Wall clock time and date at job start Wed Apr 1 2020 03:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99620 * 2 1 4 4 O 1.20823 * 120.00433 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99804 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46970 * 299.99211 * 5 3 2 7 7 C 1.52995 * 109.47289 * 59.99773 * 5 3 2 8 8 C 1.52994 * 109.47158 * 179.97438 * 5 3 2 9 9 N 1.46505 * 109.47529 * 178.70510 * 8 5 3 10 10 C 1.46502 * 119.99704 * 113.02436 * 9 8 5 11 11 C 1.52999 * 117.49938 * 4.27803 * 10 9 8 12 12 C 1.53002 * 117.50199 * 295.65141 * 10 9 8 13 13 S 1.65596 * 119.99725 * 293.30885 * 9 8 5 14 14 O 1.42094 * 104.28044 * 31.13622 * 13 9 8 15 15 O 1.42107 * 104.27566 * 158.99510 * 13 9 8 16 16 C 1.81401 * 104.44772 * 275.06050 * 13 9 8 17 17 C 1.53000 * 109.47197 * 184.34174 * 16 13 9 18 18 C 1.50703 * 115.54954 * 39.96185 * 17 16 13 19 19 H 1.07994 * 119.99941 * 274.36199 * 18 17 16 20 20 C 1.37876 * 119.99531 * 94.36229 * 18 17 16 21 21 N 1.31512 * 120.00127 * 4.80013 * 20 18 17 22 22 Si 1.86801 * 119.99760 * 184.80991 * 20 18 17 23 23 H 1.48507 * 109.47166 * 59.99634 * 22 20 18 24 24 H 1.48494 * 109.47295 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46969 * 299.99477 * 22 20 18 26 26 C 1.52998 * 117.49662 * 254.25478 * 17 16 13 27 27 C 1.52991 * 60.00026 * 252.51108 * 26 17 16 28 28 H 1.09002 * 109.47530 * 60.00175 * 1 2 3 29 29 H 1.09008 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47476 * 300.00079 * 1 2 3 31 31 H 1.09005 * 109.47264 * 306.21806 * 7 5 3 32 32 H 1.08990 * 109.47732 * 66.21897 * 7 5 3 33 33 H 1.08998 * 109.47077 * 186.22786 * 7 5 3 34 34 H 1.09008 * 109.47332 * 58.70540 * 8 5 3 35 35 H 1.08998 * 109.47108 * 298.70731 * 8 5 3 36 36 H 1.08998 * 115.54826 * 149.98695 * 10 9 8 37 37 H 1.08995 * 117.50316 * 0.02562 * 11 10 9 38 38 H 1.09002 * 117.49591 * 145.01736 * 11 10 9 39 39 H 1.08995 * 117.50277 * 214.98113 * 12 10 9 40 40 H 1.09000 * 117.49764 * 359.97438 * 12 10 9 41 41 H 1.08994 * 109.47608 * 304.34533 * 16 13 9 42 42 H 1.09011 * 109.46771 * 64.34353 * 16 13 9 43 43 H 0.97007 * 119.99749 * 184.99945 * 21 20 18 44 44 H 1.08995 * 117.50499 * 0.02562 * 26 17 16 45 45 H 1.09008 * 117.49685 * 145.02085 * 26 17 16 46 46 H 1.09006 * 117.49886 * 252.51170 * 27 26 17 47 47 H 1.09004 * 117.51934 * 107.48622 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7808 0.8892 7 6 4.1128 0.5816 -1.2501 8 6 4.0000 2.7421 -0.0011 9 7 5.4627 2.8190 0.0295 10 6 6.1929 3.3453 -1.1264 11 6 5.3685 3.8909 -2.2941 12 6 6.1059 2.5578 -2.4353 13 16 6.2910 2.3046 1.3680 14 8 5.4880 1.2580 1.8962 15 8 7.6050 2.0502 0.8906 16 6 6.2846 3.7361 2.4821 17 6 7.1204 3.4197 3.7240 18 6 8.3916 2.6502 3.4730 19 1 8.3688 1.5717 3.4215 20 6 9.5838 3.3231 3.3093 21 7 9.6291 4.6282 3.4655 22 14 11.1347 2.3812 2.8653 23 1 10.9359 1.6829 1.5698 24 1 12.2723 3.3282 2.7472 25 1 11.4285 1.3837 3.9254 26 6 6.3704 3.1400 5.0278 27 6 7.1319 4.4550 4.8504 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.7140 -0.4312 -1.3075 32 1 3.8133 1.1408 -2.1364 33 1 5.2007 0.5410 -1.1965 34 1 3.5914 3.2422 0.8771 35 1 3.6293 3.2302 -0.9024 36 1 7.1360 3.8425 -0.9000 37 1 4.2829 3.8588 -2.2022 38 1 5.7692 4.7476 -2.8361 39 1 6.9916 2.5373 -3.0702 40 1 5.5058 1.6479 -2.4363 41 1 6.7093 4.5984 1.9683 42 1 5.2602 3.9595 2.7808 43 1 10.4499 5.1107 3.2798 44 1 5.2816 3.1809 5.0009 45 1 6.7964 2.3990 5.7045 46 1 8.0589 4.5793 5.4103 47 1 6.5443 5.3618 4.7066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451159717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:19 Heat of formation + Delta-G solvation = -87.732440 kcal Electronic energy + Delta-G solvation = -30513.237586 eV Core-core repulsion = 26405.216026 eV Total energy + Delta-G solvation = -4108.021560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69106 -38.56139 -36.73472 -36.70974 -36.36498 -35.05543 -34.42625 -32.02371 -31.90662 -28.26906 -27.93337 -26.65412 -25.45102 -23.94992 -22.32849 -21.38194 -21.13123 -20.54224 -19.44613 -18.25810 -17.76193 -17.21880 -16.74426 -16.54314 -16.37826 -16.00204 -15.09693 -14.80804 -14.64645 -14.54109 -14.25444 -14.03060 -13.69932 -13.39761 -13.05932 -12.92541 -12.71222 -12.49055 -12.24652 -12.05912 -11.95039 -11.81752 -11.74240 -11.26312 -11.17964 -11.03466 -10.98777 -10.92535 -10.82133 -10.79097 -10.62565 -10.46205 -10.39687 -10.36557 -10.12504 -9.96731 -9.63602 -9.11379 -8.65037 -8.41314 -8.08728 -6.11989 -4.26504 0.98486 2.15217 2.57783 3.28214 3.37259 3.38946 3.51787 3.86588 4.43858 4.48784 4.62117 4.65912 4.73099 4.87328 4.92197 4.93491 4.99635 5.02197 5.05044 5.15390 5.18254 5.27880 5.33251 5.38322 5.53354 5.62601 5.69916 5.76136 5.79707 5.84700 5.94666 6.07574 6.12809 6.20627 6.25517 6.30173 6.36422 6.45881 6.61049 6.72725 6.79787 6.99348 7.21734 7.56441 7.66386 7.78961 8.17403 8.78934 9.48724 10.93748 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.004065 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.428177 B = 6886.277733 C = 7713.167472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.476 3.524 4 O -0.514 6.514 5 C -0.135 4.135 6 H 0.160 0.840 7 C -0.146 4.146 8 C 0.134 3.866 9 N -0.983 5.983 10 C 0.095 3.905 11 C -0.189 4.189 12 C -0.212 4.212 13 S 2.617 3.383 14 O -0.972 6.972 15 O -0.924 6.924 16 C -0.561 4.561 17 C 0.035 3.965 18 C -0.525 4.525 19 H 0.066 0.934 20 C 0.093 3.907 21 N -0.873 5.873 22 Si 0.887 3.113 23 H -0.262 1.262 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.211 4.211 27 C -0.126 4.126 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.263 0.737 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.515 -3.327 -10.622 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.319 3.681 4 O -0.402 6.402 5 C -0.155 4.155 6 H 0.177 0.823 7 C -0.203 4.203 8 C 0.008 3.992 9 N -0.814 5.814 10 C -0.012 4.012 11 C -0.228 4.228 12 C -0.250 4.250 13 S 2.716 3.284 14 O -0.963 6.963 15 O -0.914 6.914 16 C -0.693 4.693 17 C 0.033 3.967 18 C -0.563 4.563 19 H 0.085 0.915 20 C -0.113 4.113 21 N -0.509 5.509 22 Si 0.713 3.287 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.248 4.248 27 C -0.165 4.165 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.236 -3.737 -10.474 17.288 hybrid contribution 0.278 0.511 -0.147 0.600 sum -12.958 -3.226 -10.621 17.063 Atomic orbital electron populations 1.23260 0.76660 1.03591 1.02467 1.86532 1.23129 1.33526 1.83988 1.23749 0.91787 0.81191 0.71414 1.90642 1.67361 1.36291 1.45907 1.22176 0.87151 1.00485 1.05700 0.82330 1.21998 1.02633 1.00649 0.94977 1.21126 0.79899 0.93429 1.04790 1.57733 1.13710 1.79817 1.30174 1.21383 0.97054 1.01438 0.81278 1.23340 0.99394 0.98109 1.01961 1.23871 1.03529 0.96471 1.01177 1.05053 0.73249 0.76828 0.73304 1.93353 1.70172 1.52895 1.79842 1.93574 1.36415 1.83445 1.77960 1.30023 1.06179 1.19055 1.14076 1.18280 0.93997 1.01196 0.83244 1.20470 0.90417 0.92851 1.52513 0.91549 1.24860 0.98861 0.94866 0.92684 1.70017 1.28269 1.06970 1.45595 0.86698 0.81644 0.80015 0.80293 1.18616 1.21250 1.20036 1.23210 0.96333 1.01528 1.03720 1.22469 1.00264 0.90264 1.03520 0.92038 0.88177 0.91861 0.91125 0.92024 0.90142 0.90342 0.88559 0.84440 0.88193 0.88100 0.88273 0.87034 0.85879 0.88310 0.92681 0.91462 0.89714 0.88515 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.35 10.35 -39.25 -0.41 -4.76 16 3 C 0.48 6.50 7.26 36.01 0.26 6.76 16 4 O -0.51 -7.77 15.73 -18.75 -0.29 -8.06 16 5 C -0.13 -1.86 2.72 -91.78 -0.25 -2.11 16 6 H 0.16 2.53 5.11 -51.93 -0.27 2.27 16 7 C -0.15 -1.71 7.31 37.16 0.27 -1.44 16 8 C 0.13 1.83 4.31 -4.04 -0.02 1.81 16 9 N -0.98 -14.99 2.55 -107.30 -0.27 -15.26 16 10 C 0.10 1.31 5.94 -67.93 -0.40 0.91 16 11 C -0.19 -2.00 9.83 -26.73 -0.26 -2.27 16 12 C -0.21 -2.45 9.93 -26.73 -0.27 -2.72 16 13 S 2.62 52.07 4.89 -107.50 -0.53 51.55 16 14 O -0.97 -20.17 14.47 -57.54 -0.83 -21.00 16 15 O -0.92 -21.61 15.45 -57.54 -0.89 -22.50 16 16 C -0.56 -11.50 6.29 37.16 0.23 -11.27 16 17 C 0.04 0.85 1.91 -155.66 -0.30 0.55 16 18 C -0.53 -14.26 6.45 -34.44 -0.22 -14.48 16 19 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 20 C 0.09 2.54 5.41 -17.82 -0.10 2.44 16 21 N -0.87 -23.96 11.82 55.43 0.66 -23.31 16 22 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 23 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 C -0.21 -4.62 9.88 -26.74 -0.26 -4.89 16 27 C -0.13 -2.93 8.86 -26.74 -0.24 -3.17 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 32 H 0.06 0.62 7.16 -51.93 -0.37 0.25 16 33 H 0.08 1.02 6.30 -51.93 -0.33 0.69 16 34 H 0.08 1.05 8.07 -51.92 -0.42 0.64 16 35 H 0.10 1.14 5.16 -51.93 -0.27 0.87 16 36 H 0.14 1.97 7.96 -51.93 -0.41 1.56 16 37 H 0.10 1.00 5.75 -51.93 -0.30 0.70 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.11 1.23 3.56 -51.93 -0.19 1.05 16 41 H 0.12 2.48 8.14 -51.93 -0.42 2.06 16 42 H 0.10 1.73 7.95 -51.92 -0.41 1.32 16 43 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 44 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 45 H 0.08 1.85 8.14 -51.92 -0.42 1.42 16 46 H 0.10 2.42 7.56 -51.93 -0.39 2.03 16 47 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -32.20 384.65 -9.39 -41.59 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.11 Total: 7.82 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -0.48 Total: -28.49 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.38 Total: -38.57 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -2.42 Total: -56.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.53 Total: 51.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.20 -9.39 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451159717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.139 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds