Wall clock time and date at job start Wed Apr 1 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99866 * 2 1 4 4 O 1.20821 * 119.99989 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00119 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.69830 * 5.78454 * 5 3 2 7 7 C 1.52755 * 109.50782 * 245.67285 * 5 3 2 8 8 C 1.53044 * 109.38192 * 185.70340 * 7 5 3 9 9 H 1.08990 * 109.46031 * 301.22125 * 8 7 5 10 10 C 1.52998 * 109.46246 * 181.25441 * 8 7 5 11 11 C 1.53048 * 109.53512 * 61.23823 * 8 7 5 12 12 C 1.53196 * 109.31185 * 298.63357 * 11 8 7 13 13 N 1.46918 * 109.58693 * 126.13954 * 5 3 2 14 14 S 1.65604 * 120.63453 * 353.42234 * 13 5 3 15 15 O 1.42098 * 104.28018 * 202.82998 * 14 13 5 16 16 O 1.42101 * 104.27254 * 330.68630 * 14 13 5 17 17 C 1.81397 * 104.45007 * 86.75889 * 14 13 5 18 18 C 1.53003 * 109.47315 * 184.62620 * 17 14 13 19 19 C 1.50703 * 115.54682 * 40.45280 * 18 17 14 20 20 H 1.07996 * 120.00325 * 265.22268 * 19 18 17 21 21 C 1.37882 * 119.99938 * 85.22620 * 19 18 17 22 22 N 1.31511 * 120.00140 * 184.92979 * 21 19 18 23 23 Si 1.86805 * 119.99721 * 4.92830 * 21 19 18 24 24 H 1.48506 * 109.46920 * 94.74221 * 23 21 19 25 25 H 1.48502 * 109.46751 * 214.73707 * 23 21 19 26 26 H 1.48497 * 109.47318 * 334.74145 * 23 21 19 27 27 C 1.52993 * 117.49926 * 254.74620 * 18 17 14 28 28 C 1.52992 * 60.00237 * 252.50881 * 27 18 17 29 29 H 1.09009 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47405 * 300.00257 * 1 2 3 31 31 H 1.09001 * 109.47073 * 60.00807 * 1 2 3 32 32 H 1.09000 * 109.56846 * 65.66970 * 7 5 3 33 33 H 1.09009 * 109.35809 * 305.61140 * 7 5 3 34 34 H 1.08998 * 109.47130 * 299.93898 * 10 8 7 35 35 H 1.09001 * 109.46579 * 59.93429 * 10 8 7 36 36 H 1.08997 * 109.47535 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.49642 * 178.68170 * 11 8 7 38 38 H 1.08999 * 109.52586 * 58.60226 * 11 8 7 39 39 H 1.09000 * 109.58340 * 294.85025 * 12 11 8 40 40 H 1.08997 * 109.58202 * 174.42204 * 12 11 8 41 41 H 1.09005 * 109.47136 * 304.62393 * 17 14 13 42 42 H 1.08997 * 109.47547 * 64.62142 * 17 14 13 43 43 H 0.97000 * 120.00063 * 180.02562 * 22 21 19 44 44 H 1.09004 * 117.49752 * 0.02562 * 27 18 17 45 45 H 1.09002 * 117.49866 * 145.01692 * 27 18 17 46 46 H 1.09001 * 117.50261 * 252.51172 * 28 27 18 47 47 H 1.08996 * 117.52027 * 107.47969 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9867 0.2745 -0.1025 7 6 4.0441 1.8943 1.3127 8 6 5.5589 2.1042 1.2532 9 1 6.0516 1.1475 1.0807 10 6 6.0440 2.6955 2.5783 11 6 5.8979 3.0655 0.1116 12 6 5.4419 2.4547 -1.2173 13 7 4.0158 2.1157 -1.1172 14 16 2.9347 2.6765 -2.2393 15 8 3.7287 2.9476 -3.3862 16 8 1.9166 1.6856 -2.2707 17 6 2.3002 4.2187 -1.5253 18 6 1.1969 4.7808 -2.4240 19 6 0.2456 3.7632 -2.9991 20 1 0.4205 3.3566 -3.9842 21 6 -0.8481 3.3511 -2.2675 22 7 -1.6237 2.3936 -2.7269 23 14 -1.2280 4.1530 -0.6237 24 1 -2.2118 5.2476 -0.8225 25 1 -1.7953 3.1398 0.3019 26 1 0.0208 4.7092 -0.0438 27 6 1.5403 5.9953 -3.2887 28 6 0.6298 6.1569 -2.0698 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.8014 1.2281 2.1405 33 1 3.5493 2.8543 1.4604 34 1 5.5518 3.6527 2.7509 35 1 5.8026 2.0110 3.3916 36 1 7.1229 2.8447 2.5364 37 1 6.9747 3.2329 0.0846 38 1 5.3861 4.0146 0.2703 39 1 6.0185 1.5525 -1.4217 40 1 5.5906 3.1758 -2.0210 41 1 1.8947 4.0199 -0.5332 42 1 3.1105 4.9436 -1.4481 43 1 -2.3933 2.1040 -2.2124 44 1 2.5524 6.3937 -3.2177 45 1 1.0783 6.0585 -4.2739 46 1 -0.4312 6.3265 -2.2531 47 1 1.0425 6.6617 -1.1964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451410911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:23 Heat of formation + Delta-G solvation = -113.955023 kcal Electronic energy + Delta-G solvation = -32348.637901 eV Core-core repulsion = 28239.479245 eV Total energy + Delta-G solvation = -4109.158656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44189 -38.49051 -37.00309 -36.46312 -35.67863 -34.96662 -33.80469 -32.01376 -31.64789 -28.34208 -27.97497 -27.26375 -25.36796 -24.25459 -23.05045 -21.66091 -20.83917 -20.36286 -19.14789 -18.35144 -17.49192 -17.12246 -16.52585 -16.23638 -15.71662 -15.32149 -15.20753 -14.66229 -14.49253 -14.31993 -14.21924 -14.06083 -13.76411 -13.49352 -13.04309 -12.81911 -12.63149 -12.47868 -12.23103 -12.17616 -11.95689 -11.71296 -11.49731 -11.35262 -11.20616 -11.15411 -10.98018 -10.91832 -10.84807 -10.70819 -10.48671 -10.39893 -10.29857 -10.11716 -9.91448 -9.78782 -9.49079 -9.10142 -8.87008 -8.47738 -8.27753 -6.01516 -4.11084 1.06459 2.46604 2.94682 3.38032 3.45698 3.48918 3.59481 4.50164 4.53575 4.56442 4.59208 4.71936 4.84052 4.90138 5.02641 5.07646 5.14575 5.18770 5.26763 5.39693 5.42338 5.49192 5.55640 5.59179 5.67639 5.69367 5.73072 5.83289 5.85035 5.93129 5.93629 5.97881 6.09524 6.13797 6.20727 6.23932 6.37906 6.46344 6.48537 6.65719 6.73542 6.91982 7.08380 7.14597 7.72389 8.18017 8.47647 8.97741 9.62627 11.08869 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.006528 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.013914 B = 4288.165361 C = 5062.029982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.346 6.346 3 C 0.463 3.537 4 O -0.489 6.489 5 C 0.170 3.830 6 H 0.103 0.897 7 C -0.123 4.123 8 C -0.086 4.086 9 H 0.076 0.924 10 C -0.146 4.146 11 C -0.135 4.135 12 C 0.122 3.878 13 N -1.004 6.004 14 S 2.616 3.384 15 O -0.974 6.974 16 O -0.910 6.910 17 C -0.574 4.574 18 C 0.015 3.985 19 C -0.522 4.522 20 H 0.082 0.918 21 C 0.116 3.884 22 N -0.875 5.875 23 Si 0.884 3.116 24 H -0.293 1.293 25 H -0.295 1.295 26 H -0.250 1.250 27 C -0.182 4.182 28 C -0.185 4.185 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.148 0.852 42 H 0.093 0.907 43 H 0.262 0.738 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.276 -1.860 11.427 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.305 3.695 4 O -0.377 6.377 5 C 0.062 3.938 6 H 0.120 0.880 7 C -0.162 4.162 8 C -0.105 4.105 9 H 0.095 0.905 10 C -0.203 4.203 11 C -0.174 4.174 12 C -0.003 4.003 13 N -0.842 5.842 14 S 2.714 3.286 15 O -0.965 6.965 16 O -0.900 6.900 17 C -0.706 4.706 18 C 0.012 3.988 19 C -0.559 4.559 20 H 0.100 0.900 21 C -0.091 4.091 22 N -0.510 5.510 23 Si 0.713 3.287 24 H -0.220 1.220 25 H -0.222 1.222 26 H -0.174 1.174 27 C -0.220 4.220 28 C -0.224 4.224 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.166 0.834 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.699 -2.186 10.617 17.469 hybrid contribution -0.579 0.975 1.449 1.840 sum 13.120 -1.211 12.066 17.866 Atomic orbital electron populations 1.23361 0.75333 1.02987 1.03995 1.86282 1.24165 1.32176 1.83503 1.23033 0.90847 0.82837 0.72766 1.90665 1.66724 1.35459 1.44817 1.20167 0.87989 0.96951 0.88678 0.87958 1.21930 0.96691 1.02553 0.94997 1.21040 0.94569 0.99558 0.95288 0.90549 1.21819 1.00995 1.01099 0.96436 1.22067 1.01487 0.99283 0.94520 1.21409 0.80033 1.00876 0.97947 1.58404 1.19500 1.64367 1.41885 1.05058 0.72578 0.77743 0.73210 1.93469 1.69527 1.87080 1.46421 1.93578 1.56612 1.55772 1.84010 1.30425 1.07821 1.18987 1.13362 1.18788 0.95256 0.88436 0.96290 1.20243 1.08754 1.22609 1.04317 0.90018 1.24715 0.94876 0.92936 0.96537 1.69938 1.15618 1.26807 1.38594 0.86784 0.78806 0.78402 0.84748 1.22005 1.22234 1.17409 1.22997 0.98486 1.04676 0.95795 1.22914 0.98847 1.02593 0.98044 0.88927 0.92922 0.88930 0.90138 0.90064 0.92532 0.92573 0.92465 0.90497 0.91150 0.91004 0.88626 0.83416 0.88816 0.92847 0.90731 0.89013 0.89345 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.56 101.05 1.07 1.74 16 2 O -0.35 -6.39 10.56 -42.55 -0.45 -6.84 16 3 C 0.46 8.64 4.14 36.01 0.15 8.79 16 4 O -0.49 -10.51 9.87 -26.48 -0.26 -10.77 16 5 C 0.17 2.46 3.30 -68.98 -0.23 2.23 16 6 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 7 C -0.12 -1.36 4.60 -26.83 -0.12 -1.49 16 8 C -0.09 -0.75 2.68 -90.57 -0.24 -1.00 16 9 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 10 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 11 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 12 C 0.12 1.49 6.33 -3.71 -0.02 1.47 16 13 N -1.00 -16.07 3.22 -107.94 -0.35 -16.42 16 14 S 2.62 56.80 4.24 -107.50 -0.46 56.35 16 15 O -0.97 -22.70 16.62 -57.54 -0.96 -23.66 16 16 O -0.91 -23.03 12.44 -68.28 -0.85 -23.88 16 17 C -0.57 -12.25 5.60 37.16 0.21 -12.04 16 18 C 0.01 0.36 1.07 -155.66 -0.17 0.20 16 19 C -0.52 -14.95 7.00 -34.44 -0.24 -15.19 16 20 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 21 C 0.12 3.35 5.47 -17.82 -0.10 3.25 16 22 N -0.88 -26.51 13.96 55.43 0.77 -25.73 16 23 Si 0.88 22.85 23.58 -169.99 -4.01 18.84 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 26 H -0.25 -6.16 5.27 56.52 0.30 -5.86 16 27 C -0.18 -3.91 9.88 -26.74 -0.26 -4.17 16 28 C -0.19 -4.09 7.30 -26.74 -0.20 -4.28 16 29 H 0.09 1.34 8.14 -51.92 -0.42 0.91 16 30 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.09 2.12 8.13 -51.93 -0.42 1.70 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.00 8.06 -51.92 -0.42 0.58 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.22 7.01 -51.93 -0.36 0.86 16 41 H 0.15 3.21 4.10 -51.92 -0.21 2.99 16 42 H 0.09 1.67 7.95 -51.93 -0.41 1.25 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 45 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 46 H 0.09 2.02 7.08 -51.93 -0.37 1.65 16 47 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -35.40 369.08 -8.73 -44.13 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.78 Total: 5.05 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 0.04 Total: -22.63 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.43 Total: -42.15 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -2.52 Total: -65.14 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.01 Total: 18.84 kcal Atomic # 16 Polarization: 56.80 SS G_CDS: -0.46 Total: 56.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.40 -8.73 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451410911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.825 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds