Wall clock time and date at job start Wed Apr 1 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00152 * 2 1 4 4 O 1.20825 * 120.00229 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99737 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47227 * 59.99377 * 5 3 2 7 7 C 1.52995 * 109.47014 * 299.99309 * 5 3 2 8 8 C 1.53000 * 109.46946 * 179.97438 * 5 3 2 9 9 N 1.46506 * 109.47128 * 181.48258 * 8 5 3 10 10 C 1.46497 * 119.99684 * 83.30340 * 9 8 5 11 11 C 1.53006 * 117.49868 * 2.25465 * 10 9 8 12 12 C 1.53001 * 117.49947 * 293.59464 * 10 9 8 13 13 S 1.65597 * 120.00138 * 263.30359 * 9 8 5 14 14 O 1.42096 * 104.27656 * 153.92706 * 13 9 8 15 15 O 1.42099 * 104.27794 * 26.07057 * 13 9 8 16 16 C 1.81400 * 104.44721 * 269.99831 * 13 9 8 17 17 C 1.53007 * 109.47153 * 172.24728 * 16 13 9 18 18 C 1.50700 * 115.54477 * 39.75601 * 17 16 13 19 19 H 1.07998 * 120.00106 * 270.39219 * 18 17 16 20 20 C 1.37882 * 120.00089 * 90.39911 * 18 17 16 21 21 N 1.31519 * 119.99394 * 353.07865 * 20 18 17 22 22 Si 1.86791 * 120.00230 * 173.08163 * 20 18 17 23 23 H 1.48498 * 109.47547 * 89.99951 * 22 20 18 24 24 H 1.48508 * 109.46930 * 209.99837 * 22 20 18 25 25 H 1.48493 * 109.47304 * 329.99643 * 22 20 18 26 26 C 1.53002 * 117.49985 * 254.05154 * 17 16 13 27 27 C 1.52995 * 117.50125 * 185.42943 * 17 16 13 28 28 H 1.08994 * 109.47673 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47098 * 300.00599 * 1 2 3 30 30 H 1.09003 * 109.46974 * 60.00203 * 1 2 3 31 31 H 1.08995 * 109.47150 * 181.96813 * 7 5 3 32 32 H 1.08998 * 109.47724 * 301.97236 * 7 5 3 33 33 H 1.09003 * 109.47162 * 61.96966 * 7 5 3 34 34 H 1.09004 * 109.46908 * 61.49082 * 8 5 3 35 35 H 1.08994 * 109.47302 * 301.48532 * 8 5 3 36 36 H 1.08997 * 115.55440 * 147.92477 * 10 9 8 37 37 H 1.09000 * 117.49958 * 0.02562 * 11 10 9 38 38 H 1.08998 * 117.49493 * 145.02486 * 11 10 9 39 39 H 1.08995 * 117.50349 * 214.97808 * 12 10 9 40 40 H 1.08998 * 117.49740 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.47034 * 292.24539 * 16 13 9 42 42 H 1.08998 * 109.47392 * 52.25298 * 16 13 9 43 43 H 0.97000 * 119.99877 * 185.01869 * 21 20 18 44 44 H 1.09001 * 117.49717 * 359.97438 * 26 17 16 45 45 H 1.08998 * 117.49654 * 145.01779 * 26 17 16 46 46 H 1.09002 * 117.49834 * 214.98380 * 27 17 16 47 47 H 1.09001 * 117.49926 * 359.97209 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9557 0.7807 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 4.0002 2.7419 -0.0011 9 7 5.4628 2.8186 -0.0374 10 6 6.1700 2.7182 -1.3165 11 6 5.3228 2.5871 -2.5838 12 6 6.1043 1.3809 -2.0569 13 16 6.3166 3.0189 1.3673 14 8 7.5881 2.4489 1.0888 15 8 5.4727 2.4721 2.3713 16 6 6.4538 4.8173 1.5611 17 6 7.0591 5.1382 2.9292 18 6 8.1755 4.2294 3.3751 19 1 7.9517 3.3352 3.9378 20 6 9.4827 4.5397 3.0649 21 7 9.7467 5.5510 2.2666 22 14 10.8784 3.5237 3.7782 23 1 11.1893 2.3973 2.8618 24 1 12.0819 4.3789 3.9375 25 1 10.4736 2.9872 5.1024 26 6 6.1205 5.6859 4.0061 27 6 7.1403 6.6102 3.3381 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 5.2001 0.6684 1.2658 32 1 3.6971 1.0527 2.1382 33 1 3.8343 -0.4724 1.2309 34 1 3.6332 3.2296 0.9020 35 1 3.5883 3.2423 -0.8774 36 1 7.0967 3.2877 -1.3874 37 1 4.2392 2.5760 -2.4659 38 1 5.6923 3.0699 -3.4883 39 1 6.9876 1.0708 -2.6152 40 1 5.5353 0.5757 -1.5921 41 1 7.0950 5.2193 0.7767 42 1 5.4638 5.2673 1.4874 43 1 10.6600 5.7249 1.9900 44 1 5.0718 5.8181 3.7399 45 1 6.3103 5.3889 5.0376 46 1 8.0011 6.9214 3.9300 47 1 6.7630 7.3502 2.6323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451159716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:16 Heat of formation + Delta-G solvation = -97.156427 kcal Electronic energy + Delta-G solvation = -30482.875913 eV Core-core repulsion = 26374.445698 eV Total energy + Delta-G solvation = -4108.430215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74256 -38.52479 -36.74000 -36.69515 -36.29937 -35.03083 -34.41727 -32.06288 -31.82171 -28.22589 -27.91770 -26.58759 -25.47251 -23.77248 -22.42343 -21.45599 -21.17285 -20.23203 -19.55358 -18.67097 -17.59278 -17.19731 -16.82983 -16.51150 -16.31440 -15.89984 -15.26080 -14.77554 -14.74100 -14.48772 -14.20666 -13.87275 -13.66740 -13.38106 -13.09004 -12.78107 -12.51859 -12.37710 -12.24600 -12.05217 -11.96451 -11.77602 -11.65429 -11.40803 -11.14351 -11.02465 -11.00617 -10.97331 -10.90343 -10.81953 -10.57066 -10.51574 -10.41886 -10.30332 -10.27331 -10.06053 -9.70112 -8.97475 -8.68255 -8.51084 -8.09726 -6.16655 -4.31840 1.04879 2.08510 2.54663 3.31307 3.35677 3.39000 3.42233 3.83005 4.38399 4.52562 4.61903 4.68379 4.75300 4.84806 4.88647 4.90038 4.97454 5.01344 5.04932 5.14978 5.15954 5.21161 5.30378 5.33226 5.57058 5.66042 5.76750 5.79892 5.90643 5.91362 5.96118 6.07866 6.11901 6.21000 6.27089 6.34631 6.39961 6.54181 6.61557 6.71633 6.82058 6.97969 7.19697 7.43769 7.60450 7.76677 8.17712 8.76722 9.44807 10.90408 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.003806 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.900081 B = 7355.416289 C = 7818.390285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.508 6.508 5 C -0.107 4.107 6 H 0.113 0.887 7 C -0.139 4.139 8 C 0.137 3.863 9 N -0.984 5.984 10 C 0.093 3.907 11 C -0.188 4.188 12 C -0.195 4.195 13 S 2.619 3.381 14 O -0.935 6.935 15 O -0.961 6.961 16 C -0.561 4.561 17 C 0.048 3.952 18 C -0.542 4.542 19 H 0.069 0.931 20 C 0.095 3.905 21 N -0.867 5.867 22 Si 0.889 3.111 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.205 4.205 27 C -0.139 4.139 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.265 0.735 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.364 -7.188 -9.637 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.396 6.396 5 C -0.128 4.128 6 H 0.130 0.870 7 C -0.197 4.197 8 C 0.010 3.990 9 N -0.815 5.815 10 C -0.014 4.014 11 C -0.227 4.227 12 C -0.234 4.234 13 S 2.718 3.282 14 O -0.925 6.925 15 O -0.952 6.952 16 C -0.694 4.694 17 C 0.046 3.954 18 C -0.579 4.579 19 H 0.087 0.913 20 C -0.112 4.112 21 N -0.501 5.501 22 Si 0.715 3.285 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.193 1.193 26 C -0.242 4.242 27 C -0.177 4.177 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.123 -7.448 -9.137 17.640 hybrid contribution 0.378 0.319 -0.111 0.507 sum -12.745 -7.129 -9.248 17.286 Atomic orbital electron populations 1.23265 0.76545 1.03597 1.02558 1.86522 1.23246 1.33540 1.84034 1.23759 0.91800 0.81274 0.71693 1.90661 1.67244 1.36257 1.45394 1.21719 0.86845 1.00641 1.03561 0.86962 1.21914 1.02451 0.99721 0.95579 1.21053 0.79956 0.93300 1.04651 1.57893 1.13981 1.87699 1.21959 1.21372 0.97405 1.00680 0.81915 1.23306 0.99047 1.02893 0.97420 1.23487 1.03002 0.92627 1.04307 1.04986 0.73139 0.78343 0.71732 1.93541 1.40585 1.75549 1.82843 1.93526 1.68015 1.76591 1.57046 1.30039 1.06689 1.23889 1.08737 1.18178 0.95404 0.95474 0.86383 1.20579 0.89946 1.08848 1.38538 0.91336 1.24916 0.98794 0.93946 0.93542 1.69976 1.20525 1.27703 1.31865 0.86612 0.81181 0.80514 0.80186 1.19569 1.20940 1.19341 1.23158 0.94265 1.07820 0.98978 1.22482 0.99416 0.93392 1.02447 0.88180 0.91804 0.91981 0.91157 0.89963 0.91985 0.88757 0.89499 0.84704 0.88411 0.87977 0.87979 0.88432 0.85726 0.88503 0.92550 0.91344 0.89686 0.89435 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.07 10.49 -39.25 -0.41 -4.49 16 3 C 0.47 6.13 7.26 36.01 0.26 6.40 16 4 O -0.51 -7.55 15.73 -18.75 -0.29 -7.85 16 5 C -0.11 -1.37 2.83 -91.77 -0.26 -1.63 16 6 H 0.11 1.24 5.32 -51.93 -0.28 0.96 16 7 C -0.14 -2.02 7.54 37.16 0.28 -1.74 16 8 C 0.14 1.88 3.64 -4.04 -0.01 1.87 16 9 N -0.98 -15.17 2.65 -107.30 -0.28 -15.45 16 10 C 0.09 1.27 5.92 -67.93 -0.40 0.87 16 11 C -0.19 -1.92 9.59 -26.69 -0.26 -2.18 16 12 C -0.20 -2.24 9.90 -26.69 -0.26 -2.50 16 13 S 2.62 53.39 3.75 -107.50 -0.40 52.99 16 14 O -0.94 -22.35 16.49 -57.54 -0.95 -23.30 16 15 O -0.96 -20.52 13.29 -57.54 -0.76 -21.29 16 16 C -0.56 -11.75 6.29 37.16 0.23 -11.52 16 17 C 0.05 1.16 1.74 -155.66 -0.27 0.89 16 18 C -0.54 -14.80 6.99 -34.44 -0.24 -15.04 16 19 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 20 C 0.10 2.61 5.36 -17.82 -0.10 2.51 16 21 N -0.87 -23.88 12.70 55.43 0.70 -23.18 16 22 Si 0.89 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 26 C -0.20 -4.48 9.88 -26.73 -0.26 -4.74 16 27 C -0.14 -3.19 9.16 -26.74 -0.24 -3.43 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.07 1.15 5.78 -51.93 -0.30 0.85 16 32 H 0.08 1.30 7.30 -51.93 -0.38 0.92 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.37 7.53 -51.93 -0.39 0.98 16 35 H 0.09 1.03 6.33 -51.93 -0.33 0.70 16 36 H 0.14 1.86 8.12 -51.93 -0.42 1.44 16 37 H 0.10 0.95 6.24 -51.93 -0.32 0.62 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.09 5.95 -51.93 -0.31 0.78 16 41 H 0.12 2.63 8.14 -51.93 -0.42 2.21 16 42 H 0.10 1.71 7.95 -51.92 -0.41 1.30 16 43 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 44 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 45 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 46 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 47 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -32.58 388.77 -9.38 -41.96 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.34 Total: 7.08 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: -0.47 Total: -28.90 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.42 Total: -38.63 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -2.42 Total: -56.92 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.40 Total: 52.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.58 -9.38 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451159716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.197 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds