Wall clock time and date at job start Wed Apr 1 2020 03:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34232 * 117.00034 * 2 1 4 4 O 1.20828 * 119.99561 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00525 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.45292 * 299.96688 * 5 3 2 7 7 C 1.53036 * 109.45888 * 59.92493 * 5 3 2 8 8 C 1.53191 * 109.31087 * 181.39198 * 7 5 3 9 9 N 1.46966 * 108.88683 * 305.44466 * 8 7 5 10 10 S 1.65602 * 120.65198 * 233.53664 * 9 8 7 11 11 O 1.42095 * 104.28315 * 25.88711 * 10 9 8 12 12 O 1.42100 * 104.27591 * 153.74926 * 10 9 8 13 13 C 1.81410 * 104.44674 * 269.81806 * 10 9 8 14 14 C 1.53003 * 109.46960 * 174.01646 * 13 10 9 15 15 C 1.50695 * 115.55135 * 65.27723 * 14 13 10 16 16 H 1.08008 * 120.00108 * 268.54632 * 15 14 13 17 17 C 1.37870 * 120.00305 * 88.54419 * 15 14 13 18 18 N 1.31514 * 120.00577 * 174.69811 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 354.69885 * 17 15 14 20 20 H 1.48502 * 109.47282 * 92.55251 * 19 17 15 21 21 H 1.48504 * 109.47493 * 212.55395 * 19 17 15 22 22 H 1.48501 * 109.47160 * 332.55478 * 19 17 15 23 23 C 1.52999 * 117.49833 * 279.60434 * 14 13 10 24 24 C 1.53004 * 117.49602 * 210.94420 * 14 13 10 25 25 C 1.46921 * 118.71661 * 53.35475 * 9 8 7 26 26 C 1.53035 * 109.46374 * 180.02562 * 5 3 2 27 27 H 1.09002 * 109.50071 * 58.65739 * 26 5 3 28 28 C 1.53002 * 109.52158 * 298.57858 * 26 5 3 29 29 H 1.09003 * 109.46533 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47118 * 300.00216 * 1 2 3 31 31 H 1.08997 * 109.46539 * 60.00350 * 1 2 3 32 32 H 1.08999 * 109.50262 * 301.33986 * 7 5 3 33 33 H 1.09001 * 109.49683 * 61.43875 * 7 5 3 34 34 H 1.08993 * 109.59211 * 65.15375 * 8 7 5 35 35 H 1.09002 * 109.58505 * 185.58306 * 8 7 5 36 36 H 1.08998 * 109.46946 * 294.01245 * 13 10 9 37 37 H 1.08999 * 109.47227 * 54.01416 * 13 10 9 38 38 H 0.96996 * 120.00354 * 180.02562 * 18 17 15 39 39 H 1.09008 * 117.49585 * 0.02562 * 23 14 13 40 40 H 1.08995 * 117.50006 * 145.02072 * 23 14 13 41 41 H 1.08997 * 117.49730 * 214.98066 * 24 14 13 42 42 H 1.08995 * 117.49624 * 0.02562 * 24 14 13 43 43 H 1.08998 * 109.58920 * 186.78370 * 25 9 8 44 44 H 1.09004 * 109.58590 * 66.50087 * 25 9 8 45 45 H 1.09000 * 109.47379 * 300.14906 * 28 26 5 46 46 H 1.09007 * 109.47360 * 60.14606 * 28 26 5 47 47 H 1.08998 * 109.47209 * 180.14556 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2750 -0.0006 6 1 3.9562 0.7812 0.8896 7 6 4.1129 0.5799 -1.2496 8 6 5.6438 0.6317 -1.2293 9 7 6.0705 2.0302 -1.0813 10 16 7.1370 2.7055 -2.1532 11 8 6.9582 1.9542 -3.3460 12 8 6.8429 4.0952 -2.1117 13 6 8.7699 2.3786 -1.4338 14 6 9.8573 2.8274 -2.4121 15 6 9.9178 4.3087 -2.6819 16 1 9.3607 4.7309 -3.5053 17 6 10.6843 5.1252 -1.8778 18 7 10.8211 6.3992 -2.1740 19 14 11.5287 4.4218 -0.3672 20 1 12.9044 3.9914 -0.7244 21 1 11.5945 5.4606 0.6920 22 1 10.7587 3.2542 0.1317 23 6 10.2016 1.8844 -3.5667 24 6 11.1790 2.0567 -2.4013 25 6 5.5295 2.8191 0.0339 26 6 4.0000 2.7427 0.0002 27 1 3.5909 3.2425 0.8782 28 6 3.4827 3.4292 -1.2655 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 3.7843 -0.4593 -1.2609 33 1 3.7434 1.0885 -2.1401 34 1 6.0182 0.0469 -0.3892 35 1 6.0355 0.2269 -2.1625 36 1 8.8721 2.9301 -0.4991 37 1 8.8742 1.3112 -1.2392 38 1 11.3607 6.9735 -1.6085 39 1 9.6531 0.9444 -3.6295 40 1 10.4723 2.3354 -4.5213 41 1 12.0923 2.6211 -2.5897 42 1 11.2737 1.2298 -1.6975 43 1 5.8459 3.8574 -0.0656 44 1 5.8944 2.4149 0.9782 45 1 3.8911 2.9284 -2.1433 46 1 2.3943 3.3747 -1.2896 47 1 3.7942 4.4738 -1.2654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451447163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:50 Heat of formation + Delta-G solvation = -127.091604 kcal Electronic energy + Delta-G solvation = -30243.513444 eV Core-core repulsion = 26133.785143 eV Total energy + Delta-G solvation = -4109.728301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07225 -38.77254 -37.15152 -36.67934 -36.45296 -35.18282 -33.21899 -32.18184 -31.96917 -28.59690 -28.40117 -26.98951 -25.62170 -25.19297 -23.13319 -21.74653 -21.60810 -19.71007 -19.23501 -18.34690 -17.83688 -17.41741 -16.79215 -16.62990 -16.33299 -15.70117 -15.47550 -15.06820 -14.81957 -14.49704 -14.21652 -14.03335 -13.97497 -13.80041 -13.24978 -13.01634 -12.90957 -12.66472 -12.50403 -12.36298 -12.16706 -11.88147 -11.83748 -11.43326 -11.28052 -11.26643 -11.21133 -11.12422 -10.98437 -10.94383 -10.69889 -10.66819 -10.57966 -10.39726 -10.23374 -10.10421 -9.74808 -9.18280 -8.96796 -8.68008 -8.44499 -6.18515 -4.26268 0.85740 1.97166 2.45013 3.18286 3.20599 3.30486 3.32577 4.28010 4.33130 4.40882 4.45374 4.57087 4.72127 4.79116 4.79739 4.85728 4.89806 4.95058 4.97988 5.07284 5.14086 5.20872 5.38154 5.43979 5.47707 5.52568 5.59284 5.70531 5.71173 5.79406 5.90614 5.95050 5.99986 6.00530 6.03613 6.17274 6.26224 6.26714 6.40329 6.50748 6.62328 6.73975 6.86640 7.04083 7.53020 7.57728 8.35079 8.86684 9.42456 10.92953 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.003247 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.854735 B = 8621.796340 C = 8997.226873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.499 6.499 5 C -0.073 4.073 6 H 0.110 0.890 7 C -0.126 4.126 8 C 0.120 3.880 9 N -1.011 6.011 10 S 2.611 3.389 11 O -0.965 6.965 12 O -0.934 6.934 13 C -0.577 4.577 14 C 0.001 3.999 15 C -0.510 4.510 16 H 0.087 0.913 17 C 0.089 3.911 18 N -0.882 5.882 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.257 1.257 23 C -0.177 4.177 24 C -0.185 4.185 25 C 0.121 3.879 26 C -0.084 4.084 27 H 0.089 0.911 28 C -0.161 4.161 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.267 0.733 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.124 -15.494 7.843 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.386 6.386 5 C -0.092 4.092 6 H 0.128 0.872 7 C -0.165 4.165 8 C -0.006 4.006 9 N -0.847 5.847 10 S 2.708 3.292 11 O -0.955 6.955 12 O -0.924 6.924 13 C -0.708 4.708 14 C -0.001 4.001 15 C -0.547 4.547 16 H 0.104 0.896 17 C -0.116 4.116 18 N -0.517 5.517 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.181 1.181 23 C -0.214 4.214 24 C -0.224 4.224 25 C -0.005 4.005 26 C -0.104 4.104 27 H 0.107 0.893 28 C -0.218 4.218 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.536 -14.544 7.101 22.435 hybrid contribution 0.715 -0.532 1.532 1.772 sum -14.821 -15.076 8.633 22.836 Atomic orbital electron populations 1.23253 0.76534 1.03586 1.02533 1.86516 1.23275 1.33713 1.84145 1.23899 0.92096 0.81201 0.72032 1.90633 1.67169 1.36113 1.44687 1.21117 0.86556 0.99533 1.01986 0.87170 1.21925 0.96424 1.01238 0.96877 1.21376 0.93903 0.82111 1.03173 1.58210 1.60603 1.20602 1.45328 1.05144 0.75857 0.74226 0.73990 1.93493 1.85501 1.73150 1.43366 1.93578 1.82685 1.30613 1.85483 1.30357 1.20707 1.07986 1.11750 1.18861 0.91940 0.94740 0.94609 1.20341 1.31091 0.86694 1.16584 0.89554 1.24948 0.95145 0.94463 0.97048 1.69893 1.38629 1.05012 1.38178 0.86930 0.80610 0.79197 0.83174 1.20113 1.21650 1.18098 1.23025 1.03769 1.00293 0.94348 1.22990 0.95285 1.02388 1.01728 1.21496 0.92417 0.97458 0.89091 1.21308 0.95627 0.92534 1.00964 0.89286 1.22082 1.02174 1.01142 0.96405 0.88188 0.91990 0.91893 0.89542 0.90188 0.91293 0.88209 0.85598 0.87654 0.92258 0.90025 0.88639 0.88908 0.90673 0.87707 0.91360 0.92668 0.90896 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.38 10.44 -39.26 -0.41 -3.79 16 3 C 0.46 5.04 6.97 36.01 0.25 5.29 16 4 O -0.50 -6.63 13.50 -18.75 -0.25 -6.88 16 5 C -0.07 -0.70 2.37 -91.74 -0.22 -0.92 16 6 H 0.11 0.81 8.14 -51.92 -0.42 0.39 16 7 C -0.13 -1.22 4.96 -26.61 -0.13 -1.35 16 8 C 0.12 1.27 6.43 -3.69 -0.02 1.25 16 9 N -1.01 -13.92 2.68 -113.50 -0.30 -14.22 16 10 S 2.61 49.69 5.19 -107.50 -0.56 49.13 16 11 O -0.96 -19.74 16.59 -57.54 -0.95 -20.69 16 12 O -0.93 -21.44 16.25 -57.54 -0.93 -22.38 16 13 C -0.58 -10.96 5.65 37.16 0.21 -10.75 16 14 C 0.00 0.03 0.79 -155.66 -0.12 -0.10 16 15 C -0.51 -14.14 8.77 -34.45 -0.30 -14.44 16 16 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 17 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 18 N -0.88 -26.56 13.96 55.43 0.77 -25.78 16 19 Si 0.87 20.74 24.96 -169.99 -4.24 16.49 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -5.55 5.68 56.52 0.32 -5.23 16 23 C -0.18 -3.59 9.96 -26.69 -0.27 -3.86 16 24 C -0.19 -3.78 7.67 -26.69 -0.20 -3.98 16 25 C 0.12 1.48 5.82 -3.72 -0.02 1.46 16 26 C -0.08 -0.97 2.36 -90.50 -0.21 -1.18 16 27 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 28 C -0.16 -2.22 8.40 37.16 0.31 -1.91 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 32 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.11 6.86 -51.93 -0.36 0.75 16 36 H 0.13 2.37 6.53 -51.93 -0.34 2.03 16 37 H 0.10 1.59 8.09 -51.92 -0.42 1.17 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.08 1.46 8.14 -51.92 -0.42 1.03 16 40 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 41 H 0.09 1.98 7.34 -51.93 -0.38 1.60 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.10 1.46 6.86 -51.93 -0.36 1.10 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.81 5.98 -51.93 -0.31 0.50 16 46 H 0.07 1.01 5.65 -51.93 -0.29 0.72 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -35.15 377.19 -8.45 -43.60 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.49 Total: 5.62 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 0.24 Total: -26.77 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.47 Total: -40.01 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.55 Total: -53.74 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.24 Total: 16.49 kcal Atomic # 16 Polarization: 49.69 SS G_CDS: -0.56 Total: 49.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.15 -8.45 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451447163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.490 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds