Wall clock time and date at job start Wed Apr 1 2020 03:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.08998 * 109.50674 * 300.28215 * 5 3 2 7 7 C 1.53130 * 109.49791 * 60.35413 * 5 3 2 8 8 C 1.53116 * 109.15719 * 177.59384 * 7 5 3 9 9 C 1.53035 * 109.28510 * 302.34872 * 8 7 5 10 10 N 1.46846 * 109.52081 * 59.17614 * 9 8 7 11 11 C 1.46905 * 111.00134 * 174.16173 * 10 9 8 12 12 C 1.53004 * 109.47211 * 293.95961 * 11 10 9 13 13 C 1.52998 * 109.47050 * 179.97438 * 12 11 10 14 14 S 1.80996 * 109.47305 * 179.97438 * 13 12 11 15 15 C 1.76198 * 100.00156 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99999 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47336 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47438 * 119.99599 * 19 17 15 22 22 H 1.48504 * 109.47257 * 240.00005 * 19 17 15 23 23 C 1.46843 * 111.23732 * 298.28291 * 10 9 8 24 24 H 1.09003 * 109.42891 * 301.68704 * 23 10 9 25 25 C 1.50699 * 109.49805 * 181.71910 * 23 10 9 26 26 O 1.20820 * 120.00197 * 339.92791 * 25 23 10 27 27 O 1.34234 * 119.99704 * 159.92756 * 25 23 10 28 28 C 1.45204 * 116.99657 * 179.97438 * 27 25 23 29 29 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 30 30 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 32 32 H 1.08993 * 109.52161 * 297.50051 * 7 5 3 33 33 H 1.09000 * 109.51847 * 57.69738 * 7 5 3 34 34 H 1.09001 * 109.50524 * 62.28919 * 8 7 5 35 35 H 1.09001 * 109.50293 * 182.36899 * 8 7 5 36 36 H 1.08994 * 109.46581 * 179.19701 * 9 8 7 37 37 H 1.09004 * 109.45924 * 299.16643 * 9 8 7 38 38 H 1.09002 * 109.46584 * 53.95761 * 11 10 9 39 39 H 1.08996 * 109.47152 * 173.95346 * 11 10 9 40 40 H 1.09003 * 109.46702 * 299.99648 * 12 11 10 41 41 H 1.09002 * 109.46900 * 59.99582 * 12 11 10 42 42 H 1.09002 * 109.46989 * 299.99950 * 13 12 11 43 43 H 1.09010 * 109.47049 * 59.99600 * 13 12 11 44 44 H 0.97006 * 119.99784 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.47054 * 60.00176 * 28 27 25 46 46 H 1.08997 * 109.46782 * 179.97438 * 28 27 25 47 47 H 1.08996 * 109.47331 * 300.00227 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9530 0.7785 0.8964 7 6 4.1195 0.5858 -1.2442 8 6 5.6445 0.7229 -1.2604 9 6 6.0190 2.2062 -1.2210 10 7 5.4673 2.8195 -0.0062 11 6 5.9226 4.2090 0.1355 12 6 7.4342 4.2289 0.3718 13 6 7.9084 5.6761 0.5187 14 16 9.6964 5.6996 0.7990 15 6 9.9630 7.4364 0.9288 16 1 9.1314 8.1189 0.8341 17 6 11.2418 7.9274 1.1528 18 7 12.2554 7.0955 1.2678 19 14 11.5243 9.7686 1.2912 20 1 10.2322 10.4816 1.1262 21 1 12.0967 10.0828 2.6250 22 1 12.4689 10.2055 0.2318 23 6 4.0010 2.7421 0.0100 24 1 3.6018 3.2413 -0.8729 25 6 3.4753 3.4185 1.2498 26 8 4.2025 3.5894 2.1993 27 8 2.1989 3.8312 1.2991 28 6 1.7610 4.4743 2.5251 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8488 -0.4698 -1.2283 33 1 3.7021 1.0567 -2.1342 34 1 6.0645 0.2184 -0.3902 35 1 6.0409 0.2710 -2.1696 36 1 7.1043 2.3068 -1.2180 37 1 5.6104 2.7073 -2.0985 38 1 5.6899 4.7621 -0.7745 39 1 5.4164 4.6728 0.9821 40 1 7.6669 3.6757 1.2818 41 1 7.9404 3.7651 -0.4749 42 1 7.6757 6.2288 -0.3915 43 1 7.4021 6.1402 1.3652 44 1 13.1491 7.4387 1.4247 45 1 2.3638 5.3647 2.7037 46 1 0.7128 4.7583 2.4319 47 1 1.8777 3.7831 3.3597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441665748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:57 Heat of formation + Delta-G solvation = -166.356222 kcal Electronic energy + Delta-G solvation = -29069.667262 eV Core-core repulsion = 24958.236319 eV Total energy + Delta-G solvation = -4111.430943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53087 -40.31422 -38.86108 -36.84537 -36.33061 -35.03796 -32.40462 -32.07041 -31.84311 -28.49319 -27.78476 -26.42176 -25.48236 -25.00034 -23.85150 -21.79607 -21.18820 -20.53895 -20.00091 -18.05744 -17.74539 -17.40036 -17.25843 -16.90805 -16.34217 -16.31287 -15.41296 -15.16865 -14.81550 -14.76596 -14.39606 -14.25360 -14.05059 -13.97054 -13.53404 -13.34828 -13.23878 -12.97661 -12.80405 -12.60229 -12.22594 -12.07482 -11.81783 -11.75871 -11.61330 -11.33956 -11.18302 -11.14282 -11.05117 -11.00527 -10.75751 -10.69894 -10.60125 -10.51454 -10.32367 -10.01256 -9.49617 -9.02655 -8.52756 -8.24535 -6.47294 -6.18972 -3.88251 1.85323 2.05549 2.25819 2.49947 3.23540 3.24923 3.32508 3.52974 3.80374 4.02709 4.26329 4.27282 4.40178 4.68062 4.73441 4.75038 4.79112 4.80472 4.82724 5.01341 5.08457 5.13197 5.15424 5.16960 5.21395 5.28366 5.39162 5.41080 5.42470 5.43991 5.58852 5.67821 5.75911 5.78989 5.95051 6.01603 6.03646 6.12828 6.32544 6.37235 6.65314 6.70690 6.87203 6.94339 7.41280 7.64981 7.73729 8.41130 9.27494 10.89274 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.002322 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.493993 B =12054.909699 C =13135.315126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.451 3.549 4 O -0.471 6.471 5 C -0.068 4.068 6 H 0.124 0.876 7 C -0.108 4.108 8 C -0.118 4.118 9 C 0.049 3.951 10 N -0.517 5.517 11 C 0.050 3.950 12 C -0.087 4.087 13 C -0.112 4.112 14 S -0.131 6.131 15 C -0.514 4.514 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.112 3.888 24 H 0.081 0.919 25 C 0.456 3.544 26 O -0.479 6.479 27 O -0.327 6.327 28 C 0.032 3.968 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.266 0.734 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.650 -16.413 -5.183 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.291 3.709 4 O -0.355 6.355 5 C -0.088 4.088 6 H 0.142 0.858 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.078 4.078 10 N -0.243 5.243 11 C -0.078 4.078 12 C -0.126 4.126 13 C -0.261 4.261 14 S 0.098 5.902 15 C -0.662 4.662 16 H 0.090 0.910 17 C -0.139 4.139 18 N -0.506 5.506 19 Si 0.745 3.255 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.002 3.998 24 H 0.099 0.901 25 C 0.297 3.703 26 O -0.365 6.365 27 O -0.242 6.242 28 C -0.062 4.062 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.583 -17.154 -4.364 29.486 hybrid contribution -1.227 2.867 -0.373 3.141 sum -24.810 -14.286 -4.737 29.019 Atomic orbital electron populations 1.23263 0.76199 1.03650 1.02622 1.86485 1.23430 1.33204 1.84329 1.23582 0.91722 0.81882 0.73704 1.90822 1.66532 1.35361 1.42811 1.20959 0.87643 0.96017 1.04183 0.85775 1.21599 0.96883 1.01316 0.94769 1.21656 0.94130 0.96266 1.03550 1.22312 1.01699 0.94310 0.89525 1.61671 1.03714 1.20062 1.38877 1.22437 0.98092 0.86243 1.01008 1.21220 0.92107 0.96235 1.03054 1.23223 1.02466 0.97824 1.02628 1.84593 0.99187 1.12261 1.94194 1.22736 0.96405 0.90641 1.56464 0.90976 1.25015 0.95099 0.99019 0.94756 1.70039 0.99716 1.34378 1.46420 0.86117 0.78326 0.83200 0.77892 1.19655 1.20580 1.20610 1.20875 0.90572 0.93730 0.94633 0.90088 1.23311 0.80749 0.76878 0.89410 1.90714 1.57526 1.51204 1.37083 1.86803 1.28215 1.69217 1.39969 1.23254 1.00524 0.97323 0.85127 0.91838 0.88104 0.91888 0.89512 0.91166 0.90056 0.90169 0.88444 0.94272 0.94819 0.89567 0.90426 0.91628 0.92428 0.92140 0.92416 0.91958 0.88360 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.03 10.50 -39.24 -0.41 -3.44 16 3 C 0.45 4.49 6.98 36.00 0.25 4.74 16 4 O -0.47 -5.72 12.42 -26.90 -0.33 -6.06 16 5 C -0.07 -0.64 2.30 -91.69 -0.21 -0.85 16 6 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 7 C -0.11 -0.75 5.22 -26.60 -0.14 -0.89 16 8 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 9 C 0.05 0.49 5.30 -3.84 -0.02 0.47 16 10 N -0.52 -6.51 4.25 -228.08 -0.97 -7.48 16 11 C 0.05 0.75 4.55 -3.82 -0.02 0.73 16 12 C -0.09 -1.51 5.15 -26.73 -0.14 -1.65 16 13 C -0.11 -2.38 5.67 37.16 0.21 -2.16 16 14 S -0.13 -3.51 21.44 -107.50 -2.30 -5.81 16 15 C -0.51 -15.09 9.50 30.94 0.29 -14.80 16 16 H 0.07 2.06 7.80 -52.49 -0.41 1.66 16 17 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 18 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 19 Si 0.92 21.97 29.55 -169.99 -5.02 16.94 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.11 1.31 1.55 -68.88 -0.11 1.20 16 24 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 25 C 0.46 6.34 5.87 36.01 0.21 6.55 16 26 O -0.48 -7.97 14.39 -18.74 -0.27 -8.24 16 27 O -0.33 -4.27 7.37 -47.41 -0.35 -4.62 16 28 C 0.03 0.33 10.56 101.05 1.07 1.39 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.05 6.22 -51.93 -0.32 0.72 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 39 H 0.09 1.44 5.42 -51.93 -0.28 1.15 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.07 1.07 6.44 -51.93 -0.33 0.74 16 42 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 43 H 0.06 1.31 8.14 -51.91 -0.42 0.89 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -35.14 391.73 -8.48 -43.62 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.66 Total: -2.08 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 2.21 Total: -3.09 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: -0.24 Total: -33.13 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -1.36 Total: -22.36 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.14 -8.48 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441665748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.739 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds