Wall clock time and date at job start Wed Apr 1 2020 03:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00052 * 2 1 4 4 O 1.20828 * 119.99657 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00210 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47193 * 180.02562 * 5 3 2 7 7 C 1.53045 * 109.45836 * 175.00098 * 6 5 3 8 8 C 1.53196 * 109.30939 * 181.38662 * 7 6 5 9 9 N 1.46925 * 108.77264 * 305.36095 * 8 7 6 10 10 S 1.65600 * 120.62843 * 233.58802 * 9 8 7 11 11 O 1.42098 * 104.27848 * 333.92866 * 10 9 8 12 12 O 1.42101 * 104.27737 * 206.07284 * 10 9 8 13 13 C 1.81409 * 104.44895 * 90.00213 * 10 9 8 14 14 C 1.52999 * 109.46814 * 187.90614 * 13 10 9 15 15 C 1.50701 * 115.56320 * 320.21419 * 14 13 10 16 16 H 1.07995 * 120.00116 * 99.37765 * 15 14 13 17 17 C 1.37877 * 119.99833 * 279.37467 * 15 14 13 18 18 N 1.31509 * 120.00306 * 6.39618 * 17 15 14 19 19 Si 1.86804 * 119.99946 * 186.39552 * 17 15 14 20 20 H 1.48493 * 109.47250 * 89.99998 * 19 17 15 21 21 H 1.48502 * 109.46983 * 210.00435 * 19 17 15 22 22 H 1.48500 * 109.47021 * 329.99717 * 19 17 15 23 23 C 1.53003 * 117.50163 * 105.90597 * 14 13 10 24 24 C 1.53002 * 60.00103 * 107.48512 * 23 14 13 25 25 C 1.46921 * 118.74160 * 53.86354 * 9 8 7 26 26 C 1.53042 * 109.45695 * 295.06649 * 6 5 3 27 27 H 1.09004 * 109.46772 * 60.00082 * 1 2 3 28 28 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46846 * 299.99909 * 1 2 3 30 30 H 1.09005 * 109.47406 * 59.99827 * 5 3 2 31 31 H 1.09000 * 109.46810 * 300.00218 * 5 3 2 32 32 H 1.08998 * 109.45987 * 55.02322 * 6 5 3 33 33 H 1.08990 * 109.49919 * 61.42991 * 7 6 5 34 34 H 1.09000 * 109.51779 * 301.34598 * 7 6 5 35 35 H 1.08999 * 109.58497 * 185.57505 * 8 7 6 36 36 H 1.08995 * 109.70648 * 65.21679 * 8 7 6 37 37 H 1.08998 * 109.47068 * 67.90500 * 13 10 9 38 38 H 1.08991 * 109.47125 * 307.90394 * 13 10 9 39 39 H 0.97005 * 120.00523 * 174.98101 * 18 17 15 40 40 H 1.08996 * 117.49887 * 214.97936 * 23 14 13 41 41 H 1.09001 * 117.49628 * 359.97438 * 23 14 13 42 42 H 1.08999 * 117.49833 * 252.51523 * 24 23 14 43 43 H 1.09004 * 117.49673 * 107.48646 * 24 23 14 44 44 H 1.09003 * 109.58534 * 65.92410 * 25 9 8 45 45 H 1.08997 * 109.59183 * 186.35167 * 25 9 8 46 46 H 1.09003 * 109.49506 * 298.56539 * 26 6 5 47 47 H 1.08998 * 109.49870 * 58.62736 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5233 2.8234 0.1253 8 6 5.9510 4.2940 0.1606 9 7 5.4056 4.9735 -1.0224 10 16 6.3977 5.8265 -2.0376 11 8 7.4876 6.2187 -1.2146 12 8 5.5430 6.7940 -2.6316 13 6 6.9366 4.6104 -3.2711 14 6 8.0186 5.2292 -4.1583 15 6 7.7980 6.6690 -4.5445 16 1 8.3098 7.4559 -4.0105 17 6 6.9427 6.9818 -5.5798 18 7 6.2242 6.0378 -6.1472 19 14 6.8045 8.7466 -6.1763 20 1 7.7974 8.9839 -7.2546 21 1 5.4363 8.9857 -6.7018 22 1 7.0696 9.6732 -5.0466 23 6 9.4613 4.7701 -3.9374 24 6 8.6973 4.3187 -5.1838 25 6 3.9625 4.8871 -1.2842 26 6 3.5579 3.4052 -1.3063 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9558 0.7810 -0.8908 31 1 3.9564 0.7806 0.8891 32 1 3.5385 3.2568 0.8428 33 1 5.9854 2.3305 -0.7299 34 1 5.8400 2.3303 1.0444 35 1 7.0390 4.3585 0.1499 36 1 5.5657 4.7672 1.0638 37 1 6.0866 4.3159 -3.8865 38 1 7.3397 3.7334 -2.7646 39 1 5.5697 6.2677 -6.8253 40 1 10.2508 5.5096 -4.0713 41 1 9.6397 4.0276 -3.1596 42 1 8.3729 3.2790 -5.2261 43 1 8.9842 4.7613 -6.1377 44 1 3.4165 5.4060 -0.4964 45 1 3.7380 5.3429 -2.2485 46 1 4.0386 2.9068 -2.1481 47 1 2.4754 3.3257 -1.4064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451100733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:48 Heat of formation + Delta-G solvation = -141.814649 kcal Electronic energy + Delta-G solvation = -29867.679467 eV Core-core repulsion = 25757.312727 eV Total energy + Delta-G solvation = -4110.366740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82295 -38.57644 -36.71143 -36.66855 -36.10524 -34.85791 -33.73893 -32.04502 -30.94557 -29.43102 -28.11319 -27.36058 -25.45525 -23.53983 -23.23048 -21.20440 -21.07642 -20.22962 -19.32774 -18.26440 -17.73562 -16.98255 -16.81189 -16.71399 -16.35596 -15.49922 -15.06400 -14.71290 -14.61131 -14.25650 -14.10152 -13.99326 -13.87831 -13.60574 -13.26639 -13.07298 -13.01895 -12.35828 -12.20367 -12.18315 -12.05524 -11.79044 -11.41444 -11.24387 -11.13772 -11.07333 -10.99571 -10.96054 -10.90685 -10.85914 -10.72076 -10.51080 -10.34874 -10.31704 -10.19016 -10.06734 -9.64125 -8.95218 -8.65307 -8.54192 -8.06343 -6.14519 -4.29244 1.23102 1.98420 2.46780 3.33424 3.40221 3.47372 3.54890 4.38959 4.41948 4.54487 4.60267 4.80464 4.82155 4.86453 4.88534 4.98324 5.13204 5.15107 5.17321 5.24848 5.27696 5.33412 5.36021 5.46191 5.47045 5.71518 5.77297 5.81613 5.90019 5.93825 6.00755 6.06352 6.11855 6.24475 6.31409 6.36095 6.38845 6.50791 6.64765 6.70715 6.94973 7.02935 7.20455 7.38234 7.52307 7.81105 8.21413 8.80415 9.48286 10.93252 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.003196 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.207139 B = 8757.964730 C = 9086.890284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.500 6.500 5 C -0.111 4.111 6 C -0.074 4.074 7 C -0.131 4.131 8 C 0.123 3.877 9 N -1.015 6.015 10 S 2.624 3.376 11 O -0.974 6.974 12 O -0.941 6.941 13 C -0.558 4.558 14 C 0.054 3.946 15 C -0.546 4.546 16 H 0.070 0.930 17 C 0.099 3.901 18 N -0.866 5.866 19 Si 0.893 3.107 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.267 1.267 23 C -0.203 4.203 24 C -0.150 4.150 25 C 0.125 3.875 26 C -0.139 4.139 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 -14.243 12.660 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.387 6.387 5 C -0.148 4.148 6 C -0.092 4.092 7 C -0.170 4.170 8 C -0.003 4.003 9 N -0.851 5.851 10 S 2.722 3.278 11 O -0.964 6.964 12 O -0.931 6.931 13 C -0.690 4.690 14 C 0.052 3.948 15 C -0.584 4.584 16 H 0.088 0.912 17 C -0.109 4.109 18 N -0.500 5.500 19 Si 0.720 3.280 20 H -0.205 1.205 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.241 4.241 24 C -0.189 4.189 25 C 0.000 4.000 26 C -0.178 4.178 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.146 0.854 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.085 0.915 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.970 -13.056 12.597 19.816 hybrid contribution -0.487 0.018 -0.713 0.863 sum -8.457 -13.038 11.884 19.564 Atomic orbital electron populations 1.23250 0.76425 1.03572 1.02614 1.86515 1.23437 1.33873 1.84265 1.23941 0.92419 0.81217 0.72245 1.90666 1.67241 1.36102 1.44688 1.21564 0.87115 1.00217 1.05929 1.20972 0.95903 0.92357 1.00002 1.22009 0.94773 0.97533 1.02688 1.21268 0.99336 0.91251 0.88457 1.58342 1.17805 1.70552 1.38425 1.04712 0.73269 0.75848 0.74010 1.93456 1.55181 1.80925 1.66882 1.93516 1.65743 1.55963 1.77909 1.30001 1.10449 1.13923 1.14642 1.18162 0.85985 0.94451 0.96185 1.20636 1.29738 0.89366 1.18636 0.91233 1.24893 0.93992 0.97478 0.94537 1.69929 1.21443 1.32595 1.25992 0.86561 0.77482 0.84862 0.79116 1.20514 1.20747 1.19164 1.23089 0.97372 1.03237 1.00352 1.22573 1.04803 0.97725 0.93775 1.21370 0.80134 0.95821 1.02686 1.22232 1.02474 0.96316 0.96736 0.91807 0.88242 0.91952 0.87440 0.87599 0.89953 0.91002 0.90712 0.89125 0.91561 0.85447 0.88884 0.92518 0.89747 0.91275 0.91661 0.89781 0.91588 0.88802 0.91495 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.36 10.57 -39.26 -0.41 -3.77 16 3 C 0.46 4.65 7.67 36.01 0.28 4.92 16 4 O -0.50 -6.42 13.72 -18.75 -0.26 -6.68 16 5 C -0.11 -0.87 5.29 -27.88 -0.15 -1.02 16 6 C -0.07 -0.73 1.80 -90.57 -0.16 -0.89 16 7 C -0.13 -1.26 5.36 -26.61 -0.14 -1.40 16 8 C 0.12 1.58 6.31 -3.71 -0.02 1.56 16 9 N -1.02 -16.49 3.21 -113.27 -0.36 -16.86 16 10 S 2.62 56.65 4.54 -107.50 -0.49 56.16 16 11 O -0.97 -22.84 16.72 -57.54 -0.96 -23.80 16 12 O -0.94 -23.82 15.97 -57.54 -0.92 -24.73 16 13 C -0.56 -11.81 6.29 37.16 0.23 -11.57 16 14 C 0.05 1.33 1.57 -155.66 -0.24 1.08 16 15 C -0.55 -15.13 6.95 -34.44 -0.24 -15.37 16 16 H 0.07 1.98 7.82 -52.49 -0.41 1.57 16 17 C 0.10 2.74 5.42 -17.82 -0.10 2.64 16 18 N -0.87 -24.06 13.12 55.43 0.73 -23.33 16 19 Si 0.89 22.14 29.55 -169.99 -5.02 17.12 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.20 -4.40 9.88 -26.73 -0.26 -4.67 16 24 C -0.15 -3.40 9.72 -26.73 -0.26 -3.66 16 25 C 0.13 1.87 6.34 -3.49 -0.02 1.85 16 26 C -0.14 -1.71 5.13 -26.38 -0.14 -1.84 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.20 7.10 -51.93 -0.37 0.83 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.13 2.76 8.14 -51.93 -0.42 2.34 16 38 H 0.09 1.62 7.95 -51.93 -0.41 1.21 16 39 H 0.27 7.05 8.32 -40.82 -0.34 6.71 16 40 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 1.55 7.09 -51.93 -0.37 1.18 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 1.09 5.93 -51.93 -0.31 0.79 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -34.40 391.21 -9.72 -44.13 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.75 Total: 2.93 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: -0.16 Total: -27.07 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.36 Total: -40.19 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -2.55 Total: -58.98 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 56.65 SS G_CDS: -0.49 Total: 56.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.40 -9.72 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451100733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.689 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds