Wall clock time and date at job start Wed Apr 1 2020 03:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00152 * 2 1 4 4 O 1.20825 * 120.00229 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99737 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47227 * 59.99377 * 5 3 2 7 7 C 1.52995 * 109.47014 * 299.99309 * 5 3 2 8 8 C 1.53000 * 109.46946 * 179.97438 * 5 3 2 9 9 N 1.46506 * 109.47128 * 181.48258 * 8 5 3 10 10 C 1.46497 * 119.99684 * 83.30340 * 9 8 5 11 11 C 1.53006 * 117.49868 * 2.25465 * 10 9 8 12 12 C 1.53001 * 117.49947 * 293.59464 * 10 9 8 13 13 S 1.65597 * 120.00138 * 263.30359 * 9 8 5 14 14 O 1.42096 * 104.27656 * 153.92706 * 13 9 8 15 15 O 1.42099 * 104.27794 * 26.07057 * 13 9 8 16 16 C 1.81400 * 104.44721 * 269.99831 * 13 9 8 17 17 C 1.53007 * 109.47153 * 172.24728 * 16 13 9 18 18 C 1.50700 * 115.54477 * 39.75601 * 17 16 13 19 19 H 1.07998 * 120.00106 * 270.39219 * 18 17 16 20 20 C 1.37882 * 120.00089 * 90.39911 * 18 17 16 21 21 N 1.31519 * 119.99394 * 353.07865 * 20 18 17 22 22 Si 1.86791 * 120.00230 * 173.08163 * 20 18 17 23 23 H 1.48498 * 109.47547 * 89.99951 * 22 20 18 24 24 H 1.48508 * 109.46930 * 209.99837 * 22 20 18 25 25 H 1.48493 * 109.47304 * 329.99643 * 22 20 18 26 26 C 1.53002 * 117.49985 * 254.05154 * 17 16 13 27 27 C 1.52995 * 117.50125 * 185.42943 * 17 16 13 28 28 H 1.08994 * 109.47673 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47098 * 300.00599 * 1 2 3 30 30 H 1.09003 * 109.46974 * 60.00203 * 1 2 3 31 31 H 1.08995 * 109.47150 * 181.96813 * 7 5 3 32 32 H 1.08998 * 109.47724 * 301.97236 * 7 5 3 33 33 H 1.09003 * 109.47162 * 61.96966 * 7 5 3 34 34 H 1.09004 * 109.46908 * 61.49082 * 8 5 3 35 35 H 1.08994 * 109.47302 * 301.48532 * 8 5 3 36 36 H 1.08997 * 115.55440 * 147.92477 * 10 9 8 37 37 H 1.09000 * 117.49958 * 0.02562 * 11 10 9 38 38 H 1.08998 * 117.49493 * 145.02486 * 11 10 9 39 39 H 1.08995 * 117.50349 * 214.97808 * 12 10 9 40 40 H 1.08998 * 117.49740 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.47034 * 292.24539 * 16 13 9 42 42 H 1.08998 * 109.47392 * 52.25298 * 16 13 9 43 43 H 0.97000 * 119.99877 * 185.01869 * 21 20 18 44 44 H 1.09001 * 117.49717 * 359.97438 * 26 17 16 45 45 H 1.08998 * 117.49654 * 145.01779 * 26 17 16 46 46 H 1.09002 * 117.49834 * 214.98380 * 27 17 16 47 47 H 1.09001 * 117.49926 * 359.97209 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9557 0.7807 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 4.0002 2.7419 -0.0011 9 7 5.4628 2.8186 -0.0374 10 6 6.1700 2.7182 -1.3165 11 6 5.3228 2.5871 -2.5838 12 6 6.1043 1.3809 -2.0569 13 16 6.3166 3.0189 1.3673 14 8 7.5881 2.4489 1.0888 15 8 5.4727 2.4721 2.3713 16 6 6.4538 4.8173 1.5611 17 6 7.0591 5.1382 2.9292 18 6 8.1755 4.2294 3.3751 19 1 7.9517 3.3352 3.9378 20 6 9.4827 4.5397 3.0649 21 7 9.7467 5.5510 2.2666 22 14 10.8784 3.5237 3.7782 23 1 11.1893 2.3973 2.8618 24 1 12.0819 4.3789 3.9375 25 1 10.4736 2.9872 5.1024 26 6 6.1205 5.6859 4.0061 27 6 7.1403 6.6102 3.3381 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 5.2001 0.6684 1.2658 32 1 3.6971 1.0527 2.1382 33 1 3.8343 -0.4724 1.2309 34 1 3.6332 3.2296 0.9020 35 1 3.5883 3.2423 -0.8774 36 1 7.0967 3.2877 -1.3874 37 1 4.2392 2.5760 -2.4659 38 1 5.6923 3.0699 -3.4883 39 1 6.9876 1.0708 -2.6152 40 1 5.5353 0.5757 -1.5921 41 1 7.0950 5.2193 0.7767 42 1 5.4638 5.2673 1.4874 43 1 10.6600 5.7249 1.9900 44 1 5.0718 5.8181 3.7399 45 1 6.3103 5.3889 5.0376 46 1 8.0011 6.9214 3.9300 47 1 6.7630 7.3502 2.6323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451159716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:15 Heat of formation + Delta-G solvation = -116.943949 kcal Electronic energy + Delta-G solvation = -30483.733964 eV Core-core repulsion = 26374.445698 eV Total energy + Delta-G solvation = -4109.288266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71803 -39.54644 -38.55117 -38.01976 -37.54747 -36.69786 -35.52017 -34.10407 -32.97029 -29.90108 -28.66285 -27.74678 -27.48465 -24.76804 -23.30147 -22.96618 -22.55356 -21.45536 -21.14854 -19.96574 -18.96066 -18.38819 -18.28832 -17.68857 -17.44460 -17.14983 -16.93524 -16.54727 -16.05860 -15.79616 -15.50498 -15.20333 -14.91713 -14.80522 -14.32957 -13.96325 -13.80323 -13.75331 -13.60205 -13.44160 -13.16687 -13.05475 -12.92935 -12.85742 -12.83604 -12.70864 -12.56406 -12.42995 -12.41326 -12.07681 -11.86678 -11.83953 -11.81487 -11.68743 -11.57897 -11.39459 -11.24060 -10.88563 -10.50938 -10.04170 -9.69026 -8.23797 -6.42215 -0.51093 1.09063 1.35530 1.40553 1.46350 1.62027 2.02790 2.38180 2.87222 3.04366 3.14113 3.29554 3.46205 3.51866 3.63880 3.78997 3.90725 3.94152 4.07453 4.12201 4.18993 4.19415 4.31462 4.33489 4.36232 4.56462 4.58204 4.63827 4.65404 4.72975 4.79773 4.82850 4.87956 4.88407 4.97217 5.14408 5.17618 5.23784 5.28240 5.30299 5.39189 5.39762 5.60943 5.66170 5.67619 6.18746 6.65201 6.67408 7.35036 8.82916 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.003806 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.900081 B = 7355.416289 C = 7818.390285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.478 3.522 4 O -0.529 6.529 5 C -0.103 4.103 6 H 0.135 0.865 7 C -0.139 4.139 8 C 0.130 3.870 9 N -0.972 5.972 10 C 0.053 3.947 11 C -0.155 4.155 12 C -0.196 4.196 13 S 2.633 3.367 14 O -0.979 6.979 15 O -0.979 6.979 16 C -0.563 4.563 17 C 0.014 3.986 18 C -0.556 4.556 19 H 0.049 0.951 20 C 0.055 3.945 21 N -0.885 5.885 22 Si 0.927 3.073 23 H -0.276 1.276 24 H -0.269 1.269 25 H -0.266 1.266 26 C -0.190 4.190 27 C -0.138 4.138 28 H 0.131 0.869 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.267 0.733 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 -7.731 -11.319 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.322 3.678 4 O -0.419 6.419 5 C -0.124 4.124 6 H 0.152 0.848 7 C -0.197 4.197 8 C 0.005 3.995 9 N -0.806 5.806 10 C -0.053 4.053 11 C -0.194 4.194 12 C -0.235 4.235 13 S 2.732 3.268 14 O -0.970 6.970 15 O -0.969 6.969 16 C -0.695 4.695 17 C 0.012 3.988 18 C -0.593 4.593 19 H 0.067 0.933 20 C -0.150 4.150 21 N -0.520 5.520 22 Si 0.751 3.249 23 H -0.202 1.202 24 H -0.193 1.193 25 H -0.190 1.190 26 C -0.228 4.228 27 C -0.177 4.177 28 H 0.149 0.851 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.147 0.853 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.980 -7.994 -10.800 20.123 hybrid contribution 0.849 0.424 0.386 1.025 sum -14.131 -7.570 -10.414 19.116 Atomic orbital electron populations 1.23591 0.74619 1.05784 1.02695 1.86504 1.25104 1.32486 1.83494 1.23613 0.91608 0.81451 0.71176 1.90654 1.67655 1.37009 1.46558 1.21649 0.87217 0.99943 1.03548 0.84794 1.21849 1.00859 1.01169 0.95798 1.21246 0.78606 0.94306 1.05363 1.57318 1.14483 1.87511 1.21300 1.21599 0.98432 1.03052 0.82254 1.23421 0.99232 1.00819 0.95888 1.23599 1.03864 0.92287 1.03725 1.04247 0.72413 0.77847 0.72343 1.93475 1.43260 1.76364 1.83854 1.93500 1.67984 1.76749 1.58651 1.29978 1.08036 1.24902 1.06540 1.18324 0.96096 0.95718 0.88620 1.20725 0.91422 1.08811 1.38350 0.93328 1.25480 1.00480 0.94983 0.94017 1.70014 1.20914 1.28477 1.32575 0.86024 0.79755 0.79513 0.79575 1.20202 1.19321 1.19000 1.23220 0.95444 1.05909 0.98180 1.22414 0.99251 0.93284 1.02745 0.85052 0.92178 0.91389 0.93424 0.91810 0.89926 0.89787 0.87000 0.85826 0.87260 0.85791 0.87055 0.88132 0.86372 0.85278 0.92369 0.88332 0.90135 0.91650 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.34 10.49 -51.38 -0.54 -7.88 16 3 C 0.48 11.43 7.26 71.24 0.52 11.95 16 4 O -0.53 -14.72 15.73 21.97 0.35 -14.37 16 5 C -0.10 -2.46 2.83 -11.54 -0.03 -2.49 16 6 H 0.13 2.59 5.32 -2.39 -0.01 2.58 16 7 C -0.14 -3.95 7.54 71.98 0.54 -3.41 16 8 C 0.13 3.37 3.64 86.38 0.31 3.69 16 9 N -0.97 -29.20 2.65 -493.38 -1.31 -30.51 16 10 C 0.05 1.37 5.92 44.99 0.27 1.64 16 11 C -0.16 -2.67 9.59 30.62 0.29 -2.38 16 12 C -0.20 -4.07 9.90 30.62 0.30 -3.77 16 13 S 2.63 108.82 3.75 -56.49 -0.21 108.61 16 14 O -0.98 -48.42 16.49 -127.65 -2.11 -50.52 16 15 O -0.98 -42.56 13.29 -127.65 -1.70 -44.25 16 16 C -0.56 -23.47 6.29 71.98 0.45 -23.02 16 17 C 0.01 0.70 1.74 -52.93 -0.09 0.61 16 18 C -0.56 -31.10 6.99 25.60 0.18 -30.92 16 19 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 20 C 0.06 3.09 5.36 84.66 0.45 3.54 16 21 N -0.88 -49.56 12.70 21.45 0.27 -49.28 16 22 Si 0.93 44.79 29.55 68.60 2.03 46.82 16 23 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 26 C -0.19 -8.17 9.88 30.59 0.30 -7.87 16 27 C -0.14 -6.32 9.16 30.59 0.28 -6.04 16 28 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 30 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 31 H 0.05 1.57 5.78 -2.39 -0.01 1.56 16 32 H 0.06 2.02 7.30 -2.39 -0.02 2.01 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.36 7.53 -2.39 -0.02 2.34 16 35 H 0.11 2.34 6.33 -2.39 -0.02 2.32 16 36 H 0.12 3.44 8.12 -2.39 -0.02 3.42 16 37 H 0.11 1.66 6.24 -2.39 -0.01 1.65 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.10 2.02 5.95 -2.39 -0.01 2.00 16 41 H 0.12 5.03 8.14 -2.39 -0.02 5.02 16 42 H 0.13 4.38 7.95 -2.39 -0.02 4.36 16 43 H 0.27 14.19 8.32 -92.71 -0.77 13.42 16 44 H 0.10 3.59 8.08 -2.39 -0.02 3.57 16 45 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 46 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 47 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -71.75 388.77 2.73 -69.03 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.97 Total: 29.29 kcal Atomic # 6 Polarization: -61.89 SS G_CDS: 4.98 Total: -56.92 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -1.04 Total: -79.80 kcal Atomic # 8 Polarization: -113.03 SS G_CDS: -4.00 Total: -117.03 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 108.82 SS G_CDS: -0.21 Total: 108.61 kcal Total: -71.75 2.73 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451159716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.917 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds