Wall clock time and date at job start Wed Apr 1 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00327 * 2 1 4 4 O 1.20832 * 119.99523 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00351 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46158 * 59.96263 * 5 3 2 7 7 C 1.53043 * 109.45573 * 299.99548 * 5 3 2 8 8 C 1.53191 * 109.31306 * 178.62870 * 7 5 3 9 9 N 1.46930 * 108.77584 * 54.63101 * 8 7 5 10 10 S 1.65602 * 120.62683 * 126.36956 * 9 8 7 11 11 O 1.42101 * 104.27771 * 333.92980 * 10 9 8 12 12 O 1.42100 * 104.27475 * 206.06981 * 10 9 8 13 13 C 1.81399 * 104.44824 * 90.00390 * 10 9 8 14 14 C 1.53002 * 109.47204 * 172.45107 * 13 10 9 15 15 C 1.50696 * 115.55035 * 40.16552 * 14 13 10 16 16 H 1.08006 * 120.00576 * 269.29669 * 15 14 13 17 17 C 1.37877 * 120.00269 * 89.29371 * 15 14 13 18 18 N 1.31522 * 119.99568 * 352.03228 * 17 15 14 19 19 Si 1.86800 * 120.00469 * 172.03837 * 17 15 14 20 20 H 1.48505 * 109.46814 * 90.00009 * 19 17 15 21 21 H 1.48500 * 109.47189 * 209.99926 * 19 17 15 22 22 H 1.48494 * 109.46835 * 330.00261 * 19 17 15 23 23 C 1.52998 * 117.49925 * 254.46003 * 14 13 10 24 24 C 1.52993 * 60.00186 * 252.50769 * 23 14 13 25 25 C 1.46920 * 118.73872 * 306.64578 * 9 8 7 26 26 C 1.52762 * 109.00950 * 53.30844 * 25 9 8 27 27 H 1.09006 * 109.35984 * 65.49880 * 26 25 9 28 28 C 1.52994 * 109.59264 * 185.53236 * 26 25 9 29 29 H 1.09002 * 109.47584 * 300.00543 * 1 2 3 30 30 H 1.09001 * 109.47035 * 60.00506 * 1 2 3 31 31 H 1.08999 * 109.47613 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.50009 * 58.67681 * 7 5 3 33 33 H 1.08997 * 109.52374 * 298.59153 * 7 5 3 34 34 H 1.09003 * 109.58602 * 294.84910 * 8 7 5 35 35 H 1.09000 * 109.58800 * 174.42343 * 8 7 5 36 36 H 1.08997 * 109.47242 * 52.44720 * 13 10 9 37 37 H 1.08998 * 109.47285 * 292.44942 * 13 10 9 38 38 H 0.96997 * 120.00141 * 185.01687 * 18 17 15 39 39 H 1.09000 * 117.49942 * 359.97438 * 23 14 13 40 40 H 1.09009 * 117.50033 * 145.01569 * 23 14 13 41 41 H 1.08996 * 117.49802 * 252.51462 * 24 23 14 42 42 H 1.09002 * 117.49951 * 107.48269 * 24 23 14 43 43 H 1.09000 * 109.58725 * 173.14052 * 25 9 8 44 44 H 1.09001 * 109.59022 * 293.56380 * 25 9 8 45 45 H 1.09006 * 109.47421 * 179.97438 * 28 26 25 46 46 H 1.08998 * 109.47709 * 299.98313 * 28 26 25 47 47 H 1.09006 * 109.47190 * 59.98233 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9555 0.7803 -0.8905 7 6 4.1136 0.5808 1.2488 8 6 5.6445 0.6329 1.2277 9 7 6.0681 2.0321 1.0801 10 16 7.1322 2.7091 2.1533 11 8 6.9505 1.9597 3.3469 12 8 6.8383 4.0987 2.1088 13 6 8.7666 2.3810 1.4381 14 6 9.8344 3.1230 2.2445 15 6 9.6407 3.1180 3.7389 16 1 9.0805 3.9101 4.2136 17 6 10.1784 2.1023 4.5005 18 7 10.7236 1.0588 3.9142 19 14 10.1326 2.2079 6.3650 20 1 8.8811 1.5846 6.8654 21 1 11.3034 1.4904 6.9303 22 1 10.1769 3.6327 6.7812 23 6 10.4523 4.3737 1.6160 24 6 11.2706 3.0850 1.7183 25 6 5.5250 2.8208 -0.0341 26 6 3.9997 2.7426 -0.0021 27 1 3.6317 3.2316 0.8999 28 6 3.4241 3.4437 -1.2341 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.7851 -0.4584 1.2612 33 1 3.7446 1.0897 2.1393 34 1 6.0185 0.0474 0.3878 35 1 6.0368 0.2288 2.1610 36 1 8.7868 2.7261 0.4044 37 1 8.9679 1.3102 1.4677 38 1 11.0362 0.3112 4.4473 39 1 10.0983 4.6676 0.6279 40 1 10.7186 5.1933 2.2835 41 1 12.0752 3.0567 2.4530 42 1 11.4546 2.5313 0.7976 43 1 5.8384 3.8599 0.0668 44 1 5.8891 2.4174 -0.9790 45 1 2.3358 3.3864 -1.2095 46 1 3.7330 4.4890 -1.2348 47 1 3.7933 2.9552 -2.1359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451447166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:58 Heat of formation + Delta-G solvation = -135.943002 kcal Electronic energy + Delta-G solvation = -30043.442846 eV Core-core repulsion = 25933.330719 eV Total energy + Delta-G solvation = -4110.112127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99821 -38.55028 -36.73524 -36.64306 -36.21119 -34.94006 -33.33920 -32.21325 -32.04060 -28.36477 -28.16748 -26.83617 -25.58000 -25.10498 -22.29423 -21.71776 -21.18421 -20.07880 -19.52336 -18.23595 -17.83494 -17.19614 -16.78475 -16.43759 -16.35033 -15.66860 -15.08872 -14.67712 -14.55095 -14.28810 -14.22452 -13.98989 -13.85820 -13.61013 -13.32807 -13.00981 -12.58335 -12.46194 -12.21988 -12.20620 -12.05385 -11.90332 -11.78639 -11.33163 -11.12941 -11.07089 -11.01924 -10.98282 -10.91200 -10.87671 -10.77704 -10.51600 -10.50241 -10.35200 -10.14034 -10.09549 -9.72544 -8.99426 -8.77077 -8.51573 -8.09575 -6.16493 -4.30960 1.11570 2.00489 2.49473 3.32227 3.39256 3.42778 3.43264 4.32486 4.38983 4.51331 4.57211 4.76139 4.83223 4.85083 4.90695 4.98276 5.03828 5.10070 5.14556 5.23142 5.25270 5.28389 5.43229 5.47840 5.60031 5.64250 5.67633 5.76833 5.83215 5.90094 5.95640 6.03515 6.05251 6.23290 6.27626 6.33053 6.37688 6.41623 6.61331 6.70877 6.86814 6.97823 7.19659 7.42007 7.56768 7.77599 8.18375 8.77433 9.45542 10.90707 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.003292 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.879376 B = 8503.702440 C = 9258.224235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.501 6.501 5 C -0.073 4.073 6 H 0.111 0.889 7 C -0.124 4.124 8 C 0.120 3.880 9 N -1.017 6.017 10 S 2.621 3.379 11 O -0.941 6.941 12 O -0.970 6.970 13 C -0.559 4.559 14 C 0.048 3.952 15 C -0.543 4.543 16 H 0.068 0.932 17 C 0.096 3.904 18 N -0.866 5.866 19 Si 0.889 3.111 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.205 4.205 24 C -0.140 4.140 25 C 0.124 3.876 26 C -0.088 4.088 27 H 0.085 0.915 28 C -0.161 4.161 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.265 0.735 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.408 -4.287 -12.063 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.388 6.388 5 C -0.092 4.092 6 H 0.129 0.871 7 C -0.163 4.163 8 C -0.006 4.006 9 N -0.852 5.852 10 S 2.719 3.281 11 O -0.931 6.931 12 O -0.960 6.960 13 C -0.692 4.692 14 C 0.046 3.954 15 C -0.580 4.580 16 H 0.086 0.914 17 C -0.111 4.111 18 N -0.501 5.501 19 Si 0.715 3.285 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.242 4.242 24 C -0.179 4.179 25 C -0.002 4.002 26 C -0.108 4.108 27 H 0.104 0.896 28 C -0.219 4.219 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.752 -3.718 -11.231 18.910 hybrid contribution 0.195 -0.407 0.329 0.559 sum -14.557 -4.125 -10.902 18.649 Atomic orbital electron populations 1.23251 0.76563 1.03608 1.02493 1.86522 1.23253 1.33681 1.84072 1.23921 0.92114 0.81168 0.71878 1.90600 1.67235 1.36055 1.44909 1.21156 0.86485 0.99390 1.02145 0.87116 1.21901 0.96694 1.01342 0.96365 1.21378 0.93535 0.82095 1.03580 1.58360 1.61115 1.20543 1.45220 1.04816 0.75625 0.73804 0.73851 1.93518 1.84888 1.72377 1.42310 1.93467 1.83799 1.32314 1.86455 1.30034 1.20378 1.10571 1.08205 1.18179 0.90219 0.94046 0.92928 1.20583 1.37728 1.10884 0.88804 0.91361 1.24904 0.92579 0.94625 0.99005 1.69969 1.38239 1.05817 1.36031 0.86612 0.78019 0.78807 0.85034 1.19618 1.20942 1.19373 1.23152 1.07988 0.92887 1.00212 1.22490 0.96494 0.98435 1.00485 1.21359 0.92314 0.97099 0.89448 1.21282 0.95791 0.92622 1.01074 0.89619 1.22083 1.03249 1.00580 0.95973 0.91904 0.92006 0.88173 0.89420 0.90614 0.91307 0.87799 0.88569 0.85608 0.92557 0.91323 0.89695 0.89528 0.91664 0.88205 0.91551 0.89989 0.92002 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.62 10.44 -39.26 -0.41 -4.03 16 3 C 0.47 5.35 6.96 36.00 0.25 5.60 16 4 O -0.50 -6.82 13.32 -18.75 -0.25 -7.07 16 5 C -0.07 -0.77 2.14 -91.73 -0.20 -0.97 16 6 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 7 C -0.12 -1.39 5.30 -26.61 -0.14 -1.53 16 8 C 0.12 1.53 6.43 -3.71 -0.02 1.50 16 9 N -1.02 -15.48 3.23 -113.77 -0.37 -15.84 16 10 S 2.62 54.33 4.60 -107.50 -0.49 53.83 16 11 O -0.94 -22.73 15.82 -57.54 -0.91 -23.64 16 12 O -0.97 -22.13 16.58 -57.54 -0.95 -23.08 16 13 C -0.56 -11.55 6.29 37.16 0.23 -11.31 16 14 C 0.05 1.17 1.71 -155.66 -0.27 0.91 16 15 C -0.54 -14.90 6.99 -34.44 -0.24 -15.14 16 16 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 17 C 0.10 2.64 5.35 -17.82 -0.10 2.54 16 18 N -0.87 -23.80 12.79 55.43 0.71 -23.09 16 19 Si 0.89 21.65 29.55 -169.99 -5.02 16.63 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.21 -4.45 9.88 -26.74 -0.26 -4.71 16 24 C -0.14 -3.19 9.26 -26.73 -0.25 -3.44 16 25 C 0.12 1.58 5.69 -3.94 -0.02 1.55 16 26 C -0.09 -1.06 2.04 -90.73 -0.19 -1.24 16 27 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 28 C -0.16 -1.70 8.86 37.15 0.33 -1.37 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.48 6.86 -51.93 -0.36 1.12 16 36 H 0.10 1.64 7.95 -51.93 -0.41 1.23 16 37 H 0.13 2.60 8.14 -51.93 -0.42 2.18 16 38 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 40 H 0.08 1.84 8.14 -51.92 -0.42 1.41 16 41 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.10 1.37 6.85 -51.93 -0.36 1.01 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.96 5.40 -51.93 -0.28 0.68 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -33.68 388.45 -9.36 -43.04 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.71 Total: 3.68 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 0.20 Total: -26.28 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.34 Total: -38.93 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -2.52 Total: -57.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 54.33 SS G_CDS: -0.49 Total: 53.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.68 -9.36 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451447166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.908 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds