Wall clock time and date at job start Wed Apr 1 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99620 * 2 1 4 4 O 1.20823 * 120.00433 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99804 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46970 * 299.99211 * 5 3 2 7 7 C 1.52995 * 109.47289 * 59.99773 * 5 3 2 8 8 C 1.52994 * 109.47158 * 179.97438 * 5 3 2 9 9 N 1.46505 * 109.47529 * 178.70510 * 8 5 3 10 10 C 1.46502 * 119.99704 * 113.02436 * 9 8 5 11 11 C 1.52999 * 117.49938 * 4.27803 * 10 9 8 12 12 C 1.53002 * 117.50199 * 295.65141 * 10 9 8 13 13 S 1.65596 * 119.99725 * 293.30885 * 9 8 5 14 14 O 1.42094 * 104.28044 * 31.13622 * 13 9 8 15 15 O 1.42107 * 104.27566 * 158.99510 * 13 9 8 16 16 C 1.81401 * 104.44772 * 275.06050 * 13 9 8 17 17 C 1.53000 * 109.47197 * 184.34174 * 16 13 9 18 18 C 1.50703 * 115.54954 * 39.96185 * 17 16 13 19 19 H 1.07994 * 119.99941 * 274.36199 * 18 17 16 20 20 C 1.37876 * 119.99531 * 94.36229 * 18 17 16 21 21 N 1.31512 * 120.00127 * 4.80013 * 20 18 17 22 22 Si 1.86801 * 119.99760 * 184.80991 * 20 18 17 23 23 H 1.48507 * 109.47166 * 59.99634 * 22 20 18 24 24 H 1.48494 * 109.47295 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46969 * 299.99477 * 22 20 18 26 26 C 1.52998 * 117.49662 * 254.25478 * 17 16 13 27 27 C 1.52991 * 60.00026 * 252.51108 * 26 17 16 28 28 H 1.09002 * 109.47530 * 60.00175 * 1 2 3 29 29 H 1.09008 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47476 * 300.00079 * 1 2 3 31 31 H 1.09005 * 109.47264 * 306.21806 * 7 5 3 32 32 H 1.08990 * 109.47732 * 66.21897 * 7 5 3 33 33 H 1.08998 * 109.47077 * 186.22786 * 7 5 3 34 34 H 1.09008 * 109.47332 * 58.70540 * 8 5 3 35 35 H 1.08998 * 109.47108 * 298.70731 * 8 5 3 36 36 H 1.08998 * 115.54826 * 149.98695 * 10 9 8 37 37 H 1.08995 * 117.50316 * 0.02562 * 11 10 9 38 38 H 1.09002 * 117.49591 * 145.01736 * 11 10 9 39 39 H 1.08995 * 117.50277 * 214.98113 * 12 10 9 40 40 H 1.09000 * 117.49764 * 359.97438 * 12 10 9 41 41 H 1.08994 * 109.47608 * 304.34533 * 16 13 9 42 42 H 1.09011 * 109.46771 * 64.34353 * 16 13 9 43 43 H 0.97007 * 119.99749 * 184.99945 * 21 20 18 44 44 H 1.08995 * 117.50499 * 0.02562 * 26 17 16 45 45 H 1.09008 * 117.49685 * 145.02085 * 26 17 16 46 46 H 1.09006 * 117.49886 * 252.51170 * 27 26 17 47 47 H 1.09004 * 117.51934 * 107.48622 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7808 0.8892 7 6 4.1128 0.5816 -1.2501 8 6 4.0000 2.7421 -0.0011 9 7 5.4627 2.8190 0.0295 10 6 6.1929 3.3453 -1.1264 11 6 5.3685 3.8909 -2.2941 12 6 6.1059 2.5578 -2.4353 13 16 6.2910 2.3046 1.3680 14 8 5.4880 1.2580 1.8962 15 8 7.6050 2.0502 0.8906 16 6 6.2846 3.7361 2.4821 17 6 7.1204 3.4197 3.7240 18 6 8.3916 2.6502 3.4730 19 1 8.3688 1.5717 3.4215 20 6 9.5838 3.3231 3.3093 21 7 9.6291 4.6282 3.4655 22 14 11.1347 2.3812 2.8653 23 1 10.9359 1.6829 1.5698 24 1 12.2723 3.3282 2.7472 25 1 11.4285 1.3837 3.9254 26 6 6.3704 3.1400 5.0278 27 6 7.1319 4.4550 4.8504 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.7140 -0.4312 -1.3075 32 1 3.8133 1.1408 -2.1364 33 1 5.2007 0.5410 -1.1965 34 1 3.5914 3.2422 0.8771 35 1 3.6293 3.2302 -0.9024 36 1 7.1360 3.8425 -0.9000 37 1 4.2829 3.8588 -2.2022 38 1 5.7692 4.7476 -2.8361 39 1 6.9916 2.5373 -3.0702 40 1 5.5058 1.6479 -2.4363 41 1 6.7093 4.5984 1.9683 42 1 5.2602 3.9595 2.7808 43 1 10.4499 5.1107 3.2798 44 1 5.2816 3.1809 5.0009 45 1 6.7964 2.3990 5.7045 46 1 8.0589 4.5793 5.4103 47 1 6.5443 5.3618 4.7066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451159717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:18 Heat of formation + Delta-G solvation = -107.007162 kcal Electronic energy + Delta-G solvation = -30514.073401 eV Core-core repulsion = 26405.216026 eV Total energy + Delta-G solvation = -4108.857375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70109 -39.59007 -38.55655 -38.09045 -37.54497 -36.70730 -35.49096 -34.03993 -33.04094 -29.93914 -28.69441 -27.70432 -27.45020 -24.93837 -23.22660 -22.92986 -22.50479 -21.64835 -21.22020 -19.69809 -18.80361 -18.43292 -18.34509 -17.76224 -17.42954 -17.24530 -16.85122 -16.49864 -16.12986 -15.69383 -15.51232 -15.29020 -14.99206 -14.81270 -14.33688 -14.05308 -13.90518 -13.73726 -13.64758 -13.40251 -13.16149 -13.06751 -12.92964 -12.87803 -12.85334 -12.77313 -12.61055 -12.36986 -12.12850 -12.01394 -11.86607 -11.80717 -11.78115 -11.63065 -11.51875 -11.39147 -11.13848 -10.98837 -10.41459 -10.01566 -9.67082 -8.18698 -6.35760 -0.54583 1.11286 1.38316 1.41911 1.52888 1.59777 1.99692 2.43181 2.87643 3.06603 3.07973 3.28482 3.45535 3.56529 3.63761 3.84141 3.91628 3.96610 4.06096 4.14169 4.20867 4.29650 4.32821 4.35324 4.36252 4.55412 4.57979 4.60851 4.65754 4.72409 4.77998 4.83001 4.86969 4.98313 5.04523 5.10729 5.15672 5.19271 5.28165 5.33685 5.40040 5.42366 5.66487 5.67909 5.70951 6.19250 6.66526 6.70565 7.39674 8.86547 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.004065 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.428177 B = 6886.277733 C = 7713.167472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.481 3.519 4 O -0.531 6.531 5 C -0.138 4.138 6 H 0.136 0.864 7 C -0.144 4.144 8 C 0.128 3.872 9 N -0.970 5.970 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.210 4.210 13 S 2.630 3.370 14 O -0.986 6.986 15 O -0.967 6.967 16 C -0.563 4.563 17 C 0.004 3.996 18 C -0.537 4.537 19 H 0.047 0.953 20 C 0.055 3.945 21 N -0.891 5.891 22 Si 0.924 3.076 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.269 1.269 26 C -0.197 4.197 27 C -0.127 4.127 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.265 0.735 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.469 -3.184 -12.136 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.324 3.676 4 O -0.420 6.420 5 C -0.159 4.159 6 H 0.153 0.847 7 C -0.201 4.201 8 C 0.003 3.997 9 N -0.804 5.804 10 C -0.050 4.050 11 C -0.198 4.198 12 C -0.249 4.249 13 S 2.729 3.271 14 O -0.977 6.977 15 O -0.957 6.957 16 C -0.695 4.695 17 C 0.002 3.998 18 C -0.575 4.575 19 H 0.066 0.934 20 C -0.148 4.148 21 N -0.527 5.527 22 Si 0.749 3.251 23 H -0.199 1.199 24 H -0.198 1.198 25 H -0.194 1.194 26 C -0.234 4.234 27 C -0.166 4.166 28 H 0.087 0.913 29 H 0.148 0.852 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.182 -3.607 -11.966 19.664 hybrid contribution 0.776 0.411 0.296 0.926 sum -14.406 -3.196 -11.670 18.813 Atomic orbital electron populations 1.23594 0.74613 1.05765 1.02741 1.86513 1.25145 1.32681 1.83512 1.23598 0.91571 0.81377 0.71014 1.90630 1.67679 1.36839 1.46890 1.22104 0.87681 1.00491 1.05620 0.84652 1.22015 1.01751 1.01470 0.94875 1.21336 0.78505 0.93775 1.06076 1.57198 1.14280 1.79741 1.29199 1.21560 0.97767 1.04015 0.81618 1.23444 0.99645 0.98078 0.98634 1.23983 1.04257 0.97369 0.99272 1.04359 0.72507 0.76555 0.73701 1.93348 1.70062 1.53583 1.80671 1.93511 1.39176 1.84182 1.78865 1.29962 1.07219 1.19426 1.12889 1.18432 0.94209 1.01959 0.85242 1.20621 0.92205 0.92300 1.52336 0.93441 1.25376 1.00801 0.95619 0.93023 1.70062 1.28760 1.07472 1.46376 0.86122 0.79951 0.79505 0.79493 1.19888 1.19776 1.19384 1.23268 0.97857 1.00376 1.01917 1.22369 0.99800 0.91432 1.02988 0.91324 0.85160 0.92061 0.90157 0.89899 0.91379 0.90187 0.86207 0.85897 0.87038 0.86175 0.87481 0.86464 0.86017 0.85272 0.92570 0.88441 0.90235 0.91057 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -8.19 10.35 -51.39 -0.53 -8.73 16 3 C 0.48 12.31 7.26 71.24 0.52 12.82 16 4 O -0.53 -14.99 15.73 21.97 0.35 -14.65 16 5 C -0.14 -3.64 2.72 -11.54 -0.03 -3.67 16 6 H 0.14 4.29 5.11 -2.39 -0.01 4.28 16 7 C -0.14 -3.14 7.31 71.98 0.53 -2.62 16 8 C 0.13 3.28 4.31 86.38 0.37 3.65 16 9 N -0.97 -28.77 2.55 -493.38 -1.26 -30.03 16 10 C 0.06 1.49 5.94 44.99 0.27 1.76 16 11 C -0.16 -2.90 9.83 30.60 0.30 -2.59 16 12 C -0.21 -4.44 9.93 30.60 0.30 -4.14 16 13 S 2.63 105.46 4.89 -56.49 -0.28 105.18 16 14 O -0.99 -41.25 14.47 -127.65 -1.85 -43.09 16 15 O -0.97 -46.64 15.45 -127.65 -1.97 -48.61 16 16 C -0.56 -22.86 6.29 71.98 0.45 -22.40 16 17 C 0.00 0.17 1.91 -52.93 -0.10 0.07 16 18 C -0.54 -29.81 6.45 25.60 0.17 -29.64 16 19 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 20 C 0.06 3.07 5.41 84.65 0.46 3.53 16 21 N -0.89 -49.55 11.82 21.45 0.25 -49.30 16 22 Si 0.92 44.98 29.54 68.60 2.03 47.00 16 23 H -0.27 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 26 C -0.20 -8.48 9.88 30.59 0.30 -8.18 16 27 C -0.13 -5.86 8.86 30.59 0.27 -5.59 16 28 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 29 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.08 1.57 7.97 -2.38 -0.02 1.55 16 32 H 0.08 1.43 7.16 -2.39 -0.02 1.41 16 33 H 0.07 1.66 6.30 -2.39 -0.02 1.65 16 34 H 0.08 2.01 8.07 -2.38 -0.02 1.99 16 35 H 0.12 2.49 5.16 -2.39 -0.01 2.47 16 36 H 0.12 3.57 7.96 -2.39 -0.02 3.55 16 37 H 0.11 1.79 5.75 -2.39 -0.01 1.77 16 38 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.12 2.34 3.56 -2.39 -0.01 2.33 16 41 H 0.12 4.92 8.14 -2.39 -0.02 4.90 16 42 H 0.13 4.31 7.95 -2.38 -0.02 4.29 16 43 H 0.27 14.07 8.32 -92.70 -0.77 13.30 16 44 H 0.10 3.57 8.08 -2.39 -0.02 3.55 16 45 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 46 H 0.07 3.63 7.56 -2.38 -0.02 3.61 16 47 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 Total: -1.00 -70.26 384.65 2.72 -67.54 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.98 Total: 30.09 kcal Atomic # 6 Polarization: -60.40 SS G_CDS: 5.00 Total: -55.40 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.00 Total: -79.33 kcal Atomic # 8 Polarization: -111.07 SS G_CDS: -4.01 Total: -115.08 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 105.46 SS G_CDS: -0.28 Total: 105.18 kcal Total: -70.26 2.72 -67.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451159717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.467 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds