145 4.20203 4.29738 4.32270 4.34803 4.35818 4.45061 4.54723 4.57379 4.61974 4.72133 4.74600 4.80952 4.90031 4.90840 4.94792 4.99844 5.02711 5.06764 5.16024 5.24159 5.32139 5.32671 5.41056 5.43998 5.60645 5.78030 6.18125 6.62311 6.80890 7.34598 8.87934 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002554 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.715369 B =10959.251998 C =11785.770533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.487 3.513 4 O -0.523 6.523 5 C -0.062 4.062 6 C -0.105 4.105 7 C -0.124 4.124 8 C -0.118 4.118 9 C -0.086 4.086 10 H 0.112 0.888 11 C 0.114 3.886 12 N -1.012 6.012 13 S 2.645 3.355 14 O -0.977 6.977 15 O -0.978 6.978 16 C -0.612 4.612 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.551 4.551 20 H 0.061 0.939 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.277 1.277 27 C 0.130 3.870 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.102 0.898 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 1.394 24.569 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.330 3.670 4 O -0.412 6.412 5 C -0.064 4.064 6 C -0.142 4.142 7 C -0.162 4.162 8 C -0.155 4.155 9 C -0.106 4.106 10 H 0.130 0.870 11 C -0.010 4.010 12 N -0.850 5.850 13 S 2.742 3.258 14 O -0.967 6.967 15 O -0.968 6.968 16 C -0.742 4.742 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.589 4.589 20 H 0.079 0.921 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.788 3.212 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.202 1.202 27 C 0.005 3.995 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.807 1.404 24.814 27.960 hybrid contribution -0.195 0.019 -1.578 1.590 sum -13.002 1.423 23.236 26.665 Atomic orbital electron populations 1.23587 0.74599 1.05788 1.02658 1.86529 1.25034 1.32366 1.83341 1.23265 0.91162 0.81416 0.71182 1.90645 1.67184 1.37107 1.46277 1.21658 0.86617 0.98950 0.99224 1.22205 0.98039 0.99763 0.94238 1.22162 0.97450 0.94511 1.02030 1.22237 0.99407 0.97576 0.96286 1.22446 0.98656 0.93672 0.95805 0.86973 1.22545 0.99941 0.81759 0.96725 1.58914 1.35494 1.16535 1.74013 1.03910 0.72206 0.72915 0.76780 1.93529 1.59270 1.61759 1.82186 1.93526 1.84819 1.36712 1.81791 1.30598 1.08592 1.12453 1.22584 1.21321 0.94572 1.01300 0.97351 1.18961 0.95891 0.95877 0.90000 1.21767 0.99725 1.45191 0.92248 0.92077 1.25948 0.99277 0.95115 0.99279 1.70080 1.28590 1.48941 1.09421 0.85417 0.79242 0.78064 0.78468 1.18696 1.20198 1.20230 1.21878 0.88336 0.94563 0.94754 0.91561 0.92003 0.85201 0.89464 0.89948 0.89283 0.92681 0.89908 0.90349 0.89526 0.88549 0.83891 0.83839 0.91442 0.91411 0.97928 0.97943 0.92626 0.87948 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.80 10.55 -51.44 -0.54 -6.35 16 3 C 0.49 9.04 6.43 71.24 0.46 9.50 16 4 O -0.52 -11.94 15.16 21.97 0.33 -11.61 16 5 C -0.06 -1.05 0.95 -51.96 -0.05 -1.09 16 6 C -0.10 -1.53 5.89 31.13 0.18 -1.35 16 7 C -0.12 -1.83 6.84 31.25 0.21 -1.62 16 8 C -0.12 -1.67 6.31 31.13 0.20 -1.47 16 9 C -0.09 -1.40 3.39 -9.82 -0.03 -1.43 16 10 H 0.11 1.87 6.68 -2.39 -0.02 1.86 16 11 C 0.11 2.06 6.74 86.19 0.58 2.64 16 12 N -1.01 -21.84 3.66 -505.26 -1.85 -23.69 16 13 S 2.64 75.53 5.69 -56.49 -0.32 75.21 16 14 O -0.98 -32.68 17.33 -127.65 -2.21 -34.89 16 15 O -0.98 -32.60 17.28 -127.65 -2.21 -34.81 16 16 C -0.61 -18.55 6.18 71.98 0.44 -18.10 16 17 C -0.11 -4.32 5.16 30.59 0.16 -4.16 16 18 C 0.03 1.60 4.97 29.85 0.15 1.75 16 19 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 20 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 21 C 0.00 0.11 5.46 84.66 0.46 0.57 16 22 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 23 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 27 C 0.13 2.45 6.26 86.52 0.54 2.99 16 28 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 29 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 30 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.09 1.26 7.29 -2.38 -0.02 1.24 16 32 H 0.08 1.01 7.84 -2.39 -0.02 1.00 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.12 7.28 -2.39 -0.02 1.10 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.10 1.73 6.79 -2.39 -0.02 1.72 16 39 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 40 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 46 H 0.10 1.91 6.73 -2.39 -0.02 1.90 16 47 H 0.08 1.34 7.86 -2.39 -0.02 1.32 16 Total: -1.00 -75.22 390.42 1.20 -74.02 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.95 Total: 12.97 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 4.73 Total: -41.45 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.57 Total: -79.30 kcal Atomic # 8 Polarization: -83.03 SS G_CDS: -4.63 Total: -87.65 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 75.53 SS G_CDS: -0.32 Total: 75.21 kcal Total: -75.22 1.20 -74.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364696232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.278 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds