Wall clock time and date at job start Wed Apr 1 2020 03:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99551 * 2 1 4 4 O 1.20824 * 120.00698 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00142 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.01158 * 330.46209 * 5 3 2 7 7 C 1.54262 * 110.07788 * 209.04387 * 5 3 2 8 8 C 1.54889 * 104.19414 * 217.08286 * 7 5 3 9 9 C 1.54886 * 102.75170 * 37.93897 * 8 7 5 10 10 C 1.53871 * 110.03378 * 91.84485 * 5 3 2 11 11 H 1.09001 * 110.03606 * 238.67396 * 10 5 3 12 12 S 1.81397 * 110.03326 * 0.05551 * 10 5 3 13 13 O 1.42098 * 110.54291 * 68.73323 * 12 10 5 14 14 O 1.42106 * 110.54384 * 291.98823 * 12 10 5 15 15 N 1.65601 * 104.45292 * 180.36053 * 12 10 5 16 16 C 1.46503 * 119.99884 * 89.99901 * 15 12 10 17 17 C 1.50700 * 109.46989 * 265.00002 * 16 15 12 18 18 H 1.08006 * 120.00196 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99894 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99869 * 179.72587 * 19 17 16 22 22 H 1.48499 * 109.47084 * 180.27943 * 21 19 17 23 23 H 1.48506 * 109.47137 * 300.27799 * 21 19 17 24 24 H 1.48495 * 109.47417 * 60.27958 * 21 19 17 25 25 C 1.46495 * 119.99938 * 269.99688 * 15 12 10 26 26 C 1.52999 * 109.47404 * 264.99881 * 25 15 12 27 27 C 1.52994 * 117.49709 * 243.62105 * 26 25 15 28 28 C 1.52993 * 60.00239 * 252.51092 * 27 26 25 29 29 H 1.08998 * 109.46541 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47115 * 300.00274 * 1 2 3 31 31 H 1.09004 * 109.46769 * 60.00530 * 1 2 3 32 32 H 1.08999 * 110.48416 * 335.75680 * 7 5 3 33 33 H 1.08990 * 110.48959 * 98.40273 * 7 5 3 34 34 H 1.09007 * 110.75696 * 156.25555 * 8 7 5 35 35 H 1.09002 * 110.75320 * 279.43565 * 8 7 5 36 36 H 1.09002 * 110.48487 * 203.38217 * 9 8 7 37 37 H 1.08999 * 110.48947 * 80.74003 * 9 8 7 38 38 H 1.09002 * 109.46941 * 145.00536 * 16 15 12 39 39 H 1.08999 * 109.47439 * 25.00110 * 16 15 12 40 40 H 0.97000 * 120.00238 * 359.71745 * 20 19 17 41 41 H 1.08999 * 109.47065 * 25.00292 * 25 15 12 42 42 H 1.09004 * 109.47130 * 144.99882 * 25 15 12 43 43 H 1.08997 * 115.54783 * 29.33223 * 26 25 15 44 44 H 1.08999 * 117.50474 * 0.02562 * 27 26 25 45 45 H 1.09010 * 117.49775 * 145.02152 * 27 26 25 46 46 H 1.09004 * 117.50431 * 252.51313 * 28 27 26 47 47 H 1.08999 * 117.52015 * 107.48185 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9853 0.4048 0.5059 7 6 4.0284 2.5679 0.7039 8 6 5.2620 3.0249 -0.1137 9 6 4.8534 2.6841 -1.5683 10 6 4.0908 1.3489 -1.4441 11 1 4.7637 0.5141 -1.6402 12 16 2.7029 1.3150 -2.6116 13 8 1.9478 2.5155 -2.5234 14 8 2.0652 0.0453 -2.5914 15 7 3.4164 1.3900 -4.1041 16 6 3.7923 0.1564 -4.7992 17 6 5.2400 -0.1561 -4.5205 18 1 5.8218 0.4985 -3.8884 19 6 5.8214 -1.2783 -5.0715 20 7 5.1129 -2.0757 -5.8406 21 14 7.6179 -1.6615 -4.7322 22 1 8.0002 -2.9094 -5.4406 23 1 8.4630 -0.5397 -5.2146 24 1 7.8188 -1.8401 -3.2718 25 6 3.6717 2.6900 -4.7294 26 6 2.5156 3.0402 -5.6683 27 6 2.8306 3.1668 -7.1601 28 6 2.5369 4.4189 -6.3315 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.2442 3.3240 0.6660 33 1 4.3104 2.3608 1.7361 34 1 5.4258 4.0965 0.0005 35 1 6.1500 2.4663 0.1821 36 1 5.7374 2.5618 -2.1942 37 1 4.2024 3.4590 -1.9733 38 1 3.6485 0.2855 -5.8719 39 1 3.1687 -0.6646 -4.4452 40 1 4.1800 -1.8766 -6.0170 41 1 3.7568 3.4543 -3.9570 42 1 4.6004 2.6434 -5.2983 43 1 1.5445 2.6297 -5.3916 44 1 3.8614 3.0001 -7.4728 45 1 2.0666 2.8393 -7.8654 46 1 1.5797 4.9153 -6.4914 47 1 3.3743 5.0765 -6.0985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428301886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:07 Heat of formation + Delta-G solvation = -130.102892 kcal Electronic energy + Delta-G solvation = -31320.910543 eV Core-core repulsion = 27211.051662 eV Total energy + Delta-G solvation = -4109.858881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84904 -37.99753 -37.59949 -36.56293 -36.25540 -35.41008 -34.95898 -32.60131 -30.15110 -29.13793 -27.65054 -27.35366 -25.14861 -22.88631 -22.44729 -22.07949 -21.10847 -20.40758 -20.20831 -18.55263 -17.96358 -17.28027 -17.02235 -16.84257 -16.03949 -15.92366 -15.49897 -15.39771 -14.88419 -14.42429 -14.07264 -13.84411 -13.58648 -13.52644 -13.33300 -12.83058 -12.66672 -12.55858 -12.07801 -11.98545 -11.85690 -11.67895 -11.54311 -11.50872 -11.40213 -11.29535 -11.18530 -11.13666 -11.07996 -10.79579 -10.71103 -10.68091 -10.62741 -10.55668 -10.19607 -10.10061 -10.05358 -9.56252 -9.32964 -8.47749 -7.96073 -6.47918 -4.23386 0.74338 1.86605 2.60769 3.17845 3.35281 3.35802 3.55050 4.04094 4.10765 4.19169 4.37910 4.43381 4.61743 4.81069 4.95132 5.01531 5.11077 5.15819 5.16709 5.21197 5.23742 5.28211 5.29506 5.31559 5.46649 5.56903 5.59169 5.62806 5.73138 5.78933 5.84176 5.84871 5.99683 6.01731 6.08394 6.13882 6.19733 6.32655 6.34411 6.44170 6.58413 7.04507 7.20375 7.44138 7.59059 7.92081 8.30771 8.69377 9.49191 10.89521 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009088 B = 0.005658 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.199973 B = 4947.141397 C = 6033.460618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.334 6.334 3 C 0.400 3.600 4 O -0.462 6.462 5 C -0.058 4.058 6 H 0.121 0.879 7 C -0.116 4.116 8 C -0.113 4.113 9 C -0.100 4.100 10 C -0.596 4.596 11 H 0.159 0.841 12 S 2.592 3.408 13 O -0.950 6.950 14 O -0.944 6.944 15 N -0.973 5.973 16 C 0.234 3.766 17 C -0.626 4.626 18 H 0.056 0.944 19 C 0.024 3.976 20 N -0.903 5.903 21 Si 1.065 2.935 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.162 3.838 26 C -0.160 4.160 27 C -0.177 4.177 28 C -0.180 4.180 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.042 0.958 40 H 0.271 0.729 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 9.621 9.667 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.250 6.250 3 C 0.239 3.761 4 O -0.348 6.348 5 C -0.078 4.078 6 H 0.139 0.861 7 C -0.154 4.154 8 C -0.151 4.151 9 C -0.138 4.138 10 C -0.702 4.702 11 H 0.177 0.823 12 S 2.684 3.316 13 O -0.940 6.940 14 O -0.934 6.934 15 N -0.811 5.811 16 C 0.111 3.889 17 C -0.665 4.665 18 H 0.074 0.926 19 C -0.182 4.182 20 N -0.538 5.538 21 Si 0.892 3.108 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.213 1.213 25 C 0.036 3.964 26 C -0.180 4.180 27 C -0.214 4.214 28 C -0.217 4.217 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.948 8.733 9.488 13.041 hybrid contribution -0.731 0.908 0.387 1.228 sum -2.679 9.640 9.875 14.058 Atomic orbital electron populations 1.23352 0.75951 1.04244 1.02409 1.86626 1.23831 1.31762 1.82763 1.24397 0.92990 0.82688 0.75986 1.90771 1.66605 1.35728 1.41708 1.21382 0.86548 1.03679 0.96237 0.86115 1.22515 0.99167 0.94850 0.98870 1.22427 0.97362 1.01522 0.93789 1.22155 1.00528 0.92257 0.98857 1.31296 1.21578 1.08729 1.08623 0.82287 1.05563 0.76329 0.74537 0.75134 1.93616 1.66605 1.47708 1.86103 1.93605 1.72007 1.42196 1.85605 1.57233 1.78610 1.12625 1.32592 1.19297 0.96211 0.80169 0.93227 1.22363 0.96359 1.12306 1.35496 0.92586 1.25764 1.06058 0.92703 0.93634 1.70774 1.10395 1.38223 1.34363 0.83604 0.74343 0.76533 0.76273 1.20573 1.21334 1.21302 1.20686 0.96589 0.83498 0.95650 1.22786 1.01000 0.99669 0.94542 1.23016 1.02677 1.01683 0.94060 1.22898 1.02786 0.90924 1.05128 0.87582 0.91929 0.91502 0.88959 0.90176 0.90370 0.90554 0.89003 0.90300 0.95002 0.93977 0.91809 0.91078 0.89829 0.88044 0.88498 0.89258 0.89132 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.33 -5.78 9.24 -45.53 -0.42 -6.20 16 3 C 0.40 6.98 4.61 36.01 0.17 7.14 16 4 O -0.46 -8.78 13.83 -25.51 -0.35 -9.13 16 5 C -0.06 -0.85 3.40 -90.66 -0.31 -1.16 16 6 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 7 C -0.12 -1.39 6.31 -25.07 -0.16 -1.55 16 8 C -0.11 -1.24 6.91 -24.74 -0.17 -1.41 16 9 C -0.10 -1.39 6.01 -25.07 -0.15 -1.54 16 10 C -0.60 -9.94 3.63 -25.61 -0.09 -10.03 16 11 H 0.16 2.68 8.14 -51.93 -0.42 2.26 16 12 S 2.59 53.42 3.28 -107.50 -0.35 53.06 16 13 O -0.95 -20.36 14.52 -65.72 -0.95 -21.32 16 14 O -0.94 -22.18 14.76 -65.16 -0.96 -23.14 16 15 N -0.97 -20.32 2.67 -115.66 -0.31 -20.63 16 16 C 0.23 5.73 4.72 -5.19 -0.02 5.71 16 17 C -0.63 -16.09 9.38 -34.44 -0.32 -16.42 16 18 H 0.06 1.36 7.81 -52.48 -0.41 0.95 16 19 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 20 N -0.90 -26.18 13.65 55.43 0.76 -25.42 16 21 Si 1.06 23.61 29.90 -169.99 -5.08 18.52 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 24 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.16 2.90 5.45 -4.04 -0.02 2.88 16 26 C -0.16 -2.71 6.01 -90.62 -0.54 -3.26 16 27 C -0.18 -2.64 10.18 -26.74 -0.27 -2.91 16 28 C -0.18 -2.45 10.25 -26.74 -0.27 -2.72 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.09 1.22 6.87 -51.93 -0.36 0.86 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.12 6.04 -51.93 -0.31 0.81 16 38 H 0.03 0.81 7.98 -51.93 -0.41 0.39 16 39 H 0.04 1.13 6.68 -51.93 -0.35 0.79 16 40 H 0.27 7.88 7.22 -40.82 -0.29 7.59 16 41 H 0.07 1.14 6.05 -51.93 -0.31 0.82 16 42 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16 43 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.10 1.43 8.03 -51.93 -0.42 1.02 16 45 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -33.45 386.42 -10.63 -44.08 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.57 Total: 7.52 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -1.21 Total: -23.18 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.45 Total: -46.05 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -2.69 Total: -59.78 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.08 Total: 18.52 kcal Atomic # 16 Polarization: 53.42 SS G_CDS: -0.35 Total: 53.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.45 -10.63 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428301886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.023 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds