Wall clock time and date at job start Wed Apr 1 2020 03:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99866 * 2 1 4 4 O 1.20821 * 119.99989 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00119 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.69830 * 5.78454 * 5 3 2 7 7 C 1.52755 * 109.50782 * 245.67285 * 5 3 2 8 8 C 1.53044 * 109.38192 * 185.70340 * 7 5 3 9 9 H 1.08990 * 109.46031 * 301.22125 * 8 7 5 10 10 C 1.52998 * 109.46246 * 181.25441 * 8 7 5 11 11 C 1.53048 * 109.53512 * 61.23823 * 8 7 5 12 12 C 1.53196 * 109.31185 * 298.63357 * 11 8 7 13 13 N 1.46918 * 109.58693 * 126.13954 * 5 3 2 14 14 S 1.65604 * 120.63453 * 353.42234 * 13 5 3 15 15 O 1.42098 * 104.28018 * 202.82998 * 14 13 5 16 16 O 1.42101 * 104.27254 * 330.68630 * 14 13 5 17 17 C 1.81397 * 104.45007 * 86.75889 * 14 13 5 18 18 C 1.53003 * 109.47315 * 184.62620 * 17 14 13 19 19 C 1.50703 * 115.54682 * 40.45280 * 18 17 14 20 20 H 1.07996 * 120.00325 * 265.22268 * 19 18 17 21 21 C 1.37882 * 119.99938 * 85.22620 * 19 18 17 22 22 N 1.31511 * 120.00140 * 184.92979 * 21 19 18 23 23 Si 1.86805 * 119.99721 * 4.92830 * 21 19 18 24 24 H 1.48506 * 109.46920 * 94.74221 * 23 21 19 25 25 H 1.48502 * 109.46751 * 214.73707 * 23 21 19 26 26 H 1.48497 * 109.47318 * 334.74145 * 23 21 19 27 27 C 1.52993 * 117.49926 * 254.74620 * 18 17 14 28 28 C 1.52992 * 60.00237 * 252.50881 * 27 18 17 29 29 H 1.09009 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47405 * 300.00257 * 1 2 3 31 31 H 1.09001 * 109.47073 * 60.00807 * 1 2 3 32 32 H 1.09000 * 109.56846 * 65.66970 * 7 5 3 33 33 H 1.09009 * 109.35809 * 305.61140 * 7 5 3 34 34 H 1.08998 * 109.47130 * 299.93898 * 10 8 7 35 35 H 1.09001 * 109.46579 * 59.93429 * 10 8 7 36 36 H 1.08997 * 109.47535 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.49642 * 178.68170 * 11 8 7 38 38 H 1.08999 * 109.52586 * 58.60226 * 11 8 7 39 39 H 1.09000 * 109.58340 * 294.85025 * 12 11 8 40 40 H 1.08997 * 109.58202 * 174.42204 * 12 11 8 41 41 H 1.09005 * 109.47136 * 304.62393 * 17 14 13 42 42 H 1.08997 * 109.47547 * 64.62142 * 17 14 13 43 43 H 0.97000 * 120.00063 * 180.02562 * 22 21 19 44 44 H 1.09004 * 117.49752 * 0.02562 * 27 18 17 45 45 H 1.09002 * 117.49866 * 145.01692 * 27 18 17 46 46 H 1.09001 * 117.50261 * 252.51172 * 28 27 18 47 47 H 1.08996 * 117.52027 * 107.47969 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9867 0.2745 -0.1025 7 6 4.0441 1.8943 1.3127 8 6 5.5589 2.1042 1.2532 9 1 6.0516 1.1475 1.0807 10 6 6.0440 2.6955 2.5783 11 6 5.8979 3.0655 0.1116 12 6 5.4419 2.4547 -1.2173 13 7 4.0158 2.1157 -1.1172 14 16 2.9347 2.6765 -2.2393 15 8 3.7287 2.9476 -3.3862 16 8 1.9166 1.6856 -2.2707 17 6 2.3002 4.2187 -1.5253 18 6 1.1969 4.7808 -2.4240 19 6 0.2456 3.7632 -2.9991 20 1 0.4205 3.3566 -3.9842 21 6 -0.8481 3.3511 -2.2675 22 7 -1.6237 2.3936 -2.7269 23 14 -1.2280 4.1530 -0.6237 24 1 -2.2118 5.2476 -0.8225 25 1 -1.7953 3.1398 0.3019 26 1 0.0208 4.7092 -0.0438 27 6 1.5403 5.9953 -3.2887 28 6 0.6298 6.1569 -2.0698 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.8014 1.2281 2.1405 33 1 3.5493 2.8543 1.4604 34 1 5.5518 3.6527 2.7509 35 1 5.8026 2.0110 3.3916 36 1 7.1229 2.8447 2.5364 37 1 6.9747 3.2329 0.0846 38 1 5.3861 4.0146 0.2703 39 1 6.0185 1.5525 -1.4217 40 1 5.5906 3.1758 -2.0210 41 1 1.8947 4.0199 -0.5332 42 1 3.1105 4.9436 -1.4481 43 1 -2.3933 2.1040 -2.2124 44 1 2.5524 6.3937 -3.2177 45 1 1.0783 6.0585 -4.2739 46 1 -0.4312 6.3265 -2.2531 47 1 1.0425 6.6617 -1.1964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451410911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:22 Heat of formation + Delta-G solvation = -139.277914 kcal Electronic energy + Delta-G solvation = -32349.735984 eV Core-core repulsion = 28239.479245 eV Total energy + Delta-G solvation = -4110.256739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79432 -39.54052 -38.81849 -38.12140 -37.21647 -36.73513 -34.76284 -34.20899 -32.66165 -30.04325 -28.98556 -28.47516 -27.50012 -25.33572 -23.94374 -23.39406 -22.21857 -21.42852 -20.83427 -19.78618 -18.97507 -18.75004 -18.31355 -17.68010 -17.14767 -16.91834 -16.77544 -16.39128 -15.64293 -15.57607 -15.36089 -15.25553 -15.03974 -14.83713 -14.75440 -14.45184 -14.33852 -13.86837 -13.77658 -13.21226 -13.09915 -13.01026 -12.87544 -12.77291 -12.70425 -12.65436 -12.52230 -12.35394 -12.28934 -12.10846 -12.00130 -11.77884 -11.66378 -11.56276 -11.53675 -11.23534 -11.15038 -10.97794 -10.53950 -10.30227 -9.95140 -8.24811 -6.36528 -0.55501 1.06385 1.31216 1.38252 1.50920 1.65331 2.00859 2.42215 2.99034 3.11326 3.15485 3.34862 3.51813 3.65422 3.80928 3.90079 4.00817 4.09108 4.16923 4.22845 4.26846 4.29378 4.35685 4.41612 4.43963 4.64441 4.65813 4.71975 4.79599 4.79933 4.82394 4.87742 4.92188 4.99805 5.01339 5.10838 5.18178 5.24038 5.25741 5.41021 5.46605 5.57539 5.58963 5.60230 5.68193 6.22283 6.69470 6.74628 7.39521 8.90603 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.006528 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.013914 B = 4288.165361 C = 5062.029982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.347 6.347 3 C 0.452 3.548 4 O -0.520 6.520 5 C 0.171 3.829 6 H 0.128 0.872 7 C -0.119 4.119 8 C -0.081 4.081 9 H 0.094 0.906 10 C -0.143 4.143 11 C -0.130 4.130 12 C 0.110 3.890 13 N -0.998 5.998 14 S 2.616 3.384 15 O -1.002 7.002 16 O -0.960 6.960 17 C -0.567 4.567 18 C -0.024 4.024 19 C -0.519 4.519 20 H 0.027 0.973 21 C 0.072 3.928 22 N -0.921 5.921 23 Si 0.931 3.069 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.226 1.226 27 C -0.171 4.171 28 C -0.175 4.175 29 H 0.129 0.871 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.147 0.853 42 H 0.133 0.867 43 H 0.263 0.737 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.515 -0.689 14.471 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.262 6.262 3 C 0.295 3.705 4 O -0.410 6.410 5 C 0.064 3.936 6 H 0.145 0.855 7 C -0.158 4.158 8 C -0.100 4.100 9 H 0.112 0.888 10 C -0.200 4.200 11 C -0.169 4.169 12 C -0.013 4.013 13 N -0.839 5.839 14 S 2.715 3.285 15 O -0.992 6.992 16 O -0.949 6.949 17 C -0.699 4.699 18 C -0.026 4.026 19 C -0.557 4.557 20 H 0.045 0.955 21 C -0.129 4.129 22 N -0.558 5.558 23 Si 0.757 3.243 24 H -0.214 1.214 25 H -0.227 1.227 26 H -0.149 1.149 27 C -0.208 4.208 28 C -0.214 4.214 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.966 -1.004 13.644 21.795 hybrid contribution -1.528 0.545 0.412 1.674 sum 15.438 -0.459 14.056 20.883 Atomic orbital electron populations 1.23327 0.75654 1.04742 1.01699 1.86295 1.23981 1.32583 1.83376 1.24015 0.92667 0.82250 0.71522 1.90613 1.67843 1.36353 1.46162 1.20548 0.84976 0.98334 0.89761 0.85469 1.22012 0.98403 1.02070 0.93296 1.21067 0.92609 1.00424 0.95878 0.88813 1.21785 1.01797 1.00810 0.95585 1.22092 1.03189 0.98882 0.92749 1.21814 0.77672 1.02079 0.99721 1.57954 1.20260 1.64277 1.41371 1.04618 0.72402 0.77716 0.73737 1.93422 1.69885 1.87405 1.48526 1.93527 1.58875 1.57375 1.85148 1.30267 1.07932 1.19601 1.12120 1.18770 0.96315 0.88562 0.98967 1.20233 1.09780 1.23445 1.02197 0.95450 1.25376 0.94739 0.93236 0.99593 1.70054 1.16640 1.28818 1.40309 0.86024 0.79546 0.77595 0.81098 1.21363 1.22733 1.14888 1.23111 1.00290 1.02198 0.95211 1.22973 0.98576 1.00308 0.99494 0.85258 0.92129 0.94175 0.88128 0.91270 0.93143 0.91897 0.91007 0.87474 0.91615 0.88807 0.89466 0.83545 0.84840 0.92820 0.87084 0.89979 0.90611 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 10.56 113.37 1.20 2.68 16 2 O -0.35 -12.88 10.56 -48.27 -0.51 -13.39 16 3 C 0.45 16.72 4.14 71.24 0.29 17.02 16 4 O -0.52 -22.42 9.87 29.37 0.29 -22.13 16 5 C 0.17 4.59 3.30 44.08 0.15 4.74 16 6 H 0.13 2.78 8.14 -2.38 -0.02 2.76 16 7 C -0.12 -2.24 4.60 30.53 0.14 -2.10 16 8 C -0.08 -1.06 2.68 -10.76 -0.03 -1.08 16 9 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 10 C -0.14 -1.44 9.19 71.98 0.66 -0.77 16 11 C -0.13 -1.88 5.36 30.68 0.16 -1.72 16 12 C 0.11 2.37 6.33 86.36 0.55 2.91 16 13 N -1.00 -30.26 3.22 -495.42 -1.60 -31.86 16 14 S 2.62 114.24 4.24 -56.49 -0.24 114.00 16 15 O -1.00 -47.21 16.62 -127.65 -2.12 -49.33 16 16 O -0.96 -50.73 12.44 -117.38 -1.46 -52.19 16 17 C -0.57 -23.36 5.60 71.98 0.40 -22.96 16 18 C -0.02 -1.14 1.07 -52.93 -0.06 -1.20 16 19 C -0.52 -31.01 7.00 25.60 0.18 -30.83 16 20 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 21 C 0.07 4.37 5.47 84.66 0.46 4.83 16 22 N -0.92 -59.17 13.96 21.45 0.30 -58.87 16 23 Si 0.93 47.66 23.58 68.60 1.62 49.28 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 26 H -0.23 -10.58 5.27 99.48 0.52 -10.06 16 27 C -0.17 -7.03 9.88 30.59 0.30 -6.73 16 28 C -0.18 -7.31 7.30 30.59 0.22 -7.09 16 29 H 0.13 3.72 8.14 -2.38 -0.02 3.71 16 30 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 31 H 0.04 1.94 8.13 -2.39 -0.02 1.92 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.50 8.06 -2.38 -0.02 1.48 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 2.04 7.01 -2.39 -0.02 2.02 16 41 H 0.15 6.12 4.10 -2.39 -0.01 6.11 16 42 H 0.13 4.30 7.95 -2.39 -0.02 4.28 16 43 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.11 3.74 8.09 -2.39 -0.02 3.72 16 45 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 46 H 0.08 3.35 7.08 -2.39 -0.02 3.33 16 47 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 Total: -1.00 -83.59 369.08 1.68 -81.91 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.77 Total: 24.88 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 4.64 Total: -42.31 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -1.30 Total: -90.73 kcal Atomic # 8 Polarization: -133.24 SS G_CDS: -3.80 Total: -137.04 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.62 Total: 49.28 kcal Atomic # 16 Polarization: 114.24 SS G_CDS: -0.24 Total: 114.00 kcal Total: -83.59 1.68 -81.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451410911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.369 kcal (2) G-P(sol) polarization free energy of solvation -83.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds