Wall clock time and date at job start Wed Apr 1 2020 03:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34223 * 117.00221 * 2 1 4 4 O 1.20825 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00280 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.50331 * 59.92168 * 5 3 2 7 7 C 1.53120 * 109.50245 * 299.80673 * 5 3 2 8 8 C 1.53114 * 109.16244 * 182.40383 * 7 5 3 9 9 C 1.53042 * 109.27899 * 57.65121 * 8 7 5 10 10 N 1.46843 * 109.52190 * 300.82617 * 9 8 7 11 11 C 1.46904 * 110.99783 * 185.83814 * 10 9 8 12 12 C 1.53003 * 109.47344 * 45.78895 * 11 10 9 13 13 C 1.52997 * 109.47188 * 179.97438 * 12 11 10 14 14 S 1.81004 * 109.46877 * 179.97438 * 13 12 11 15 15 C 1.76198 * 99.99915 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99731 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00176 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00151 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00193 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47110 * 60.00019 * 19 17 15 21 21 H 1.48502 * 109.47042 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46743 * 299.99914 * 19 17 15 23 23 C 1.46846 * 111.20155 * 61.74037 * 10 9 8 24 24 H 1.09001 * 109.46210 * 178.24264 * 23 10 9 25 25 C 1.50693 * 109.46229 * 58.27268 * 23 10 9 26 26 O 1.20829 * 120.00158 * 311.13845 * 25 23 10 27 27 O 1.34234 * 120.00071 * 131.13809 * 25 23 10 28 28 C 1.45196 * 117.00188 * 180.02562 * 27 25 23 29 29 H 1.09001 * 109.46729 * 60.00175 * 1 2 3 30 30 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46985 * 299.99630 * 1 2 3 32 32 H 1.09002 * 109.52436 * 302.30791 * 7 5 3 33 33 H 1.09004 * 109.52526 * 62.49590 * 7 5 3 34 34 H 1.08999 * 109.50915 * 177.59313 * 8 7 5 35 35 H 1.08998 * 109.50071 * 297.71727 * 8 7 5 36 36 H 1.08999 * 109.46054 * 180.80788 * 9 8 7 37 37 H 1.09004 * 109.45904 * 60.84004 * 9 8 7 38 38 H 1.08993 * 109.47306 * 285.78549 * 11 10 9 39 39 H 1.09002 * 109.47015 * 165.78433 * 11 10 9 40 40 H 1.09001 * 109.46999 * 59.99838 * 12 11 10 41 41 H 1.08999 * 109.46729 * 300.00511 * 12 11 10 42 42 H 1.09001 * 109.47183 * 60.00073 * 13 12 11 43 43 H 1.08994 * 109.47393 * 299.99797 * 13 12 11 44 44 H 0.96997 * 120.00659 * 179.97438 * 18 17 15 45 45 H 1.09006 * 109.47289 * 299.99947 * 28 27 25 46 46 H 1.09000 * 109.47497 * 59.99391 * 28 27 25 47 47 H 1.08998 * 109.47577 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9571 0.7794 -0.8882 7 6 4.1140 0.5853 1.2534 8 6 5.6388 0.7223 1.2766 9 6 6.0135 2.2057 1.2395 10 7 5.4674 2.8195 0.0224 11 6 5.9234 4.2090 -0.1166 12 6 7.4267 4.2824 0.1584 13 6 7.9017 5.7295 0.0130 14 16 9.6800 5.8164 0.3390 15 6 9.9491 7.5425 0.1095 16 1 9.1236 8.1875 -0.1529 17 6 11.2218 8.0734 0.2671 18 7 12.2278 7.2874 0.5875 19 14 11.5070 9.9036 0.0245 20 1 10.6778 10.6662 0.9920 21 1 12.9417 10.2148 0.2482 22 1 11.1283 10.2842 -1.3601 23 6 4.0011 2.7421 0.0006 24 1 3.6249 3.2323 -0.8974 25 6 3.4438 3.4309 1.2195 26 8 3.8893 3.1772 2.3136 27 8 2.4523 4.3265 1.0898 28 6 1.9650 4.9513 2.3065 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.6925 1.0557 2.1417 33 1 3.8433 -0.4704 1.2359 34 1 6.0310 0.2706 2.1877 35 1 6.0627 0.2181 0.4081 36 1 7.0989 2.3062 1.2414 37 1 5.6009 2.7064 2.1154 38 1 5.3923 4.8388 0.5971 39 1 5.7218 4.5580 -1.1294 40 1 7.9578 3.6526 -0.5554 41 1 7.6282 3.9333 1.1711 42 1 7.3706 6.3596 0.7265 43 1 7.7002 6.0781 -0.9998 44 1 13.1173 7.6583 0.6972 45 1 1.5811 4.1849 2.9799 46 1 2.7811 5.4861 2.7924 47 1 1.1672 5.6522 2.0607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441665745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:52 Heat of formation + Delta-G solvation = -163.452848 kcal Electronic energy + Delta-G solvation = -29309.223834 eV Core-core repulsion = 25197.918791 eV Total energy + Delta-G solvation = -4111.305043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85676 -40.43838 -38.69917 -36.88206 -36.30290 -35.11451 -32.43717 -32.12954 -31.71019 -28.51230 -27.82203 -26.44671 -25.52141 -24.95135 -23.74721 -21.94151 -21.77100 -20.40025 -19.95785 -18.02595 -17.79882 -17.45648 -17.18810 -16.92400 -16.47031 -16.19125 -15.68091 -15.15087 -14.83225 -14.79422 -14.51441 -14.17507 -14.04503 -13.95393 -13.62979 -13.25172 -13.05613 -12.92926 -12.71466 -12.56705 -12.47924 -12.11907 -11.99544 -11.75755 -11.53203 -11.35807 -11.18541 -11.13773 -11.03691 -10.83133 -10.81511 -10.72310 -10.65899 -10.61689 -10.47921 -10.11740 -9.55515 -9.04251 -8.42810 -8.30557 -6.52001 -6.21747 -3.92051 1.80759 1.97881 2.21613 2.60588 3.21761 3.24092 3.28477 3.47382 3.72313 4.06578 4.23269 4.32640 4.40975 4.63850 4.71873 4.79473 4.83714 4.92023 4.97948 5.04517 5.06226 5.12813 5.14035 5.15421 5.22266 5.26919 5.37965 5.39642 5.47313 5.62996 5.65023 5.74490 5.81182 5.82646 5.95401 5.97782 6.05026 6.11515 6.29380 6.47329 6.55424 6.64915 6.79428 6.83672 7.33492 7.61278 7.63654 8.37416 9.24415 10.86363 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.002294 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.846158 B =12200.551200 C =12870.870357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.457 3.543 4 O -0.489 6.489 5 C -0.066 4.066 6 H 0.136 0.864 7 C -0.120 4.120 8 C -0.106 4.106 9 C 0.007 3.993 10 N -0.502 5.502 11 C 0.054 3.946 12 C -0.099 4.099 13 C -0.113 4.113 14 S -0.130 6.130 15 C -0.517 4.517 16 H 0.072 0.928 17 C 0.071 3.929 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.109 3.891 24 H 0.119 0.881 25 C 0.439 3.561 26 O -0.501 6.501 27 O -0.339 6.339 28 C 0.035 3.965 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.268 0.732 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.712 -15.933 -0.205 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.299 3.701 4 O -0.375 6.375 5 C -0.085 4.085 6 H 0.154 0.846 7 C -0.158 4.158 8 C -0.144 4.144 9 C -0.120 4.120 10 N -0.226 5.226 11 C -0.075 4.075 12 C -0.137 4.137 13 C -0.262 4.262 14 S 0.099 5.901 15 C -0.665 4.665 16 H 0.090 0.910 17 C -0.138 4.138 18 N -0.505 5.505 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.002 4.002 24 H 0.137 0.863 25 C 0.280 3.720 26 O -0.390 6.390 27 O -0.253 6.253 28 C -0.059 4.059 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.714 -16.763 0.057 28.230 hybrid contribution -1.293 2.826 0.366 3.129 sum -24.007 -13.937 0.423 27.762 Atomic orbital electron populations 1.23291 0.76111 1.03783 1.02655 1.86494 1.23518 1.33058 1.84039 1.23702 0.91867 0.81765 0.72782 1.90784 1.66863 1.35759 1.44138 1.20992 0.87203 0.95868 1.04432 0.84597 1.21748 0.97551 1.00854 0.95599 1.21490 0.93820 0.96295 1.02811 1.22964 1.01539 0.94994 0.92457 1.62527 1.02588 1.18827 1.38702 1.22359 0.97010 0.86315 1.01795 1.21437 0.92645 0.96778 1.02882 1.23226 1.02615 0.97484 1.02920 1.84602 1.00084 1.13738 1.91718 1.22645 0.97104 0.91986 1.54747 0.91028 1.25010 0.95073 0.99052 0.94657 1.70007 1.00352 1.35349 1.44821 0.86227 0.77322 0.83109 0.78889 1.19976 1.20817 1.19917 1.21405 0.89694 0.93576 0.95564 0.86260 1.25062 0.77232 0.77676 0.92002 1.90519 1.57044 1.62334 1.29067 1.86639 1.48999 1.52463 1.37225 1.23208 0.99618 0.97379 0.85707 0.91693 0.87961 0.91950 0.90335 0.90113 0.90575 0.90806 0.88838 0.89637 0.94846 0.89753 0.90299 0.91035 0.92376 0.91933 0.92255 0.92383 0.92044 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.10 10.50 -39.24 -0.41 -3.51 16 3 C 0.46 4.69 6.97 36.01 0.25 4.94 16 4 O -0.49 -6.15 13.55 -25.50 -0.35 -6.49 16 5 C -0.07 -0.61 2.57 -91.69 -0.24 -0.85 16 6 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 7 C -0.12 -1.10 4.88 -26.61 -0.13 -1.23 16 8 C -0.11 -1.01 6.09 -26.65 -0.16 -1.17 16 9 C 0.01 0.08 4.53 -3.83 -0.02 0.07 16 10 N -0.50 -6.08 4.75 -228.08 -1.08 -7.16 16 11 C 0.05 0.74 5.15 -3.82 -0.02 0.72 16 12 C -0.10 -1.60 4.47 -26.73 -0.12 -1.72 16 13 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 14 S -0.13 -3.40 21.44 -107.50 -2.30 -5.70 16 15 C -0.52 -14.90 9.50 30.94 0.29 -14.61 16 16 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 17 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 18 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 19 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.11 1.24 2.05 -68.88 -0.14 1.10 16 24 H 0.12 1.30 8.10 -51.93 -0.42 0.88 16 25 C 0.44 5.87 4.05 36.00 0.15 6.01 16 26 O -0.50 -7.39 11.23 -18.75 -0.21 -7.60 16 27 O -0.34 -4.52 9.25 -46.02 -0.43 -4.94 16 28 C 0.04 0.37 10.56 101.05 1.07 1.44 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 32 H 0.08 0.88 6.08 -51.93 -0.32 0.57 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.19 5.81 -51.93 -0.30 0.89 16 37 H 0.09 1.22 4.89 -52.07 -0.25 0.96 16 38 H 0.03 0.49 7.00 -51.93 -0.36 0.13 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.18 6.21 -51.93 -0.32 0.86 16 42 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 43 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 46 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -33.90 385.53 -8.59 -42.49 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.44 Total: -0.02 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 2.11 Total: -4.17 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: -0.35 Total: -32.51 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.39 Total: -22.55 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.30 Total: -5.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.90 -8.59 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441665745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.965 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds