Wall clock time and date at job start Wed Apr 1 2020 03:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99575 * 2 1 4 4 O 1.20821 * 120.00389 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99853 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.50199 * 59.92002 * 5 3 2 7 7 C 1.53124 * 109.50226 * 299.80372 * 5 3 2 8 8 C 1.53116 * 109.15766 * 182.40540 * 7 5 3 9 9 C 1.53032 * 109.27928 * 57.65616 * 8 7 5 10 10 N 1.46851 * 109.52182 * 300.81716 * 9 8 7 11 11 C 1.46906 * 111.00022 * 185.84191 * 10 9 8 12 12 C 1.53002 * 109.47053 * 45.78785 * 11 10 9 13 13 C 1.52996 * 109.46891 * 179.97438 * 12 11 10 14 14 S 1.81002 * 109.46909 * 180.02562 * 13 12 11 15 15 C 1.76208 * 99.99928 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99585 * 0.02562 * 15 14 13 17 17 C 1.38798 * 119.99699 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00589 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47448 * 119.99862 * 19 17 15 22 22 H 1.48494 * 109.47065 * 240.00397 * 19 17 15 23 23 C 1.46844 * 111.19575 * 61.74475 * 10 9 8 24 24 H 1.09004 * 109.46405 * 58.27613 * 23 10 9 25 25 C 1.50708 * 109.45950 * 178.25138 * 23 10 9 26 26 O 1.20823 * 119.99860 * 20.00063 * 25 23 10 27 27 O 1.34228 * 119.99884 * 200.00065 * 25 23 10 28 28 C 1.45196 * 116.99925 * 180.02562 * 27 25 23 29 29 H 1.08994 * 109.47347 * 59.99996 * 1 2 3 30 30 H 1.09008 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47362 * 299.99425 * 1 2 3 32 32 H 1.08999 * 109.52140 * 302.31058 * 7 5 3 33 33 H 1.08996 * 109.52131 * 62.43561 * 7 5 3 34 34 H 1.09001 * 109.49884 * 177.59638 * 8 7 5 35 35 H 1.08994 * 109.50434 * 297.67275 * 8 7 5 36 36 H 1.09005 * 109.46114 * 180.80604 * 9 8 7 37 37 H 1.08992 * 109.46504 * 60.83432 * 9 8 7 38 38 H 1.08992 * 109.47459 * 165.78868 * 11 10 9 39 39 H 1.09004 * 109.47040 * 285.79019 * 11 10 9 40 40 H 1.09001 * 109.47142 * 300.00160 * 12 11 10 41 41 H 1.09004 * 109.47006 * 60.00213 * 12 11 10 42 42 H 1.09001 * 109.47372 * 300.00036 * 13 12 11 43 43 H 1.08996 * 109.47261 * 60.00575 * 13 12 11 44 44 H 0.96990 * 120.00389 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.47105 * 59.99892 * 28 27 25 46 46 H 1.09003 * 109.46847 * 179.97438 * 28 27 25 47 47 H 1.08998 * 109.47393 * 299.99811 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9563 0.7800 -0.8899 7 6 4.1149 0.5851 1.2515 8 6 5.6397 0.7222 1.2735 9 6 6.0142 2.2055 1.2367 10 7 5.4671 2.8198 0.0202 11 6 5.9229 4.2095 -0.1186 12 6 7.4264 4.2828 0.1553 13 6 7.9012 5.7300 0.0101 14 16 9.6800 5.8166 0.3333 15 6 9.9488 7.5430 0.1045 16 1 9.1229 8.1881 -0.1563 17 6 11.2218 8.0737 0.2604 18 7 12.2283 7.2875 0.5787 19 14 11.5067 9.9040 0.0185 20 1 10.2228 10.5627 -0.3325 21 1 12.0384 10.4925 1.2739 22 1 12.4852 10.1118 -1.0789 23 6 4.0009 2.7423 -0.0004 24 1 3.5984 3.2403 0.8817 25 6 3.4797 3.4203 -1.2414 26 8 4.2108 3.5932 -2.1876 27 8 2.2033 3.8321 -1.2953 28 6 1.7700 4.4767 -2.5220 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 3.6940 1.0552 2.1403 33 1 3.8432 -0.4703 1.2344 34 1 6.0326 0.2701 2.1842 35 1 6.0630 0.2178 0.4050 36 1 7.0996 2.3062 1.2378 37 1 5.6023 2.7060 2.1130 38 1 5.7206 4.5588 -1.1310 39 1 5.3923 4.8389 0.5959 40 1 7.6288 3.9334 1.1678 41 1 7.9570 3.6533 -0.5592 42 1 7.6989 6.0789 -1.0026 43 1 7.3708 6.3598 0.7242 44 1 13.1178 7.6585 0.6880 45 1 1.8907 3.7869 -3.3572 46 1 0.7209 4.7590 -2.4331 47 1 2.3728 5.3679 -2.6968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441665751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:00 Heat of formation + Delta-G solvation = -165.013604 kcal Electronic energy + Delta-G solvation = -29054.482122 eV Core-core repulsion = 24943.109399 eV Total energy + Delta-G solvation = -4111.372723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52707 -40.30867 -38.90984 -36.84747 -36.33865 -35.10855 -32.42072 -32.11554 -31.74120 -28.49448 -27.79500 -26.42135 -25.51799 -25.03145 -23.88082 -21.90890 -21.22452 -20.37094 -19.97976 -18.04935 -17.76964 -17.41716 -17.26133 -16.89585 -16.34113 -16.31634 -15.41945 -15.14997 -14.95373 -14.78135 -14.34821 -14.24421 -14.06439 -13.98993 -13.53568 -13.33241 -13.24048 -12.99234 -12.76812 -12.60226 -12.23854 -12.12157 -11.86066 -11.77724 -11.63186 -11.30127 -11.18050 -11.14014 -11.06202 -10.98517 -10.76357 -10.71194 -10.61227 -10.51133 -10.34337 -10.05761 -9.51220 -9.04267 -8.49833 -8.27639 -6.49846 -6.20698 -3.90345 1.85275 2.04852 2.25788 2.49574 3.22661 3.23971 3.31659 3.52662 3.79175 4.03198 4.24647 4.27875 4.41061 4.68878 4.73866 4.75529 4.80011 4.81965 4.83623 4.99467 5.06679 5.13117 5.15379 5.15670 5.24040 5.29679 5.36272 5.38807 5.39891 5.47134 5.57547 5.66586 5.72044 5.78770 5.94631 6.01991 6.03732 6.15258 6.31722 6.33784 6.60528 6.69237 6.84499 6.90158 7.41359 7.63524 7.73079 8.39588 9.25906 10.87581 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002309 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.017656 B =12126.166728 C =13241.214976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.451 3.549 4 O -0.471 6.471 5 C -0.068 4.068 6 H 0.124 0.876 7 C -0.108 4.108 8 C -0.118 4.118 9 C 0.043 3.957 10 N -0.517 5.517 11 C 0.049 3.951 12 C -0.096 4.096 13 C -0.112 4.112 14 S -0.131 6.131 15 C -0.514 4.514 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.112 3.888 24 H 0.082 0.918 25 C 0.457 3.543 26 O -0.483 6.483 27 O -0.327 6.327 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.266 0.734 45 H 0.058 0.942 46 H 0.098 0.902 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.465 -16.888 0.429 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.291 3.709 4 O -0.355 6.355 5 C -0.088 4.088 6 H 0.142 0.858 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.084 4.084 10 N -0.243 5.243 11 C -0.079 4.079 12 C -0.135 4.135 13 C -0.262 4.262 14 S 0.097 5.903 15 C -0.662 4.662 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.506 5.506 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.002 3.998 24 H 0.100 0.900 25 C 0.298 3.702 26 O -0.369 6.369 27 O -0.241 6.241 28 C -0.062 4.062 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.116 0.884 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.402 -17.584 0.025 29.272 hybrid contribution -1.237 2.831 -0.079 3.090 sum -24.639 -14.753 -0.054 28.718 Atomic orbital electron populations 1.23263 0.76207 1.03648 1.02621 1.86487 1.23427 1.33199 1.84337 1.23587 0.91727 0.81880 0.73700 1.90818 1.66531 1.35364 1.42808 1.20960 0.87645 0.96002 1.04171 0.85821 1.21603 0.96972 1.01286 0.94741 1.21662 0.94068 0.96346 1.03521 1.22402 1.02097 0.94186 0.89674 1.61767 1.03847 1.19864 1.38797 1.22477 0.96708 0.86021 1.02672 1.21411 0.92936 0.96698 1.02451 1.23220 1.02414 0.97573 1.02958 1.84570 1.00258 1.13810 1.91678 1.22733 0.97090 0.91947 1.54469 0.90941 1.25015 0.95082 0.99053 0.94708 1.70026 1.00268 1.35153 1.45114 0.86116 0.78368 0.83087 0.77970 1.19634 1.20594 1.20567 1.20916 0.90570 0.93716 0.94631 0.89993 1.23325 0.80721 0.76826 0.89332 1.90684 1.57347 1.51445 1.37418 1.86804 1.28230 1.69158 1.39957 1.23249 1.00590 0.97267 0.85102 0.91903 0.88104 0.91826 0.91146 0.89534 0.90141 0.90129 0.87966 0.94178 0.88895 0.94969 0.91290 0.90391 0.92001 0.92366 0.92390 0.92323 0.88356 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.04 10.50 -39.26 -0.41 -3.45 16 3 C 0.45 4.51 6.98 36.01 0.25 4.76 16 4 O -0.47 -5.74 12.42 -26.88 -0.33 -6.08 16 5 C -0.07 -0.64 2.31 -91.69 -0.21 -0.85 16 6 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 7 C -0.11 -0.77 5.22 -26.61 -0.14 -0.91 16 8 C -0.12 -0.90 6.09 -26.65 -0.16 -1.07 16 9 C 0.04 0.45 4.85 -3.83 -0.02 0.43 16 10 N -0.52 -6.53 4.40 -228.07 -1.00 -7.53 16 11 C 0.05 0.73 4.57 -3.82 -0.02 0.72 16 12 C -0.10 -1.61 4.47 -26.73 -0.12 -1.73 16 13 C -0.11 -2.34 5.67 37.16 0.21 -2.13 16 14 S -0.13 -3.48 21.44 -107.50 -2.30 -5.78 16 15 C -0.51 -14.99 9.50 30.94 0.29 -14.69 16 16 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 17 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 18 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 19 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.11 1.31 1.51 -68.88 -0.10 1.21 16 24 H 0.08 0.95 8.08 -51.93 -0.42 0.54 16 25 C 0.46 6.31 6.08 36.01 0.22 6.53 16 26 O -0.48 -7.86 14.27 -18.75 -0.27 -8.13 16 27 O -0.33 -4.24 7.37 -47.39 -0.35 -4.59 16 28 C 0.03 0.32 10.56 101.05 1.07 1.39 16 29 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 1.14 5.81 -51.93 -0.30 0.84 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 1.56 5.98 -51.93 -0.31 1.25 16 39 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.07 1.09 6.21 -51.93 -0.32 0.77 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.06 1.32 8.14 -51.91 -0.42 0.89 16 43 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -34.77 390.71 -8.49 -43.26 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.66 Total: -1.80 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 2.24 Total: -3.14 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: -0.27 Total: -33.01 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.36 Total: -22.25 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.77 -8.49 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441665751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.754 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds