Wall clock time and date at job start Wed Apr 1 2020 03:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.08998 * 109.50674 * 300.28215 * 5 3 2 7 7 C 1.53130 * 109.49791 * 60.35413 * 5 3 2 8 8 C 1.53116 * 109.15719 * 177.59384 * 7 5 3 9 9 C 1.53035 * 109.28510 * 302.34872 * 8 7 5 10 10 N 1.46846 * 109.52081 * 59.17614 * 9 8 7 11 11 C 1.46905 * 111.00134 * 174.16173 * 10 9 8 12 12 C 1.53004 * 109.47211 * 293.95961 * 11 10 9 13 13 C 1.52998 * 109.47050 * 179.97438 * 12 11 10 14 14 S 1.80996 * 109.47305 * 179.97438 * 13 12 11 15 15 C 1.76198 * 100.00156 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99999 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47336 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47438 * 119.99599 * 19 17 15 22 22 H 1.48504 * 109.47257 * 240.00005 * 19 17 15 23 23 C 1.46843 * 111.23732 * 298.28291 * 10 9 8 24 24 H 1.09003 * 109.42891 * 301.68704 * 23 10 9 25 25 C 1.50699 * 109.49805 * 181.71910 * 23 10 9 26 26 O 1.20820 * 120.00197 * 339.92791 * 25 23 10 27 27 O 1.34234 * 119.99704 * 159.92756 * 25 23 10 28 28 C 1.45204 * 116.99657 * 179.97438 * 27 25 23 29 29 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 30 30 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 32 32 H 1.08993 * 109.52161 * 297.50051 * 7 5 3 33 33 H 1.09000 * 109.51847 * 57.69738 * 7 5 3 34 34 H 1.09001 * 109.50524 * 62.28919 * 8 7 5 35 35 H 1.09001 * 109.50293 * 182.36899 * 8 7 5 36 36 H 1.08994 * 109.46581 * 179.19701 * 9 8 7 37 37 H 1.09004 * 109.45924 * 299.16643 * 9 8 7 38 38 H 1.09002 * 109.46584 * 53.95761 * 11 10 9 39 39 H 1.08996 * 109.47152 * 173.95346 * 11 10 9 40 40 H 1.09003 * 109.46702 * 299.99648 * 12 11 10 41 41 H 1.09002 * 109.46900 * 59.99582 * 12 11 10 42 42 H 1.09002 * 109.46989 * 299.99950 * 13 12 11 43 43 H 1.09010 * 109.47049 * 59.99600 * 13 12 11 44 44 H 0.97006 * 119.99784 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.47054 * 60.00176 * 28 27 25 46 46 H 1.08997 * 109.46782 * 179.97438 * 28 27 25 47 47 H 1.08996 * 109.47331 * 300.00227 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9530 0.7785 0.8964 7 6 4.1195 0.5858 -1.2442 8 6 5.6445 0.7229 -1.2604 9 6 6.0190 2.2062 -1.2210 10 7 5.4673 2.8195 -0.0062 11 6 5.9226 4.2090 0.1355 12 6 7.4342 4.2289 0.3718 13 6 7.9084 5.6761 0.5187 14 16 9.6964 5.6996 0.7990 15 6 9.9630 7.4364 0.9288 16 1 9.1314 8.1189 0.8341 17 6 11.2418 7.9274 1.1528 18 7 12.2554 7.0955 1.2678 19 14 11.5243 9.7686 1.2912 20 1 10.2322 10.4816 1.1262 21 1 12.0967 10.0828 2.6250 22 1 12.4689 10.2055 0.2318 23 6 4.0010 2.7421 0.0100 24 1 3.6018 3.2413 -0.8729 25 6 3.4753 3.4185 1.2498 26 8 4.2025 3.5894 2.1993 27 8 2.1989 3.8312 1.2991 28 6 1.7610 4.4743 2.5251 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8488 -0.4698 -1.2283 33 1 3.7021 1.0567 -2.1342 34 1 6.0645 0.2184 -0.3902 35 1 6.0409 0.2710 -2.1696 36 1 7.1043 2.3068 -1.2180 37 1 5.6104 2.7073 -2.0985 38 1 5.6899 4.7621 -0.7745 39 1 5.4164 4.6728 0.9821 40 1 7.6669 3.6757 1.2818 41 1 7.9404 3.7651 -0.4749 42 1 7.6757 6.2288 -0.3915 43 1 7.4021 6.1402 1.3652 44 1 13.1491 7.4387 1.4247 45 1 2.3638 5.3647 2.7037 46 1 0.7128 4.7583 2.4319 47 1 1.8777 3.7831 3.3597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441665748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:57 Heat of formation + Delta-G solvation = -187.896275 kcal Electronic energy + Delta-G solvation = -29070.601309 eV Core-core repulsion = 24958.236319 eV Total energy + Delta-G solvation = -4112.364990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.41704 -41.18272 -39.76610 -37.64805 -37.31248 -36.12475 -34.61722 -33.18051 -32.74222 -29.26325 -28.47405 -27.96991 -27.27777 -25.76157 -24.95304 -22.83562 -22.05879 -21.65382 -20.81412 -19.56937 -18.94111 -18.58133 -18.13533 -17.74263 -17.27405 -17.08427 -16.90994 -16.57800 -16.39102 -15.82983 -15.64339 -15.22516 -15.01417 -14.93788 -14.69460 -14.35133 -14.27027 -14.06029 -13.70763 -13.52699 -13.40454 -13.19520 -13.08898 -12.99934 -12.91455 -12.63917 -12.53450 -12.44324 -12.37515 -11.98971 -11.82380 -11.75501 -11.61704 -11.59708 -11.41770 -11.21284 -11.16878 -11.09496 -10.34054 -9.49689 -8.67126 -8.38449 -6.14400 0.98206 1.14423 1.29815 1.37159 1.46950 1.52461 1.62168 1.74334 2.26593 2.75377 2.95430 3.25559 3.31284 3.49803 3.70520 3.86052 3.92967 3.95663 4.02293 4.11027 4.22350 4.23645 4.24813 4.30863 4.34672 4.35024 4.37741 4.48481 4.61145 4.61747 4.65078 4.73358 4.75939 4.79326 4.86997 5.07818 5.12465 5.19692 5.25661 5.32061 5.36605 5.38760 5.41433 5.76617 5.94558 6.17314 6.69127 6.70751 7.03636 8.71237 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.002322 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.493993 B =12054.909699 C =13135.315126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.454 3.546 4 O -0.497 6.497 5 C -0.065 4.065 6 H 0.123 0.877 7 C -0.100 4.100 8 C -0.112 4.112 9 C 0.043 3.957 10 N -0.526 5.526 11 C 0.062 3.938 12 C -0.073 4.073 13 C -0.088 4.088 14 S -0.188 6.188 15 C -0.539 4.539 16 H 0.070 0.930 17 C 0.015 3.985 18 N -0.906 5.906 19 Si 0.995 3.005 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.269 1.269 23 C 0.114 3.886 24 H 0.087 0.913 25 C 0.454 3.546 26 O -0.515 6.515 27 O -0.332 6.332 28 C 0.026 3.974 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.272 0.728 45 H 0.056 0.944 46 H 0.126 0.874 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.046 -17.005 -6.454 31.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.296 3.704 4 O -0.384 6.384 5 C -0.085 4.085 6 H 0.141 0.859 7 C -0.138 4.138 8 C -0.149 4.149 9 C -0.083 4.083 10 N -0.252 5.252 11 C -0.067 4.067 12 C -0.112 4.112 13 C -0.238 4.238 14 S 0.041 5.959 15 C -0.687 4.687 16 H 0.088 0.912 17 C -0.190 4.190 18 N -0.542 5.542 19 Si 0.817 3.183 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.194 1.194 23 C 0.004 3.996 24 H 0.105 0.895 25 C 0.297 3.703 26 O -0.404 6.404 27 O -0.247 6.247 28 C -0.068 4.068 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.145 0.855 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.001 -17.780 -5.649 31.194 hybrid contribution -0.914 2.977 0.041 3.114 sum -25.915 -14.803 -5.608 30.367 Atomic orbital electron populations 1.23536 0.74673 1.05622 1.02498 1.86474 1.24902 1.32194 1.83838 1.23629 0.91836 0.81953 0.72979 1.90811 1.67097 1.36252 1.44207 1.20968 0.87596 0.94378 1.05539 0.85928 1.21625 0.96268 1.02262 0.93633 1.21644 0.94523 0.94180 1.04573 1.22457 1.01079 0.96099 0.88690 1.61595 1.04562 1.18368 1.40713 1.22141 0.95758 0.88122 1.00680 1.21068 0.94068 0.93285 1.02791 1.23136 0.97728 1.00543 1.02364 1.84561 1.04715 1.12118 1.94524 1.23061 0.96960 0.91461 1.57221 0.91203 1.26074 0.94570 1.04535 0.93847 1.70159 1.00334 1.36855 1.46878 0.84958 0.78558 0.76405 0.78378 1.18895 1.19645 1.19371 1.20943 0.89725 0.95308 0.93587 0.89542 1.23819 0.80683 0.76160 0.89669 1.90695 1.58346 1.52803 1.38549 1.86808 1.27775 1.69056 1.41046 1.23477 1.01981 0.96895 0.84409 0.91680 0.85123 0.92351 0.87483 0.90305 0.90504 0.87765 0.89362 0.93205 0.93786 0.91507 0.91967 0.90469 0.91783 0.93021 0.91901 0.92548 0.85543 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.32 10.50 -51.34 -0.54 -5.86 16 3 C 0.45 8.40 6.98 71.23 0.50 8.89 16 4 O -0.50 -11.59 12.42 29.73 0.37 -11.22 16 5 C -0.07 -1.12 2.30 -11.49 -0.03 -1.14 16 6 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 7 C -0.10 -1.11 5.22 30.68 0.16 -0.95 16 8 C -0.11 -1.37 6.09 30.64 0.19 -1.18 16 9 C 0.04 0.79 5.30 86.33 0.46 1.25 16 10 N -0.53 -12.88 4.25 -875.52 -3.72 -16.60 16 11 C 0.06 1.84 4.55 86.30 0.39 2.23 16 12 C -0.07 -2.56 5.15 30.59 0.16 -2.40 16 13 C -0.09 -3.80 5.67 71.98 0.41 -3.39 16 14 S -0.19 -10.35 21.44 -56.49 -1.21 -11.56 16 15 C -0.54 -32.15 9.50 67.95 0.65 -31.51 16 16 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 17 C 0.01 0.86 5.49 84.86 0.47 1.32 16 18 N -0.91 -55.58 13.22 21.65 0.29 -55.30 16 19 Si 1.00 45.01 29.55 68.60 2.03 47.04 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 C 0.11 2.58 1.55 44.19 0.07 2.65 16 24 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 25 C 0.45 12.72 5.87 71.24 0.42 13.14 16 26 O -0.52 -17.64 14.39 21.98 0.32 -17.32 16 27 O -0.33 -8.63 7.37 -43.67 -0.32 -8.96 16 28 C 0.03 0.53 10.56 113.37 1.20 1.73 16 29 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 30 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 1.78 6.22 -2.39 -0.01 1.77 16 37 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.04 1.20 8.12 -2.39 -0.02 1.18 16 39 H 0.07 2.27 5.42 -2.39 -0.01 2.26 16 40 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.08 2.51 6.44 -2.39 -0.02 2.50 16 42 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 45 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 46 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 Total: -1.00 -77.28 391.73 4.38 -72.90 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.95 Total: 14.77 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 6.22 Total: -7.88 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -3.44 Total: -71.90 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.18 Total: -43.36 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -10.35 SS G_CDS: -1.21 Total: -11.56 kcal Total: -77.28 4.38 -72.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441665748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.994 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds