Wall clock time and date at job start Wed Apr 1 2020 03:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99687 * 2 1 4 4 O 1.20826 * 120.00121 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00008 * 179.97438 * 3 2 1 6 6 C 1.53239 * 105.53686 * 298.55128 * 5 3 2 7 7 N 1.47600 * 104.56954 * 278.79048 * 6 5 3 8 8 S 1.65603 * 126.05647 * 150.13883 * 7 6 5 9 9 O 1.42105 * 104.27307 * 206.07301 * 8 7 6 10 10 O 1.42095 * 104.27924 * 333.92695 * 8 7 6 11 11 C 1.81400 * 104.44931 * 90.00427 * 8 7 6 12 12 C 1.53000 * 109.47243 * 179.97438 * 11 8 7 13 13 C 1.50697 * 109.46990 * 179.97438 * 12 11 8 14 14 H 1.07995 * 120.00374 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99812 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00142 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99804 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47129 * 90.00390 * 17 15 13 19 19 H 1.48503 * 109.47003 * 210.00249 * 17 15 13 20 20 H 1.48497 * 109.47457 * 330.00166 * 17 15 13 21 21 C 1.47097 * 107.79700 * 330.27926 * 7 6 5 22 22 C 1.51976 * 105.81094 * 186.79235 * 5 3 2 23 23 H 1.08999 * 110.59320 * 332.65487 * 22 5 3 24 24 C 1.52903 * 112.27363 * 207.56443 * 22 5 3 25 25 C 1.52818 * 109.95767 * 50.96282 * 24 22 5 26 26 C 1.52816 * 108.21698 * 294.04682 * 25 24 22 27 27 C 1.48875 * 105.46706 * 60.00926 * 5 3 2 28 28 H 1.08997 * 109.47495 * 60.00222 * 1 2 3 29 29 H 1.09006 * 109.46649 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47283 * 299.99546 * 1 2 3 31 31 H 1.09002 * 110.43930 * 37.60125 * 6 5 3 32 32 H 1.08998 * 110.43467 * 159.98570 * 6 5 3 33 33 H 1.09004 * 109.46852 * 299.99545 * 11 8 7 34 34 H 1.08998 * 109.47069 * 59.99599 * 11 8 7 35 35 H 1.09000 * 109.46657 * 299.99917 * 12 11 8 36 36 H 1.08997 * 109.47170 * 59.99412 * 12 11 8 37 37 H 0.97000 * 119.99740 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.71769 * 257.96451 * 21 7 6 39 39 H 1.08995 * 109.95638 * 137.08581 * 21 7 6 40 40 H 1.08994 * 109.38660 * 171.10830 * 24 22 5 41 41 H 1.08998 * 109.38953 * 290.81293 * 24 22 5 42 42 H 1.09004 * 109.71056 * 53.72311 * 25 24 22 43 43 H 1.08997 * 109.71505 * 174.36404 * 25 24 22 44 44 H 1.08995 * 109.32544 * 182.07026 * 26 25 24 45 45 H 1.09009 * 109.32071 * 301.70451 * 26 25 24 46 46 H 1.08998 * 108.18577 * 271.60213 * 27 5 3 47 47 H 1.08998 * 108.18672 * 28.23604 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0127 0.5921 1.2977 7 7 3.8470 1.6262 2.3378 8 16 3.4961 1.3563 3.9336 9 8 2.8494 2.5488 4.3567 10 8 2.8114 0.1112 3.9361 11 6 5.1167 1.1933 4.7321 12 6 4.9247 0.9387 6.2285 13 6 6.2711 0.8026 6.8916 14 1 7.1734 0.8887 6.3046 15 6 6.3509 0.5672 8.2479 16 7 7.5258 0.4490 8.8268 17 14 4.7901 0.4177 9.2632 18 1 4.3538 -1.0014 9.2943 19 1 5.0537 0.8849 10.6480 20 1 3.7219 1.2507 8.6548 21 6 4.0457 2.9382 1.7030 22 6 3.9037 2.7467 0.1734 23 1 3.1024 3.3724 -0.2197 24 6 5.2515 3.1095 -0.4508 25 6 5.3118 2.6045 -1.8919 26 6 5.2902 1.0768 -1.8640 27 6 4.0009 0.5793 -1.2418 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.3791 -0.2685 1.5123 32 1 5.0567 0.2869 1.2274 33 1 5.6584 0.3582 4.2876 34 1 5.6857 2.1121 4.5902 35 1 4.3833 1.7740 6.6725 36 1 4.3555 0.0201 6.3706 37 1 7.5819 0.2838 9.7809 38 1 5.0421 3.3131 1.9376 39 1 3.2930 3.6416 2.0590 40 1 5.3749 4.1924 -0.4414 41 1 6.0534 2.6503 0.1274 42 1 4.4500 2.9744 -2.4474 43 1 6.2309 2.9507 -2.3646 44 1 5.3697 0.6963 -2.8823 45 1 6.1343 0.7147 -1.2769 46 1 4.1193 -0.4802 -1.0148 47 1 3.2064 0.6765 -1.9817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375146689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:00 Heat of formation + Delta-G solvation = -163.085091 kcal Electronic energy + Delta-G solvation = -30267.600030 eV Core-core repulsion = 26156.310934 eV Total energy + Delta-G solvation = -4111.289096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81569 -39.23638 -36.77844 -36.58505 -35.85805 -35.57221 -33.96745 -32.80729 -31.50028 -30.93479 -28.02709 -27.52157 -26.00665 -24.26191 -23.78063 -22.16059 -21.19457 -21.09382 -18.95491 -18.77481 -17.97519 -17.57926 -17.13149 -16.88985 -16.57059 -15.72169 -15.67429 -15.12527 -14.76715 -14.52542 -14.37055 -14.25113 -14.16259 -13.78413 -13.48858 -13.33512 -13.13363 -12.89184 -12.80452 -12.35761 -12.29003 -12.10102 -11.94591 -11.91767 -11.75523 -11.63989 -11.47042 -11.26923 -11.23897 -11.21905 -10.94900 -10.86333 -10.71763 -10.46784 -10.44845 -10.26754 -10.16932 -9.75357 -9.44589 -8.92236 -8.67668 -6.18039 -4.19421 0.54765 2.04274 2.45180 2.85306 3.25609 3.33020 3.37454 3.86836 4.04523 4.13229 4.21854 4.34703 4.47644 4.61855 4.69079 4.70944 4.83691 4.90976 4.92992 5.02049 5.09956 5.13357 5.17093 5.29374 5.31621 5.35077 5.46682 5.48555 5.49061 5.53483 5.59268 5.60511 5.67716 5.76697 5.83546 5.87483 5.96321 6.01074 6.15200 6.21933 6.25451 6.33748 6.79027 6.91488 7.52796 7.53651 8.34909 8.82851 9.41581 10.94277 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003359 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.073943 B = 8334.199518 C = 9224.994904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.502 6.502 5 C -0.034 4.034 6 C 0.124 3.876 7 N -1.020 6.020 8 S 2.599 3.401 9 O -0.958 6.958 10 O -0.959 6.959 11 C -0.579 4.579 12 C -0.007 4.007 13 C -0.519 4.519 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.868 3.132 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.262 1.262 21 C 0.118 3.882 22 C -0.085 4.085 23 H 0.113 0.887 24 C -0.112 4.112 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.101 4.101 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.032 0.968 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 1.226 -25.277 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.302 3.698 4 O -0.389 6.389 5 C -0.037 4.037 6 C -0.001 4.001 7 N -0.856 5.856 8 S 2.699 3.301 9 O -0.948 6.948 10 O -0.950 6.950 11 C -0.712 4.712 12 C -0.047 4.047 13 C -0.558 4.558 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.695 3.305 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.007 4.007 22 C -0.105 4.105 23 H 0.131 0.869 24 C -0.150 4.150 25 C -0.159 4.159 26 C -0.152 4.152 27 C -0.139 4.139 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.848 1.429 -24.645 25.904 hybrid contribution -0.323 -0.086 0.675 0.754 sum -8.171 1.342 -23.970 25.360 Atomic orbital electron populations 1.23295 0.76245 1.03865 1.02511 1.86493 1.23496 1.33104 1.83935 1.24062 0.92494 0.81524 0.71674 1.90625 1.66889 1.36233 1.45117 1.20210 0.87421 0.98351 0.97733 1.21928 1.02740 0.91397 0.84070 1.58964 1.88614 1.12952 1.25072 1.05479 0.78530 0.74148 0.71919 1.93550 1.73148 1.48030 1.80092 1.93541 1.71617 1.44884 1.84954 1.30325 1.19571 1.10997 1.10336 1.19424 1.00592 0.97543 0.87122 1.20831 0.90932 1.50557 0.93505 0.90361 1.24977 0.96143 0.94200 0.97717 1.69878 1.23396 1.48680 1.11333 0.86937 0.84165 0.79411 0.80033 1.19626 1.20688 1.18644 1.22091 1.02076 0.84827 0.91710 1.21865 0.99850 0.93224 0.95563 0.86933 1.21639 0.95793 1.01568 0.96001 1.21484 1.02160 0.95515 0.96780 1.21203 0.96999 0.96107 1.00901 1.20255 0.98959 1.00670 0.94042 0.92026 0.87915 0.91731 0.88129 0.89637 0.85541 0.85528 0.94948 0.95379 0.92349 0.90896 0.89996 0.90903 0.90924 0.91775 0.91339 0.91206 0.91255 0.89879 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.22 9.73 -39.26 -0.38 -4.60 16 3 C 0.46 5.86 5.52 36.01 0.20 6.06 16 4 O -0.50 -7.53 14.71 -18.75 -0.28 -7.81 16 5 C -0.03 -0.35 0.77 -158.08 -0.12 -0.47 16 6 C 0.12 1.42 5.81 -3.32 -0.02 1.40 16 7 N -1.02 -14.18 3.50 -111.91 -0.39 -14.57 16 8 S 2.60 46.61 5.67 -107.50 -0.61 46.00 16 9 O -0.96 -19.83 17.40 -57.54 -1.00 -20.83 16 10 O -0.96 -19.28 17.25 -57.54 -0.99 -20.27 16 11 C -0.58 -10.70 6.12 37.16 0.23 -10.47 16 12 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 13 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 14 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 17 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 21 C 0.12 1.41 6.55 -2.76 -0.02 1.39 16 22 C -0.09 -0.85 2.50 -90.24 -0.23 -1.07 16 23 H 0.11 1.24 6.45 -51.93 -0.34 0.90 16 24 C -0.11 -0.81 4.90 -26.87 -0.13 -0.95 16 25 C -0.12 -0.75 5.94 -26.92 -0.16 -0.91 16 26 C -0.11 -0.67 5.94 -27.56 -0.16 -0.84 16 27 C -0.10 -0.75 4.71 -29.48 -0.14 -0.89 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 31 H 0.10 1.24 6.83 -51.93 -0.35 0.88 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 34 H 0.13 2.12 8.14 -51.92 -0.42 1.70 16 35 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 36 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 0.71 7.38 -51.92 -0.38 0.33 16 39 H 0.08 1.09 7.82 -51.93 -0.41 0.68 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.52 7.80 -51.93 -0.41 0.11 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.08 0.54 7.87 -51.93 -0.41 0.14 16 47 H 0.07 0.49 7.48 -51.93 -0.39 0.10 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -36.12 381.16 -9.52 -45.63 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.68 Total: -1.47 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -0.03 Total: -18.47 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.38 Total: -40.78 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -2.65 Total: -53.52 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: 46.61 SS G_CDS: -0.61 Total: 46.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.12 -9.52 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375146689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.453 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds