Wall clock time and date at job start Wed Apr 1 2020 03:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99551 * 2 1 4 4 O 1.20824 * 120.00698 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00142 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.01158 * 330.46209 * 5 3 2 7 7 C 1.54262 * 110.07788 * 209.04387 * 5 3 2 8 8 C 1.54889 * 104.19414 * 217.08286 * 7 5 3 9 9 C 1.54886 * 102.75170 * 37.93897 * 8 7 5 10 10 C 1.53871 * 110.03378 * 91.84485 * 5 3 2 11 11 H 1.09001 * 110.03606 * 238.67396 * 10 5 3 12 12 S 1.81397 * 110.03326 * 0.05551 * 10 5 3 13 13 O 1.42098 * 110.54291 * 68.73323 * 12 10 5 14 14 O 1.42106 * 110.54384 * 291.98823 * 12 10 5 15 15 N 1.65601 * 104.45292 * 180.36053 * 12 10 5 16 16 C 1.46503 * 119.99884 * 89.99901 * 15 12 10 17 17 C 1.50700 * 109.46989 * 265.00002 * 16 15 12 18 18 H 1.08006 * 120.00196 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99894 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99869 * 179.72587 * 19 17 16 22 22 H 1.48499 * 109.47084 * 180.27943 * 21 19 17 23 23 H 1.48506 * 109.47137 * 300.27799 * 21 19 17 24 24 H 1.48495 * 109.47417 * 60.27958 * 21 19 17 25 25 C 1.46495 * 119.99938 * 269.99688 * 15 12 10 26 26 C 1.52999 * 109.47404 * 264.99881 * 25 15 12 27 27 C 1.52994 * 117.49709 * 243.62105 * 26 25 15 28 28 C 1.52993 * 60.00239 * 252.51092 * 27 26 25 29 29 H 1.08998 * 109.46541 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47115 * 300.00274 * 1 2 3 31 31 H 1.09004 * 109.46769 * 60.00530 * 1 2 3 32 32 H 1.08999 * 110.48416 * 335.75680 * 7 5 3 33 33 H 1.08990 * 110.48959 * 98.40273 * 7 5 3 34 34 H 1.09007 * 110.75696 * 156.25555 * 8 7 5 35 35 H 1.09002 * 110.75320 * 279.43565 * 8 7 5 36 36 H 1.09002 * 110.48487 * 203.38217 * 9 8 7 37 37 H 1.08999 * 110.48947 * 80.74003 * 9 8 7 38 38 H 1.09002 * 109.46941 * 145.00536 * 16 15 12 39 39 H 1.08999 * 109.47439 * 25.00110 * 16 15 12 40 40 H 0.97000 * 120.00238 * 359.71745 * 20 19 17 41 41 H 1.08999 * 109.47065 * 25.00292 * 25 15 12 42 42 H 1.09004 * 109.47130 * 144.99882 * 25 15 12 43 43 H 1.08997 * 115.54783 * 29.33223 * 26 25 15 44 44 H 1.08999 * 117.50474 * 0.02562 * 27 26 25 45 45 H 1.09010 * 117.49775 * 145.02152 * 27 26 25 46 46 H 1.09004 * 117.50431 * 252.51313 * 28 27 26 47 47 H 1.08999 * 117.52015 * 107.48185 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9853 0.4048 0.5059 7 6 4.0284 2.5679 0.7039 8 6 5.2620 3.0249 -0.1137 9 6 4.8534 2.6841 -1.5683 10 6 4.0908 1.3489 -1.4441 11 1 4.7637 0.5141 -1.6402 12 16 2.7029 1.3150 -2.6116 13 8 1.9478 2.5155 -2.5234 14 8 2.0652 0.0453 -2.5914 15 7 3.4164 1.3900 -4.1041 16 6 3.7923 0.1564 -4.7992 17 6 5.2400 -0.1561 -4.5205 18 1 5.8218 0.4985 -3.8884 19 6 5.8214 -1.2783 -5.0715 20 7 5.1129 -2.0757 -5.8406 21 14 7.6179 -1.6615 -4.7322 22 1 8.0002 -2.9094 -5.4406 23 1 8.4630 -0.5397 -5.2146 24 1 7.8188 -1.8401 -3.2718 25 6 3.6717 2.6900 -4.7294 26 6 2.5156 3.0402 -5.6683 27 6 2.8306 3.1668 -7.1601 28 6 2.5369 4.4189 -6.3315 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.2442 3.3240 0.6660 33 1 4.3104 2.3608 1.7361 34 1 5.4258 4.0965 0.0005 35 1 6.1500 2.4663 0.1821 36 1 5.7374 2.5618 -2.1942 37 1 4.2024 3.4590 -1.9733 38 1 3.6485 0.2855 -5.8719 39 1 3.1687 -0.6646 -4.4452 40 1 4.1800 -1.8766 -6.0170 41 1 3.7568 3.4543 -3.9570 42 1 4.6004 2.6434 -5.2983 43 1 1.5445 2.6297 -5.3916 44 1 3.8614 3.0001 -7.4728 45 1 2.0666 2.8393 -7.8654 46 1 1.5797 4.9153 -6.4914 47 1 3.3743 5.0765 -6.0985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428301886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:06 Heat of formation + Delta-G solvation = -150.143491 kcal Electronic energy + Delta-G solvation = -31321.779568 eV Core-core repulsion = 27211.051662 eV Total energy + Delta-G solvation = -4110.727906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14114 -39.21600 -38.92665 -38.22977 -37.58424 -37.08500 -36.62664 -34.52330 -31.25978 -30.25830 -29.40679 -28.50207 -26.88138 -24.59051 -23.88335 -23.25701 -22.18113 -21.76938 -21.43202 -20.02325 -19.48402 -18.95332 -18.53975 -18.34021 -17.53325 -17.39342 -16.78174 -16.71262 -16.25812 -15.77529 -15.60136 -15.34129 -15.07085 -14.75104 -14.60952 -14.51981 -14.14049 -13.91715 -13.61036 -13.30278 -13.26619 -13.18273 -13.11447 -12.96696 -12.82487 -12.73376 -12.50669 -12.35484 -12.31911 -12.29475 -12.09329 -11.98034 -11.92534 -11.89623 -11.62429 -11.54682 -11.39721 -11.07587 -10.83339 -10.52977 -9.72585 -8.61575 -6.38771 -0.83898 0.53331 1.36222 1.58128 1.65272 1.66202 1.83736 2.59966 2.67008 2.84306 2.92732 3.10037 3.19573 3.29476 3.46916 3.67648 3.86319 3.96234 4.02701 4.06304 4.09039 4.11542 4.14653 4.19833 4.20730 4.35409 4.39539 4.52116 4.61976 4.71259 4.75629 4.79749 4.84861 4.90834 4.96447 4.97836 4.99703 5.07097 5.12950 5.18733 5.22295 5.32042 5.36485 5.71160 5.86989 6.24646 6.28471 6.51466 7.44113 8.74366 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009088 B = 0.005658 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.199973 B = 4947.141397 C = 6033.460618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.349 6.349 3 C 0.391 3.609 4 O -0.486 6.486 5 C -0.064 4.064 6 H 0.150 0.850 7 C -0.114 4.114 8 C -0.103 4.103 9 C -0.107 4.107 10 C -0.576 4.576 11 H 0.161 0.839 12 S 2.578 3.422 13 O -0.967 6.967 14 O -0.988 6.988 15 N -0.980 5.980 16 C 0.249 3.751 17 C -0.622 4.622 18 H 0.074 0.926 19 C -0.029 4.029 20 N -0.935 5.935 21 Si 1.111 2.889 22 H -0.291 1.291 23 H -0.263 1.263 24 H -0.263 1.263 25 C 0.159 3.841 26 C -0.196 4.196 27 C -0.179 4.179 28 C -0.149 4.149 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.013 0.987 39 H 0.008 0.992 40 H 0.255 0.745 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 11.492 11.686 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.265 6.265 3 C 0.232 3.768 4 O -0.374 6.374 5 C -0.085 4.085 6 H 0.167 0.833 7 C -0.152 4.152 8 C -0.141 4.141 9 C -0.146 4.146 10 C -0.688 4.688 11 H 0.178 0.822 12 S 2.676 3.324 13 O -0.958 6.958 14 O -0.978 6.978 15 N -0.816 5.816 16 C 0.125 3.875 17 C -0.660 4.660 18 H 0.092 0.908 19 C -0.228 4.228 20 N -0.572 5.572 21 Si 0.931 3.069 22 H -0.217 1.217 23 H -0.188 1.188 24 H -0.187 1.187 25 C 0.033 3.967 26 C -0.216 4.216 27 C -0.216 4.216 28 C -0.187 4.187 29 H 0.152 0.848 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.031 0.969 39 H 0.026 0.974 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.124 0.876 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.833 10.640 11.473 15.669 hybrid contribution -1.734 0.351 -0.212 1.782 sum -0.901 10.991 11.261 15.761 Atomic orbital electron populations 1.23649 0.74778 1.06202 1.02417 1.86614 1.25298 1.32068 1.82510 1.25030 0.94232 0.82342 0.75225 1.90748 1.67421 1.36328 1.42860 1.21768 0.84688 1.06838 0.95225 0.83265 1.22615 0.99111 0.92680 1.00746 1.22492 0.97423 1.03487 0.90658 1.22359 1.00342 0.90142 1.01718 1.31073 1.18858 1.10838 1.08059 0.82164 1.05700 0.77445 0.73466 0.75748 1.93584 1.68089 1.47671 1.86425 1.93545 1.74162 1.43788 1.86324 1.57097 1.78732 1.12447 1.33309 1.18846 0.95539 0.80907 0.92255 1.22677 0.96553 1.12111 1.34696 0.90764 1.27312 1.09805 0.92776 0.92894 1.70906 1.09823 1.39671 1.36764 0.83044 0.69753 0.76609 0.77463 1.21714 1.18800 1.18750 1.20890 0.96948 0.82465 0.96355 1.22731 0.99621 1.03323 0.95932 1.23075 1.02894 1.02806 0.92798 1.23044 1.04341 0.89652 1.01650 0.84831 0.89558 0.93831 0.90531 0.86645 0.87940 0.88247 0.87890 0.90907 0.96914 0.97409 0.93593 0.89139 0.89602 0.90715 0.88395 0.88847 0.87649 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 10.56 113.37 1.20 1.84 16 2 O -0.35 -12.19 9.24 -45.36 -0.42 -12.60 16 3 C 0.39 13.53 4.61 71.24 0.33 13.85 16 4 O -0.49 -18.59 13.83 28.44 0.39 -18.19 16 5 C -0.06 -1.76 3.40 -10.82 -0.04 -1.80 16 6 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 7 C -0.11 -2.31 6.31 31.67 0.20 -2.11 16 8 C -0.10 -1.77 6.91 31.88 0.22 -1.55 16 9 C -0.11 -2.68 6.01 31.67 0.19 -2.48 16 10 C -0.58 -18.33 3.63 31.32 0.11 -18.22 16 11 H 0.16 5.11 8.14 -2.39 -0.02 5.09 16 12 S 2.58 109.10 3.28 -56.49 -0.19 108.92 16 13 O -0.97 -42.74 14.52 -119.83 -1.74 -44.48 16 14 O -0.99 -49.08 14.76 -120.36 -1.78 -50.86 16 15 N -0.98 -42.10 2.67 -519.85 -1.39 -43.49 16 16 C 0.25 12.77 4.72 85.63 0.40 13.17 16 17 C -0.62 -32.02 9.38 25.60 0.24 -31.78 16 18 H 0.07 3.48 7.81 -2.91 -0.02 3.45 16 19 C -0.03 -1.56 5.46 84.66 0.46 -1.10 16 20 N -0.93 -55.85 13.65 21.45 0.29 -55.56 16 21 Si 1.11 46.10 29.90 68.60 2.05 48.15 16 22 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 25 C 0.16 5.70 5.45 86.38 0.47 6.17 16 26 C -0.20 -6.79 6.01 -10.80 -0.06 -6.85 16 27 C -0.18 -5.30 10.18 30.59 0.31 -4.99 16 28 C -0.15 -3.84 10.25 30.59 0.31 -3.52 16 29 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.09 2.01 8.13 -2.39 -0.02 1.99 16 31 H 0.04 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.08 1.83 6.87 -2.39 -0.02 1.82 16 33 H 0.12 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 1.92 6.04 -2.39 -0.01 1.90 16 38 H 0.01 0.69 7.98 -2.39 -0.02 0.68 16 39 H 0.01 0.46 6.68 -2.39 -0.02 0.44 16 40 H 0.25 15.65 7.22 -92.71 -0.67 14.98 16 41 H 0.09 2.82 6.05 -2.39 -0.01 2.81 16 42 H 0.09 2.99 7.84 -2.38 -0.02 2.97 16 43 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 44 H 0.10 2.86 8.03 -2.39 -0.02 2.84 16 45 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 46 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -76.88 386.42 2.63 -74.25 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 1.06 Total: 33.22 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 4.35 Total: -39.37 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -1.10 Total: -99.05 kcal Atomic # 8 Polarization: -122.59 SS G_CDS: -3.54 Total: -126.13 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.05 Total: 48.15 kcal Atomic # 16 Polarization: 109.10 SS G_CDS: -0.19 Total: 108.92 kcal Total: -76.88 2.63 -74.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428301886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.892 kcal (2) G-P(sol) polarization free energy of solvation -76.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds