Wall clock time and date at job start Wed Apr 1 2020 03:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34232 * 117.00034 * 2 1 4 4 O 1.20828 * 119.99561 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00525 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.45292 * 299.96688 * 5 3 2 7 7 C 1.53036 * 109.45888 * 59.92493 * 5 3 2 8 8 C 1.53191 * 109.31087 * 181.39198 * 7 5 3 9 9 N 1.46966 * 108.88683 * 305.44466 * 8 7 5 10 10 S 1.65602 * 120.65198 * 233.53664 * 9 8 7 11 11 O 1.42095 * 104.28315 * 25.88711 * 10 9 8 12 12 O 1.42100 * 104.27591 * 153.74926 * 10 9 8 13 13 C 1.81410 * 104.44674 * 269.81806 * 10 9 8 14 14 C 1.53003 * 109.46960 * 174.01646 * 13 10 9 15 15 C 1.50695 * 115.55135 * 65.27723 * 14 13 10 16 16 H 1.08008 * 120.00108 * 268.54632 * 15 14 13 17 17 C 1.37870 * 120.00305 * 88.54419 * 15 14 13 18 18 N 1.31514 * 120.00577 * 174.69811 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 354.69885 * 17 15 14 20 20 H 1.48502 * 109.47282 * 92.55251 * 19 17 15 21 21 H 1.48504 * 109.47493 * 212.55395 * 19 17 15 22 22 H 1.48501 * 109.47160 * 332.55478 * 19 17 15 23 23 C 1.52999 * 117.49833 * 279.60434 * 14 13 10 24 24 C 1.53004 * 117.49602 * 210.94420 * 14 13 10 25 25 C 1.46921 * 118.71661 * 53.35475 * 9 8 7 26 26 C 1.53035 * 109.46374 * 180.02562 * 5 3 2 27 27 H 1.09002 * 109.50071 * 58.65739 * 26 5 3 28 28 C 1.53002 * 109.52158 * 298.57858 * 26 5 3 29 29 H 1.09003 * 109.46533 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47118 * 300.00216 * 1 2 3 31 31 H 1.08997 * 109.46539 * 60.00350 * 1 2 3 32 32 H 1.08999 * 109.50262 * 301.33986 * 7 5 3 33 33 H 1.09001 * 109.49683 * 61.43875 * 7 5 3 34 34 H 1.08993 * 109.59211 * 65.15375 * 8 7 5 35 35 H 1.09002 * 109.58505 * 185.58306 * 8 7 5 36 36 H 1.08998 * 109.46946 * 294.01245 * 13 10 9 37 37 H 1.08999 * 109.47227 * 54.01416 * 13 10 9 38 38 H 0.96996 * 120.00354 * 180.02562 * 18 17 15 39 39 H 1.09008 * 117.49585 * 0.02562 * 23 14 13 40 40 H 1.08995 * 117.50006 * 145.02072 * 23 14 13 41 41 H 1.08997 * 117.49730 * 214.98066 * 24 14 13 42 42 H 1.08995 * 117.49624 * 0.02562 * 24 14 13 43 43 H 1.08998 * 109.58920 * 186.78370 * 25 9 8 44 44 H 1.09004 * 109.58590 * 66.50087 * 25 9 8 45 45 H 1.09000 * 109.47379 * 300.14906 * 28 26 5 46 46 H 1.09007 * 109.47360 * 60.14606 * 28 26 5 47 47 H 1.08998 * 109.47209 * 180.14556 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2750 -0.0006 6 1 3.9562 0.7812 0.8896 7 6 4.1129 0.5799 -1.2496 8 6 5.6438 0.6317 -1.2293 9 7 6.0705 2.0302 -1.0813 10 16 7.1370 2.7055 -2.1532 11 8 6.9582 1.9542 -3.3460 12 8 6.8429 4.0952 -2.1117 13 6 8.7699 2.3786 -1.4338 14 6 9.8573 2.8274 -2.4121 15 6 9.9178 4.3087 -2.6819 16 1 9.3607 4.7309 -3.5053 17 6 10.6843 5.1252 -1.8778 18 7 10.8211 6.3992 -2.1740 19 14 11.5287 4.4218 -0.3672 20 1 12.9044 3.9914 -0.7244 21 1 11.5945 5.4606 0.6920 22 1 10.7587 3.2542 0.1317 23 6 10.2016 1.8844 -3.5667 24 6 11.1790 2.0567 -2.4013 25 6 5.5295 2.8191 0.0339 26 6 4.0000 2.7427 0.0002 27 1 3.5909 3.2425 0.8782 28 6 3.4827 3.4292 -1.2655 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 3.7843 -0.4593 -1.2609 33 1 3.7434 1.0885 -2.1401 34 1 6.0182 0.0469 -0.3892 35 1 6.0355 0.2269 -2.1625 36 1 8.8721 2.9301 -0.4991 37 1 8.8742 1.3112 -1.2392 38 1 11.3607 6.9735 -1.6085 39 1 9.6531 0.9444 -3.6295 40 1 10.4723 2.3354 -4.5213 41 1 12.0923 2.6211 -2.5897 42 1 11.2737 1.2298 -1.6975 43 1 5.8459 3.8574 -0.0656 44 1 5.8944 2.4149 0.9782 45 1 3.8911 2.9284 -2.1433 46 1 2.3943 3.3747 -1.2896 47 1 3.7942 4.4738 -1.2654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451447163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:49 Heat of formation + Delta-G solvation = -152.682556 kcal Electronic energy + Delta-G solvation = -30244.623151 eV Core-core repulsion = 26133.785143 eV Total energy + Delta-G solvation = -4110.838008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.88272 -39.63756 -38.83216 -38.02636 -37.48469 -36.75977 -34.29828 -34.19645 -32.83389 -30.06540 -29.18146 -27.87735 -27.62023 -26.15916 -23.99337 -23.33800 -22.43616 -21.28532 -20.50295 -19.48781 -18.84994 -18.55877 -18.43057 -17.55867 -17.16306 -17.11484 -16.92699 -16.67231 -15.91698 -15.55723 -15.48622 -15.32121 -14.81954 -14.78116 -14.75992 -14.50165 -14.09815 -13.92384 -13.78868 -13.42451 -13.20644 -13.09896 -12.96306 -12.92386 -12.86654 -12.66798 -12.41161 -12.36851 -12.33658 -12.11815 -12.03670 -11.80312 -11.71536 -11.68613 -11.50894 -11.46395 -11.13740 -10.96244 -10.72139 -10.32182 -9.79453 -8.31986 -6.45748 -0.57953 1.17542 1.36507 1.37948 1.51661 1.75460 1.95493 2.36467 2.95535 3.01739 3.18531 3.33521 3.46536 3.62082 3.79142 3.80992 3.99995 4.10033 4.17891 4.20799 4.32300 4.33480 4.34408 4.34907 4.39519 4.53689 4.64292 4.65861 4.72293 4.75064 4.75992 4.86629 4.86757 4.89413 4.96981 5.04995 5.09257 5.13719 5.22943 5.29181 5.36554 5.46083 5.50213 5.62480 5.76477 6.19298 6.65830 6.75535 7.27124 8.84595 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.003247 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.854735 B = 8621.796340 C = 8997.226873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.532 6.532 5 C -0.067 4.067 6 H 0.150 0.850 7 C -0.124 4.124 8 C 0.111 3.889 9 N -1.002 6.002 10 S 2.611 3.389 11 O -0.990 6.990 12 O -0.993 6.993 13 C -0.571 4.571 14 C -0.033 4.033 15 C -0.515 4.515 16 H 0.024 0.976 17 C 0.023 3.977 18 N -0.944 5.944 19 Si 0.936 3.064 20 H -0.263 1.263 21 H -0.295 1.295 22 H -0.210 1.210 23 C -0.175 4.175 24 C -0.168 4.168 25 C 0.115 3.885 26 C -0.082 4.082 27 H 0.100 0.900 28 C -0.160 4.160 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.160 0.840 38 H 0.268 0.732 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.039 0.961 46 H 0.068 0.932 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 -20.591 11.339 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.422 6.422 5 C -0.086 4.086 6 H 0.168 0.832 7 C -0.163 4.163 8 C -0.013 4.013 9 N -0.841 5.841 10 S 2.710 3.290 11 O -0.980 6.980 12 O -0.983 6.983 13 C -0.703 4.703 14 C -0.036 4.036 15 C -0.552 4.552 16 H 0.042 0.958 17 C -0.176 4.176 18 N -0.582 5.582 19 Si 0.758 3.242 20 H -0.188 1.188 21 H -0.222 1.222 22 H -0.132 1.132 23 C -0.212 4.212 24 C -0.206 4.206 25 C -0.009 4.009 26 C -0.102 4.102 27 H 0.118 0.882 28 C -0.217 4.217 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.150 0.850 37 H 0.178 0.822 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.133 0.867 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.282 -19.685 10.564 27.068 hybrid contribution 0.476 1.063 0.289 1.200 sum -14.806 -18.622 10.853 26.150 Atomic orbital electron populations 1.23509 0.75222 1.05579 1.02222 1.86500 1.24563 1.32721 1.83637 1.24151 0.92607 0.81135 0.71094 1.90630 1.67961 1.37265 1.46342 1.21140 0.85832 0.98048 1.03597 0.83206 1.21935 0.95968 1.02624 0.95776 1.21784 0.94288 0.80195 1.04991 1.57759 1.59421 1.22132 1.44789 1.04716 0.76823 0.73049 0.74455 1.93447 1.86075 1.73082 1.45396 1.93512 1.83806 1.34425 1.86542 1.30205 1.18278 1.11421 1.10359 1.18778 0.95231 0.91901 0.97669 1.20470 1.29745 0.90342 1.14687 0.95804 1.26011 0.96101 0.94542 1.00921 1.70078 1.40692 1.07201 1.40232 0.85938 0.80190 0.79865 0.78226 1.18819 1.22167 1.13213 1.23105 1.04003 1.00725 0.93372 1.23101 0.93209 1.02373 1.01913 1.21709 0.92663 0.96392 0.90168 1.21284 0.95220 0.94148 0.99587 0.88198 1.22048 1.01888 1.00071 0.97682 0.85053 0.91974 0.92639 0.86577 0.92889 0.86498 0.88805 0.85000 0.82208 0.92276 0.86679 0.90558 0.90417 0.86053 0.90448 0.86721 0.94221 0.91287 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -5.69 10.44 -51.43 -0.54 -6.22 16 3 C 0.47 9.07 6.97 71.24 0.50 9.56 16 4 O -0.53 -13.77 13.50 21.96 0.30 -13.47 16 5 C -0.07 -1.07 2.37 -11.52 -0.03 -1.09 16 6 H 0.15 1.27 8.14 -2.38 -0.02 1.25 16 7 C -0.12 -2.00 4.96 30.67 0.15 -1.85 16 8 C 0.11 1.88 6.43 86.35 0.56 2.44 16 9 N -1.00 -25.09 2.68 -513.00 -1.37 -26.46 16 10 S 2.61 98.50 5.19 -56.49 -0.29 98.20 16 11 O -0.99 -40.51 16.59 -127.65 -2.12 -42.63 16 12 O -0.99 -48.42 16.25 -127.65 -2.07 -50.49 16 13 C -0.57 -19.66 5.65 71.98 0.41 -19.26 16 14 C -0.03 -1.45 0.79 -52.93 -0.04 -1.50 16 15 C -0.52 -29.76 8.77 25.60 0.22 -29.54 16 16 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 17 C 0.02 1.33 5.47 84.65 0.46 1.80 16 18 N -0.94 -60.16 13.96 21.44 0.30 -59.86 16 19 Si 0.94 41.64 24.96 68.60 1.71 43.36 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.21 -7.73 5.68 99.48 0.57 -7.16 16 23 C -0.17 -6.74 9.96 30.62 0.30 -6.44 16 24 C -0.17 -6.16 7.67 30.62 0.23 -5.93 16 25 C 0.12 2.56 5.82 86.36 0.50 3.06 16 26 C -0.08 -1.76 2.36 -10.72 -0.03 -1.78 16 27 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 28 C -0.16 -4.61 8.40 71.98 0.60 -4.01 16 29 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 32 H 0.12 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.05 1.15 6.34 -2.39 -0.02 1.13 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.75 6.86 -2.39 -0.02 1.73 16 36 H 0.13 4.41 6.53 -2.39 -0.02 4.39 16 37 H 0.16 3.72 8.09 -2.39 -0.02 3.70 16 38 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.12 3.65 8.14 -2.38 -0.02 3.63 16 40 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.08 3.10 7.34 -2.39 -0.02 3.08 16 42 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.08 2.17 6.86 -2.39 -0.02 2.15 16 44 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.04 1.23 5.98 -2.39 -0.01 1.22 16 46 H 0.07 2.01 5.65 -2.38 -0.01 2.00 16 47 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -86.01 377.19 1.78 -84.22 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.82 Total: 26.36 kcal Atomic # 6 Polarization: -58.06 SS G_CDS: 5.05 Total: -53.01 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -1.08 Total: -86.32 kcal Atomic # 8 Polarization: -108.38 SS G_CDS: -4.43 Total: -112.81 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.71 Total: 43.36 kcal Atomic # 16 Polarization: 98.50 SS G_CDS: -0.29 Total: 98.20 kcal Total: -86.01 1.78 -84.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451447163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.458 kcal (2) G-P(sol) polarization free energy of solvation -86.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds