Wall clock time and date at job start Wed Apr 1 2020 03:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34223 * 117.00221 * 2 1 4 4 O 1.20825 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00280 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.50331 * 59.92168 * 5 3 2 7 7 C 1.53120 * 109.50245 * 299.80673 * 5 3 2 8 8 C 1.53114 * 109.16244 * 182.40383 * 7 5 3 9 9 C 1.53042 * 109.27899 * 57.65121 * 8 7 5 10 10 N 1.46843 * 109.52190 * 300.82617 * 9 8 7 11 11 C 1.46904 * 110.99783 * 185.83814 * 10 9 8 12 12 C 1.53003 * 109.47344 * 45.78895 * 11 10 9 13 13 C 1.52997 * 109.47188 * 179.97438 * 12 11 10 14 14 S 1.81004 * 109.46877 * 179.97438 * 13 12 11 15 15 C 1.76198 * 99.99915 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99731 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00176 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00151 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00193 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47110 * 60.00019 * 19 17 15 21 21 H 1.48502 * 109.47042 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46743 * 299.99914 * 19 17 15 23 23 C 1.46846 * 111.20155 * 61.74037 * 10 9 8 24 24 H 1.09001 * 109.46210 * 178.24264 * 23 10 9 25 25 C 1.50693 * 109.46229 * 58.27268 * 23 10 9 26 26 O 1.20829 * 120.00158 * 311.13845 * 25 23 10 27 27 O 1.34234 * 120.00071 * 131.13809 * 25 23 10 28 28 C 1.45196 * 117.00188 * 180.02562 * 27 25 23 29 29 H 1.09001 * 109.46729 * 60.00175 * 1 2 3 30 30 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46985 * 299.99630 * 1 2 3 32 32 H 1.09002 * 109.52436 * 302.30791 * 7 5 3 33 33 H 1.09004 * 109.52526 * 62.49590 * 7 5 3 34 34 H 1.08999 * 109.50915 * 177.59313 * 8 7 5 35 35 H 1.08998 * 109.50071 * 297.71727 * 8 7 5 36 36 H 1.08999 * 109.46054 * 180.80788 * 9 8 7 37 37 H 1.09004 * 109.45904 * 60.84004 * 9 8 7 38 38 H 1.08993 * 109.47306 * 285.78549 * 11 10 9 39 39 H 1.09002 * 109.47015 * 165.78433 * 11 10 9 40 40 H 1.09001 * 109.46999 * 59.99838 * 12 11 10 41 41 H 1.08999 * 109.46729 * 300.00511 * 12 11 10 42 42 H 1.09001 * 109.47183 * 60.00073 * 13 12 11 43 43 H 1.08994 * 109.47393 * 299.99797 * 13 12 11 44 44 H 0.96997 * 120.00659 * 179.97438 * 18 17 15 45 45 H 1.09006 * 109.47289 * 299.99947 * 28 27 25 46 46 H 1.09000 * 109.47497 * 59.99391 * 28 27 25 47 47 H 1.08998 * 109.47577 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9571 0.7794 -0.8882 7 6 4.1140 0.5853 1.2534 8 6 5.6388 0.7223 1.2766 9 6 6.0135 2.2057 1.2395 10 7 5.4674 2.8195 0.0224 11 6 5.9234 4.2090 -0.1166 12 6 7.4267 4.2824 0.1584 13 6 7.9017 5.7295 0.0130 14 16 9.6800 5.8164 0.3390 15 6 9.9491 7.5425 0.1095 16 1 9.1236 8.1875 -0.1529 17 6 11.2218 8.0734 0.2671 18 7 12.2278 7.2874 0.5875 19 14 11.5070 9.9036 0.0245 20 1 10.6778 10.6662 0.9920 21 1 12.9417 10.2148 0.2482 22 1 11.1283 10.2842 -1.3601 23 6 4.0011 2.7421 0.0006 24 1 3.6249 3.2323 -0.8974 25 6 3.4438 3.4309 1.2195 26 8 3.8893 3.1772 2.3136 27 8 2.4523 4.3265 1.0898 28 6 1.9650 4.9513 2.3065 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.6925 1.0557 2.1417 33 1 3.8433 -0.4704 1.2359 34 1 6.0310 0.2706 2.1877 35 1 6.0627 0.2181 0.4081 36 1 7.0989 2.3062 1.2414 37 1 5.6009 2.7064 2.1154 38 1 5.3923 4.8388 0.5971 39 1 5.7218 4.5580 -1.1294 40 1 7.9578 3.6526 -0.5554 41 1 7.6282 3.9333 1.1711 42 1 7.3706 6.3596 0.7265 43 1 7.7002 6.0781 -0.9998 44 1 13.1173 7.6583 0.6972 45 1 1.5811 4.1849 2.9799 46 1 2.7811 5.4861 2.7924 47 1 1.1672 5.6522 2.0607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441665745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:52 Heat of formation + Delta-G solvation = -184.332257 kcal Electronic energy + Delta-G solvation = -29310.129233 eV Core-core repulsion = 25197.918791 eV Total energy + Delta-G solvation = -4112.210442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.76255 -41.25682 -39.65787 -37.63256 -37.35246 -36.15064 -34.61046 -33.23275 -32.67662 -29.29671 -28.53520 -27.95774 -27.30653 -25.78553 -24.89453 -22.90524 -22.68225 -21.48495 -20.88784 -19.56027 -18.81808 -18.75566 -18.00122 -17.78647 -17.27715 -17.12723 -16.89826 -16.68741 -16.42647 -16.03873 -15.68175 -15.23547 -15.05755 -14.83761 -14.65870 -14.48725 -14.08140 -14.00619 -13.74048 -13.62390 -13.45789 -13.19857 -13.06628 -13.03000 -12.92137 -12.75907 -12.59216 -12.41640 -12.30706 -12.13499 -11.81930 -11.79067 -11.68326 -11.57525 -11.44969 -11.36219 -11.16573 -11.11454 -10.33437 -9.45924 -8.66711 -8.37590 -6.13714 0.98204 1.04896 1.30307 1.40198 1.46305 1.52031 1.69841 1.74413 2.27436 2.66234 2.96410 3.26203 3.31029 3.53691 3.63524 3.79793 3.91829 3.95454 4.06107 4.13741 4.18088 4.20389 4.26003 4.28701 4.30408 4.33209 4.36680 4.45539 4.56764 4.62241 4.69203 4.71907 4.73452 4.84614 4.87836 5.07557 5.09551 5.14235 5.22048 5.28183 5.29562 5.39058 5.54224 5.69559 5.83125 6.17477 6.60432 6.64311 7.04446 8.71471 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.002294 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.846158 B =12200.551200 C =12870.870357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.517 6.517 5 C -0.062 4.062 6 H 0.164 0.836 7 C -0.114 4.114 8 C -0.101 4.101 9 C 0.005 3.995 10 N -0.492 5.492 11 C 0.062 3.938 12 C -0.085 4.085 13 C -0.089 4.089 14 S -0.190 6.190 15 C -0.540 4.540 16 H 0.072 0.928 17 C 0.015 3.985 18 N -0.906 5.906 19 Si 0.993 3.007 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.264 1.264 23 C 0.107 3.893 24 H 0.126 0.874 25 C 0.434 3.566 26 O -0.520 6.520 27 O -0.351 6.351 28 C 0.030 3.970 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.021 0.979 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.272 0.728 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.979 -16.528 -1.239 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.303 3.697 4 O -0.406 6.406 5 C -0.081 4.081 6 H 0.181 0.819 7 C -0.151 4.151 8 C -0.138 4.138 9 C -0.122 4.122 10 N -0.216 5.216 11 C -0.067 4.067 12 C -0.124 4.124 13 C -0.239 4.239 14 S 0.039 5.961 15 C -0.688 4.688 16 H 0.090 0.910 17 C -0.190 4.190 18 N -0.542 5.542 19 Si 0.815 3.185 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.188 1.188 23 C -0.003 4.003 24 H 0.144 0.856 25 C 0.277 3.723 26 O -0.410 6.410 27 O -0.266 6.266 28 C -0.063 4.063 29 H 0.084 0.916 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.997 -17.382 -0.978 29.647 hybrid contribution -1.016 2.945 0.728 3.199 sum -25.013 -14.437 -0.249 28.881 Atomic orbital electron populations 1.23563 0.74639 1.05794 1.02452 1.86482 1.24949 1.32071 1.83533 1.23807 0.92106 0.81798 0.72012 1.90775 1.67499 1.36721 1.45595 1.21053 0.86947 0.94466 1.05658 0.81912 1.21695 0.97040 1.01912 0.94472 1.21480 0.94145 0.94220 1.04001 1.22954 1.00817 0.96835 0.91555 1.62553 1.03252 1.17332 1.38491 1.22200 0.94762 0.87478 1.02225 1.21295 0.94436 0.93922 1.02731 1.23145 0.97671 1.00163 1.02902 1.84581 1.05914 1.13448 1.92159 1.23005 0.97657 0.92968 1.55159 0.91027 1.26060 0.94616 1.04372 0.93938 1.70138 1.00886 1.37661 1.45553 0.85083 0.77613 0.76544 0.79284 1.19130 1.19885 1.18821 1.21547 0.88807 0.95060 0.94931 0.85576 1.25474 0.77014 0.77496 0.92356 1.90523 1.57629 1.62913 1.29972 1.86626 1.49037 1.52509 1.38389 1.23398 1.00099 0.97687 0.85139 0.91608 0.84878 0.92503 0.92641 0.87805 0.89781 0.89168 0.89728 0.91851 0.96068 0.88315 0.89970 0.91596 0.92812 0.91344 0.91930 0.92430 0.92648 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.44 10.50 -51.35 -0.54 -5.98 16 3 C 0.46 8.71 6.97 71.24 0.50 9.20 16 4 O -0.52 -12.56 13.55 28.42 0.39 -12.17 16 5 C -0.06 -1.04 2.57 -11.49 -0.03 -1.07 16 6 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 7 C -0.11 -1.87 4.88 30.67 0.15 -1.72 16 8 C -0.10 -1.72 6.09 30.65 0.19 -1.54 16 9 C 0.00 0.12 4.53 86.33 0.39 0.51 16 10 N -0.49 -11.31 4.75 -875.52 -4.16 -15.47 16 11 C 0.06 1.66 5.15 86.30 0.44 2.10 16 12 C -0.09 -2.74 4.47 30.59 0.14 -2.60 16 13 C -0.09 -3.62 5.67 71.98 0.41 -3.22 16 14 S -0.19 -10.15 21.44 -56.49 -1.21 -11.36 16 15 C -0.54 -31.51 9.50 67.95 0.65 -30.86 16 16 H 0.07 4.03 7.80 -2.91 -0.02 4.00 16 17 C 0.02 0.87 5.49 84.86 0.47 1.34 16 18 N -0.91 -54.98 13.22 21.65 0.29 -54.69 16 19 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 23 C 0.11 2.32 2.05 44.19 0.09 2.41 16 24 H 0.13 2.56 8.10 -2.39 -0.02 2.54 16 25 C 0.43 11.52 4.05 71.23 0.29 11.81 16 26 O -0.52 -15.58 11.23 21.96 0.25 -15.33 16 27 O -0.35 -9.30 9.25 -45.01 -0.42 -9.71 16 28 C 0.03 0.64 10.56 113.37 1.20 1.83 16 29 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.05 1.20 6.08 -2.39 -0.01 1.19 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 2.13 5.81 -2.39 -0.01 2.12 16 37 H 0.06 1.83 4.89 -4.60 -0.02 1.81 16 38 H 0.02 0.62 7.00 -2.39 -0.02 0.60 16 39 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.07 2.20 6.21 -2.39 -0.01 2.19 16 42 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 44 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.06 1.19 8.13 -2.38 -0.02 1.17 16 46 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 47 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -74.22 385.53 3.64 -70.58 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.95 Total: 18.15 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 6.07 Total: -10.30 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -3.87 Total: -70.16 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.32 Total: -43.20 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -10.15 SS G_CDS: -1.21 Total: -11.36 kcal Total: -74.22 3.64 -70.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441665745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.754 kcal (2) G-P(sol) polarization free energy of solvation -74.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds