Wall clock time and date at job start Wed Apr 1 2020 03:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99687 * 2 1 4 4 O 1.20826 * 120.00121 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00008 * 179.97438 * 3 2 1 6 6 C 1.53239 * 105.53686 * 298.55128 * 5 3 2 7 7 N 1.47600 * 104.56954 * 278.79048 * 6 5 3 8 8 S 1.65603 * 126.05647 * 150.13883 * 7 6 5 9 9 O 1.42105 * 104.27307 * 206.07301 * 8 7 6 10 10 O 1.42095 * 104.27924 * 333.92695 * 8 7 6 11 11 C 1.81400 * 104.44931 * 90.00427 * 8 7 6 12 12 C 1.53000 * 109.47243 * 179.97438 * 11 8 7 13 13 C 1.50697 * 109.46990 * 179.97438 * 12 11 8 14 14 H 1.07995 * 120.00374 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99812 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00142 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99804 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47129 * 90.00390 * 17 15 13 19 19 H 1.48503 * 109.47003 * 210.00249 * 17 15 13 20 20 H 1.48497 * 109.47457 * 330.00166 * 17 15 13 21 21 C 1.47097 * 107.79700 * 330.27926 * 7 6 5 22 22 C 1.51976 * 105.81094 * 186.79235 * 5 3 2 23 23 H 1.08999 * 110.59320 * 332.65487 * 22 5 3 24 24 C 1.52903 * 112.27363 * 207.56443 * 22 5 3 25 25 C 1.52818 * 109.95767 * 50.96282 * 24 22 5 26 26 C 1.52816 * 108.21698 * 294.04682 * 25 24 22 27 27 C 1.48875 * 105.46706 * 60.00926 * 5 3 2 28 28 H 1.08997 * 109.47495 * 60.00222 * 1 2 3 29 29 H 1.09006 * 109.46649 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47283 * 299.99546 * 1 2 3 31 31 H 1.09002 * 110.43930 * 37.60125 * 6 5 3 32 32 H 1.08998 * 110.43467 * 159.98570 * 6 5 3 33 33 H 1.09004 * 109.46852 * 299.99545 * 11 8 7 34 34 H 1.08998 * 109.47069 * 59.99599 * 11 8 7 35 35 H 1.09000 * 109.46657 * 299.99917 * 12 11 8 36 36 H 1.08997 * 109.47170 * 59.99412 * 12 11 8 37 37 H 0.97000 * 119.99740 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.71769 * 257.96451 * 21 7 6 39 39 H 1.08995 * 109.95638 * 137.08581 * 21 7 6 40 40 H 1.08994 * 109.38660 * 171.10830 * 24 22 5 41 41 H 1.08998 * 109.38953 * 290.81293 * 24 22 5 42 42 H 1.09004 * 109.71056 * 53.72311 * 25 24 22 43 43 H 1.08997 * 109.71505 * 174.36404 * 25 24 22 44 44 H 1.08995 * 109.32544 * 182.07026 * 26 25 24 45 45 H 1.09009 * 109.32071 * 301.70451 * 26 25 24 46 46 H 1.08998 * 108.18577 * 271.60213 * 27 5 3 47 47 H 1.08998 * 108.18672 * 28.23604 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0127 0.5921 1.2977 7 7 3.8470 1.6262 2.3378 8 16 3.4961 1.3563 3.9336 9 8 2.8494 2.5488 4.3567 10 8 2.8114 0.1112 3.9361 11 6 5.1167 1.1933 4.7321 12 6 4.9247 0.9387 6.2285 13 6 6.2711 0.8026 6.8916 14 1 7.1734 0.8887 6.3046 15 6 6.3509 0.5672 8.2479 16 7 7.5258 0.4490 8.8268 17 14 4.7901 0.4177 9.2632 18 1 4.3538 -1.0014 9.2943 19 1 5.0537 0.8849 10.6480 20 1 3.7219 1.2507 8.6548 21 6 4.0457 2.9382 1.7030 22 6 3.9037 2.7467 0.1734 23 1 3.1024 3.3724 -0.2197 24 6 5.2515 3.1095 -0.4508 25 6 5.3118 2.6045 -1.8919 26 6 5.2902 1.0768 -1.8640 27 6 4.0009 0.5793 -1.2418 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.3791 -0.2685 1.5123 32 1 5.0567 0.2869 1.2274 33 1 5.6584 0.3582 4.2876 34 1 5.6857 2.1121 4.5902 35 1 4.3833 1.7740 6.6725 36 1 4.3555 0.0201 6.3706 37 1 7.5819 0.2838 9.7809 38 1 5.0421 3.3131 1.9376 39 1 3.2930 3.6416 2.0590 40 1 5.3749 4.1924 -0.4414 41 1 6.0534 2.6503 0.1274 42 1 4.4500 2.9744 -2.4474 43 1 6.2309 2.9507 -2.3646 44 1 5.3697 0.6963 -2.8823 45 1 6.1343 0.7147 -1.2769 46 1 4.1193 -0.4802 -1.0148 47 1 3.2064 0.6765 -1.9817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375146689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:59 Heat of formation + Delta-G solvation = -187.984950 kcal Electronic energy + Delta-G solvation = -30268.679769 eV Core-core repulsion = 26156.310934 eV Total energy + Delta-G solvation = -4112.368835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68918 -40.10015 -38.30959 -37.56350 -37.15802 -36.58321 -35.91920 -33.51701 -33.49118 -31.74881 -28.77672 -28.34081 -27.91570 -25.17743 -24.49138 -23.15659 -22.86518 -21.85262 -20.11699 -19.65920 -19.42694 -18.79017 -18.44390 -18.03143 -17.55222 -17.12515 -17.09494 -16.42138 -15.94128 -15.61535 -15.35512 -15.20431 -15.01181 -14.98023 -14.83071 -14.37356 -14.23294 -13.98619 -13.83642 -13.72252 -13.36303 -13.28335 -13.18048 -13.10373 -13.05540 -13.00212 -12.86917 -12.67531 -12.28721 -12.18650 -12.07826 -11.96135 -11.85324 -11.72547 -11.59569 -11.34236 -11.24593 -11.06469 -11.00702 -10.85321 -10.05438 -8.37512 -6.43074 -0.88782 1.07542 1.30431 1.32863 1.42413 1.57194 1.61864 2.28290 2.72154 2.89658 2.96387 3.18286 3.27670 3.52753 3.84539 3.90156 3.97931 4.02260 4.15668 4.19100 4.22267 4.23719 4.28947 4.43723 4.48334 4.52641 4.52983 4.58885 4.62930 4.72983 4.79743 4.88732 4.96232 5.01298 5.05390 5.08030 5.11055 5.23268 5.25234 5.28316 5.35857 5.41701 5.45223 5.50150 5.62209 6.15650 6.58589 6.62778 7.21312 8.77825 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003359 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.073943 B = 8334.199518 C = 9224.994904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.451 3.549 4 O -0.533 6.533 5 C -0.025 4.025 6 C 0.114 3.886 7 N -1.019 6.019 8 S 2.623 3.377 9 O -0.990 6.990 10 O -0.984 6.984 11 C -0.577 4.577 12 C -0.018 4.018 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.017 3.983 16 N -0.937 5.937 17 Si 0.921 3.079 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.253 1.253 21 C 0.109 3.891 22 C -0.080 4.080 23 H 0.098 0.902 24 C -0.109 4.109 25 C -0.120 4.120 26 C -0.111 4.111 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.029 0.971 36 H 0.031 0.969 37 H 0.270 0.730 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 0.700 -27.157 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.295 3.705 4 O -0.423 6.423 5 C -0.028 4.028 6 C -0.010 4.010 7 N -0.857 5.857 8 S 2.722 3.278 9 O -0.981 6.981 10 O -0.974 6.974 11 C -0.710 4.710 12 C -0.057 4.057 13 C -0.565 4.565 14 H 0.072 0.928 15 C -0.182 4.182 16 N -0.577 5.577 17 Si 0.744 3.256 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.177 1.177 21 C -0.016 4.016 22 C -0.100 4.100 23 H 0.116 0.884 24 C -0.146 4.146 25 C -0.158 4.158 26 C -0.149 4.149 27 C -0.138 4.138 28 H 0.089 0.911 29 H 0.151 0.849 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.571 0.887 -26.527 27.601 hybrid contribution -0.419 0.088 1.158 1.235 sum -7.990 0.975 -25.369 26.616 Atomic orbital electron populations 1.23536 0.75262 1.05767 1.02123 1.86493 1.24627 1.32805 1.83582 1.24764 0.93726 0.81257 0.70712 1.90611 1.67823 1.37181 1.46654 1.20352 0.85468 0.98556 0.98389 1.22263 1.04766 0.90445 0.83571 1.58572 1.88461 1.14685 1.23977 1.04462 0.77792 0.72912 0.72604 1.93506 1.73914 1.49188 1.81444 1.93504 1.72205 1.45889 1.85809 1.30263 1.20883 1.12780 1.07053 1.19391 0.98296 0.97556 0.90480 1.21132 0.92023 1.49630 0.93680 0.92809 1.25816 0.99124 0.94130 0.99145 1.69994 1.25523 1.50257 1.11916 0.86085 0.80607 0.80134 0.78788 1.18400 1.19790 1.17727 1.22373 1.02810 0.83430 0.92980 1.21827 1.01158 0.92963 0.94025 0.88386 1.21652 0.93985 1.02286 0.96720 1.21490 1.02692 0.95779 0.95832 1.21222 0.96114 0.95801 1.01741 1.20301 0.99858 1.01045 0.92566 0.91067 0.84931 0.93514 0.89126 0.86103 0.83491 0.83886 0.95265 0.95089 0.92062 0.88331 0.92136 0.90127 0.90037 0.92344 0.89833 0.89737 0.90335 0.88691 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -8.32 9.73 -51.42 -0.50 -8.82 16 3 C 0.45 11.29 5.52 71.24 0.39 11.68 16 4 O -0.53 -16.28 14.71 21.96 0.32 -15.95 16 5 C -0.02 -0.46 0.77 -54.49 -0.04 -0.50 16 6 C 0.11 2.36 5.81 86.25 0.50 2.86 16 7 N -1.02 -26.99 3.50 -507.98 -1.78 -28.77 16 8 S 2.62 92.15 5.67 -56.49 -0.32 91.83 16 9 O -0.99 -41.05 17.40 -127.65 -2.22 -43.27 16 10 O -0.98 -38.98 17.25 -127.65 -2.20 -41.18 16 11 C -0.58 -20.58 6.12 71.98 0.44 -20.14 16 12 C -0.02 -0.85 4.05 29.85 0.12 -0.73 16 13 C -0.53 -29.44 9.66 25.60 0.25 -29.19 16 14 H 0.05 3.18 7.99 -2.91 -0.02 3.16 16 15 C 0.02 0.97 5.47 84.66 0.46 1.43 16 16 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 17 Si 0.92 43.88 27.47 68.60 1.88 45.76 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.25 -11.62 6.54 99.48 0.65 -10.97 16 21 C 0.11 2.47 6.55 86.88 0.57 3.04 16 22 C -0.08 -1.46 2.50 -10.54 -0.03 -1.49 16 23 H 0.10 2.13 6.45 -2.39 -0.02 2.11 16 24 C -0.11 -1.27 4.90 30.50 0.15 -1.12 16 25 C -0.12 -1.09 5.94 30.47 0.18 -0.91 16 26 C -0.11 -0.90 5.94 30.06 0.18 -0.73 16 27 C -0.10 -1.21 4.71 28.81 0.14 -1.07 16 28 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 29 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 31 H 0.09 2.09 6.83 -2.39 -0.02 2.08 16 32 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.15 4.58 8.14 -2.39 -0.02 4.56 16 34 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 35 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 36 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.10 1.71 7.38 -2.38 -0.02 1.69 16 39 H 0.06 1.62 7.82 -2.39 -0.02 1.60 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.84 7.80 -2.39 -0.02 0.83 16 42 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.09 0.95 7.87 -2.39 -0.02 0.93 16 47 H 0.06 0.82 7.48 -2.39 -0.02 0.81 16 Total: -1.00 -79.20 381.16 0.89 -78.30 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.90 Total: 14.12 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.51 Total: -35.19 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.48 Total: -85.61 kcal Atomic # 8 Polarization: -104.62 SS G_CDS: -4.60 Total: -109.22 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 16 Polarization: 92.15 SS G_CDS: -0.32 Total: 91.83 kcal Total: -79.20 0.89 -78.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375146689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.680 kcal (2) G-P(sol) polarization free energy of solvation -79.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds