Wall clock time and date at job start Wed Apr 1 2020 03:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99575 * 2 1 4 4 O 1.20821 * 120.00389 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99853 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.50199 * 59.92002 * 5 3 2 7 7 C 1.53124 * 109.50226 * 299.80372 * 5 3 2 8 8 C 1.53116 * 109.15766 * 182.40540 * 7 5 3 9 9 C 1.53032 * 109.27928 * 57.65616 * 8 7 5 10 10 N 1.46851 * 109.52182 * 300.81716 * 9 8 7 11 11 C 1.46906 * 111.00022 * 185.84191 * 10 9 8 12 12 C 1.53002 * 109.47053 * 45.78785 * 11 10 9 13 13 C 1.52996 * 109.46891 * 179.97438 * 12 11 10 14 14 S 1.81002 * 109.46909 * 180.02562 * 13 12 11 15 15 C 1.76208 * 99.99928 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99585 * 0.02562 * 15 14 13 17 17 C 1.38798 * 119.99699 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00589 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47448 * 119.99862 * 19 17 15 22 22 H 1.48494 * 109.47065 * 240.00397 * 19 17 15 23 23 C 1.46844 * 111.19575 * 61.74475 * 10 9 8 24 24 H 1.09004 * 109.46405 * 58.27613 * 23 10 9 25 25 C 1.50708 * 109.45950 * 178.25138 * 23 10 9 26 26 O 1.20823 * 119.99860 * 20.00063 * 25 23 10 27 27 O 1.34228 * 119.99884 * 200.00065 * 25 23 10 28 28 C 1.45196 * 116.99925 * 180.02562 * 27 25 23 29 29 H 1.08994 * 109.47347 * 59.99996 * 1 2 3 30 30 H 1.09008 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47362 * 299.99425 * 1 2 3 32 32 H 1.08999 * 109.52140 * 302.31058 * 7 5 3 33 33 H 1.08996 * 109.52131 * 62.43561 * 7 5 3 34 34 H 1.09001 * 109.49884 * 177.59638 * 8 7 5 35 35 H 1.08994 * 109.50434 * 297.67275 * 8 7 5 36 36 H 1.09005 * 109.46114 * 180.80604 * 9 8 7 37 37 H 1.08992 * 109.46504 * 60.83432 * 9 8 7 38 38 H 1.08992 * 109.47459 * 165.78868 * 11 10 9 39 39 H 1.09004 * 109.47040 * 285.79019 * 11 10 9 40 40 H 1.09001 * 109.47142 * 300.00160 * 12 11 10 41 41 H 1.09004 * 109.47006 * 60.00213 * 12 11 10 42 42 H 1.09001 * 109.47372 * 300.00036 * 13 12 11 43 43 H 1.08996 * 109.47261 * 60.00575 * 13 12 11 44 44 H 0.96990 * 120.00389 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.47105 * 59.99892 * 28 27 25 46 46 H 1.09003 * 109.46847 * 179.97438 * 28 27 25 47 47 H 1.08998 * 109.47393 * 299.99811 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9563 0.7800 -0.8899 7 6 4.1149 0.5851 1.2515 8 6 5.6397 0.7222 1.2735 9 6 6.0142 2.2055 1.2367 10 7 5.4671 2.8198 0.0202 11 6 5.9229 4.2095 -0.1186 12 6 7.4264 4.2828 0.1553 13 6 7.9012 5.7300 0.0101 14 16 9.6800 5.8166 0.3333 15 6 9.9488 7.5430 0.1045 16 1 9.1229 8.1881 -0.1563 17 6 11.2218 8.0737 0.2604 18 7 12.2283 7.2875 0.5787 19 14 11.5067 9.9040 0.0185 20 1 10.2228 10.5627 -0.3325 21 1 12.0384 10.4925 1.2739 22 1 12.4852 10.1118 -1.0789 23 6 4.0009 2.7423 -0.0004 24 1 3.5984 3.2403 0.8817 25 6 3.4797 3.4203 -1.2414 26 8 4.2108 3.5932 -2.1876 27 8 2.2033 3.8321 -1.2953 28 6 1.7700 4.4767 -2.5220 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 3.6940 1.0552 2.1403 33 1 3.8432 -0.4703 1.2344 34 1 6.0326 0.2701 2.1842 35 1 6.0630 0.2178 0.4050 36 1 7.0996 2.3062 1.2378 37 1 5.6023 2.7060 2.1130 38 1 5.7206 4.5588 -1.1310 39 1 5.3923 4.8389 0.5959 40 1 7.6288 3.9334 1.1678 41 1 7.9570 3.6533 -0.5592 42 1 7.6989 6.0789 -1.0026 43 1 7.3708 6.3598 0.7242 44 1 13.1178 7.6585 0.6880 45 1 1.8907 3.7869 -3.3572 46 1 0.7209 4.7590 -2.4331 47 1 2.3728 5.3679 -2.6968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441665751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:59 Heat of formation + Delta-G solvation = -186.291253 kcal Electronic energy + Delta-G solvation = -29055.404790 eV Core-core repulsion = 24943.109399 eV Total energy + Delta-G solvation = -4112.295391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.41172 -41.17473 -39.82984 -37.64216 -37.32369 -36.17708 -34.61915 -33.16506 -32.70620 -29.26427 -28.47936 -27.95756 -27.28417 -25.81870 -25.01224 -22.89678 -22.11021 -21.46397 -20.81762 -19.57039 -18.93821 -18.59429 -18.14017 -17.71406 -17.24891 -17.12855 -16.91058 -16.59840 -16.37858 -15.94294 -15.64231 -15.17794 -15.00963 -14.95349 -14.68576 -14.35940 -14.25596 -14.06742 -13.70872 -13.50361 -13.45390 -13.20924 -13.09708 -12.99031 -12.93525 -12.67519 -12.54223 -12.38492 -12.37656 -11.99247 -11.82618 -11.74839 -11.63699 -11.57495 -11.42602 -11.22278 -11.17004 -11.09742 -10.34374 -9.49081 -8.67050 -8.38762 -6.14480 0.97837 1.14301 1.29875 1.37004 1.46814 1.52425 1.62029 1.73818 2.26216 2.75836 2.95227 3.25137 3.30481 3.50090 3.70711 3.86578 3.91932 3.95937 4.00503 4.10701 4.19445 4.22342 4.24947 4.26704 4.33678 4.34756 4.37685 4.47830 4.61179 4.62166 4.64433 4.73756 4.75922 4.79890 4.87661 5.08813 5.12846 5.17702 5.22064 5.32722 5.36510 5.38803 5.40841 5.74551 5.92867 6.17164 6.69085 6.70786 7.03592 8.70856 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002309 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.017656 B =12126.166728 C =13241.214976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.454 3.546 4 O -0.497 6.497 5 C -0.065 4.065 6 H 0.125 0.875 7 C -0.101 4.101 8 C -0.111 4.111 9 C 0.038 3.962 10 N -0.523 5.523 11 C 0.062 3.938 12 C -0.082 4.082 13 C -0.090 4.090 14 S -0.184 6.184 15 C -0.540 4.540 16 H 0.069 0.931 17 C 0.016 3.984 18 N -0.905 5.905 19 Si 0.994 3.006 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.271 1.271 23 C 0.113 3.887 24 H 0.085 0.915 25 C 0.455 3.545 26 O -0.516 6.516 27 O -0.333 6.333 28 C 0.026 3.974 29 H 0.058 0.942 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.272 0.728 45 H 0.059 0.941 46 H 0.126 0.874 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.865 -17.630 1.193 31.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.296 3.704 4 O -0.384 6.384 5 C -0.084 4.084 6 H 0.142 0.858 7 C -0.139 4.139 8 C -0.149 4.149 9 C -0.089 4.089 10 N -0.249 5.249 11 C -0.067 4.067 12 C -0.120 4.120 13 C -0.239 4.239 14 S 0.044 5.956 15 C -0.688 4.688 16 H 0.087 0.913 17 C -0.189 4.189 18 N -0.542 5.542 19 Si 0.816 3.184 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.196 1.196 23 C 0.003 3.997 24 H 0.103 0.897 25 C 0.298 3.702 26 O -0.404 6.404 27 O -0.247 6.247 28 C -0.068 4.068 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.144 0.856 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.822 -18.358 0.801 30.883 hybrid contribution -0.925 2.991 -0.345 3.149 sum -25.747 -15.368 0.456 29.988 Atomic orbital electron populations 1.23536 0.74678 1.05628 1.02492 1.86476 1.24898 1.32168 1.83842 1.23633 0.91839 0.81956 0.72975 1.90808 1.67100 1.36266 1.44207 1.20967 0.87600 0.94323 1.05532 0.85756 1.21627 0.96325 1.02281 0.93618 1.21647 0.94505 0.94141 1.04605 1.22531 1.01408 0.96091 0.88821 1.61723 1.04677 1.18118 1.40400 1.22176 0.95122 0.87899 1.01542 1.21274 0.94142 0.93592 1.03004 1.23144 0.97984 1.00451 1.02360 1.84508 1.05653 1.13422 1.91988 1.23063 0.97622 0.92949 1.55132 0.91262 1.26054 0.94575 1.04392 0.93927 1.70143 1.00866 1.37501 1.45654 0.84973 0.78507 0.76511 0.78409 1.18966 1.19401 1.19617 1.20986 0.89736 0.95349 0.93621 0.89713 1.23786 0.80693 0.76190 0.89562 1.90667 1.58098 1.52913 1.38752 1.86807 1.27786 1.69025 1.41118 1.23480 1.02028 0.96897 0.84354 0.92307 0.85106 0.91741 0.90479 0.87417 0.87883 0.90304 0.88973 0.93481 0.90968 0.94562 0.90013 0.91189 0.92803 0.92059 0.91883 0.92189 0.85614 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.32 10.50 -51.44 -0.54 -5.86 16 3 C 0.45 8.42 6.98 71.24 0.50 8.92 16 4 O -0.50 -11.66 12.42 29.76 0.37 -11.29 16 5 C -0.06 -1.11 2.31 -11.49 -0.03 -1.13 16 6 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 7 C -0.10 -1.16 5.22 30.67 0.16 -1.00 16 8 C -0.11 -1.42 6.09 30.64 0.19 -1.23 16 9 C 0.04 0.73 4.85 86.32 0.42 1.14 16 10 N -0.52 -12.88 4.40 -875.49 -3.86 -16.74 16 11 C 0.06 1.84 4.57 86.30 0.39 2.23 16 12 C -0.08 -2.74 4.47 30.59 0.14 -2.60 16 13 C -0.09 -3.81 5.67 71.98 0.41 -3.40 16 14 S -0.18 -9.99 21.44 -56.49 -1.21 -11.20 16 15 C -0.54 -31.95 9.50 67.95 0.65 -31.30 16 16 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16 17 C 0.02 0.90 5.49 84.86 0.47 1.37 16 18 N -0.91 -55.09 13.22 21.65 0.29 -54.81 16 19 Si 0.99 44.79 29.55 68.60 2.03 46.82 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 C 0.11 2.57 1.51 44.19 0.07 2.64 16 24 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 25 C 0.46 12.61 6.08 71.24 0.43 13.04 16 26 O -0.52 -17.18 14.27 21.97 0.31 -16.87 16 27 O -0.33 -8.58 7.37 -43.61 -0.32 -8.91 16 28 C 0.03 0.52 10.56 113.37 1.20 1.71 16 29 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.13 0.45 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.96 5.81 -2.38 -0.01 1.94 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 2.49 5.98 -2.39 -0.01 2.47 16 39 H 0.04 1.04 8.08 -2.38 -0.02 1.02 16 40 H 0.08 2.55 6.21 -2.39 -0.01 2.53 16 41 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 42 H 0.05 2.34 8.14 -2.40 -0.02 2.32 16 43 H 0.06 2.54 8.14 -2.40 -0.02 2.52 16 44 H 0.27 15.28 8.31 -92.72 -0.77 14.51 16 45 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 46 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 Total: -1.00 -76.11 390.71 4.20 -71.91 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.95 Total: 15.06 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 6.18 Total: -8.13 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -3.57 Total: -71.54 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.18 Total: -42.92 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -9.99 SS G_CDS: -1.21 Total: -11.20 kcal Total: -76.11 4.20 -71.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441665751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.382 kcal (2) G-P(sol) polarization free energy of solvation -76.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds