Wall clock time and date at job start Wed Apr 1 2020 03:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00327 * 2 1 4 4 O 1.20832 * 119.99523 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00351 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46158 * 59.96263 * 5 3 2 7 7 C 1.53043 * 109.45573 * 299.99548 * 5 3 2 8 8 C 1.53191 * 109.31306 * 178.62870 * 7 5 3 9 9 N 1.46930 * 108.77584 * 54.63101 * 8 7 5 10 10 S 1.65602 * 120.62683 * 126.36956 * 9 8 7 11 11 O 1.42101 * 104.27771 * 333.92980 * 10 9 8 12 12 O 1.42100 * 104.27475 * 206.06981 * 10 9 8 13 13 C 1.81399 * 104.44824 * 90.00390 * 10 9 8 14 14 C 1.53002 * 109.47204 * 172.45107 * 13 10 9 15 15 C 1.50696 * 115.55035 * 40.16552 * 14 13 10 16 16 H 1.08006 * 120.00576 * 269.29669 * 15 14 13 17 17 C 1.37877 * 120.00269 * 89.29371 * 15 14 13 18 18 N 1.31522 * 119.99568 * 352.03228 * 17 15 14 19 19 Si 1.86800 * 120.00469 * 172.03837 * 17 15 14 20 20 H 1.48505 * 109.46814 * 90.00009 * 19 17 15 21 21 H 1.48500 * 109.47189 * 209.99926 * 19 17 15 22 22 H 1.48494 * 109.46835 * 330.00261 * 19 17 15 23 23 C 1.52998 * 117.49925 * 254.46003 * 14 13 10 24 24 C 1.52993 * 60.00186 * 252.50769 * 23 14 13 25 25 C 1.46920 * 118.73872 * 306.64578 * 9 8 7 26 26 C 1.52762 * 109.00950 * 53.30844 * 25 9 8 27 27 H 1.09006 * 109.35984 * 65.49880 * 26 25 9 28 28 C 1.52994 * 109.59264 * 185.53236 * 26 25 9 29 29 H 1.09002 * 109.47584 * 300.00543 * 1 2 3 30 30 H 1.09001 * 109.47035 * 60.00506 * 1 2 3 31 31 H 1.08999 * 109.47613 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.50009 * 58.67681 * 7 5 3 33 33 H 1.08997 * 109.52374 * 298.59153 * 7 5 3 34 34 H 1.09003 * 109.58602 * 294.84910 * 8 7 5 35 35 H 1.09000 * 109.58800 * 174.42343 * 8 7 5 36 36 H 1.08997 * 109.47242 * 52.44720 * 13 10 9 37 37 H 1.08998 * 109.47285 * 292.44942 * 13 10 9 38 38 H 0.96997 * 120.00141 * 185.01687 * 18 17 15 39 39 H 1.09000 * 117.49942 * 359.97438 * 23 14 13 40 40 H 1.09009 * 117.50033 * 145.01569 * 23 14 13 41 41 H 1.08996 * 117.49802 * 252.51462 * 24 23 14 42 42 H 1.09002 * 117.49951 * 107.48269 * 24 23 14 43 43 H 1.09000 * 109.58725 * 173.14052 * 25 9 8 44 44 H 1.09001 * 109.59022 * 293.56380 * 25 9 8 45 45 H 1.09006 * 109.47421 * 179.97438 * 28 26 25 46 46 H 1.08998 * 109.47709 * 299.98313 * 28 26 25 47 47 H 1.09006 * 109.47190 * 59.98233 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9555 0.7803 -0.8905 7 6 4.1136 0.5808 1.2488 8 6 5.6445 0.6329 1.2277 9 7 6.0681 2.0321 1.0801 10 16 7.1322 2.7091 2.1533 11 8 6.9505 1.9597 3.3469 12 8 6.8383 4.0987 2.1088 13 6 8.7666 2.3810 1.4381 14 6 9.8344 3.1230 2.2445 15 6 9.6407 3.1180 3.7389 16 1 9.0805 3.9101 4.2136 17 6 10.1784 2.1023 4.5005 18 7 10.7236 1.0588 3.9142 19 14 10.1326 2.2079 6.3650 20 1 8.8811 1.5846 6.8654 21 1 11.3034 1.4904 6.9303 22 1 10.1769 3.6327 6.7812 23 6 10.4523 4.3737 1.6160 24 6 11.2706 3.0850 1.7183 25 6 5.5250 2.8208 -0.0341 26 6 3.9997 2.7426 -0.0021 27 1 3.6317 3.2316 0.8999 28 6 3.4241 3.4437 -1.2341 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.7851 -0.4584 1.2612 33 1 3.7446 1.0897 2.1393 34 1 6.0185 0.0474 0.3878 35 1 6.0368 0.2288 2.1610 36 1 8.7868 2.7261 0.4044 37 1 8.9679 1.3102 1.4677 38 1 11.0362 0.3112 4.4473 39 1 10.0983 4.6676 0.6279 40 1 10.7186 5.1933 2.2835 41 1 12.0752 3.0567 2.4530 42 1 11.4546 2.5313 0.7976 43 1 5.8384 3.8599 0.0668 44 1 5.8891 2.4174 -0.9790 45 1 2.3358 3.3864 -1.2095 46 1 3.7330 4.4890 -1.2348 47 1 3.7933 2.9552 -2.1359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451447166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:57 Heat of formation + Delta-G solvation = -157.820484 kcal Electronic energy + Delta-G solvation = -30044.391525 eV Core-core repulsion = 25933.330719 eV Total energy + Delta-G solvation = -4111.060806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86211 -39.49546 -38.52421 -37.92442 -37.52226 -36.65914 -34.38743 -34.08349 -33.15212 -29.86184 -29.07327 -27.67532 -27.52258 -26.16444 -23.26751 -22.93727 -22.61076 -21.38555 -20.98700 -19.68841 -18.78904 -18.48933 -18.22198 -17.65429 -17.33796 -16.96501 -16.88293 -16.51342 -15.76741 -15.52011 -15.28906 -15.09657 -15.04049 -14.84113 -14.62065 -14.18145 -13.90426 -13.72151 -13.52437 -13.37527 -13.16616 -13.03995 -12.94656 -12.90586 -12.88091 -12.81012 -12.56560 -12.42492 -12.32346 -12.07538 -11.97744 -11.89135 -11.78482 -11.68105 -11.54462 -11.45118 -11.08919 -10.86583 -10.50726 -10.09098 -9.73878 -8.23424 -6.40601 -0.45973 1.14371 1.34755 1.39889 1.45679 1.74232 2.06258 2.38496 3.04796 3.14352 3.33359 3.43474 3.51147 3.67439 3.75150 3.89938 4.01493 4.15235 4.24822 4.32371 4.32592 4.34116 4.36799 4.54507 4.60580 4.61860 4.64268 4.69228 4.73435 4.75118 4.84688 4.86168 4.87176 5.00477 5.05111 5.12221 5.15296 5.21657 5.32658 5.34673 5.42728 5.57292 5.63657 5.67738 5.77061 6.20970 6.68120 6.73639 7.36260 8.83205 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.003292 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.879376 B = 8503.702440 C = 9258.224235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.529 6.529 5 C -0.069 4.069 6 H 0.147 0.853 7 C -0.120 4.120 8 C 0.112 3.888 9 N -1.009 6.009 10 S 2.626 3.374 11 O -0.988 6.988 12 O -1.001 7.001 13 C -0.552 4.552 14 C 0.012 3.988 15 C -0.559 4.559 16 H 0.044 0.956 17 C 0.059 3.941 18 N -0.881 5.881 19 Si 0.924 3.076 20 H -0.279 1.279 21 H -0.267 1.267 22 H -0.269 1.269 23 C -0.192 4.192 24 C -0.137 4.137 25 C 0.117 3.883 26 C -0.088 4.088 27 H 0.051 0.949 28 C -0.155 4.155 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.267 0.733 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.730 -5.646 -14.847 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.418 6.418 5 C -0.088 4.088 6 H 0.164 0.836 7 C -0.159 4.159 8 C -0.013 4.013 9 N -0.848 5.848 10 S 2.726 3.274 11 O -0.978 6.978 12 O -0.992 6.992 13 C -0.685 4.685 14 C 0.010 3.990 15 C -0.596 4.596 16 H 0.062 0.938 17 C -0.147 4.147 18 N -0.516 5.516 19 Si 0.749 3.251 20 H -0.204 1.204 21 H -0.191 1.191 22 H -0.193 1.193 23 C -0.229 4.229 24 C -0.176 4.176 25 C -0.007 4.007 26 C -0.108 4.108 27 H 0.069 0.931 28 C -0.213 4.213 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.132 0.868 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.066 -5.077 -14.000 21.184 hybrid contribution 0.194 0.019 1.167 1.183 sum -14.872 -5.059 -12.833 20.284 Atomic orbital electron populations 1.23522 0.75094 1.05608 1.02331 1.86506 1.24705 1.32742 1.83597 1.24068 0.92464 0.81168 0.71147 1.90601 1.67898 1.37047 1.46295 1.21170 0.86063 0.98405 1.03113 0.83552 1.21874 0.95581 1.02710 0.95755 1.21669 0.94471 0.80769 1.04352 1.57900 1.59976 1.21787 1.45116 1.04252 0.76305 0.72958 0.73929 1.93452 1.85713 1.73052 1.45605 1.93416 1.84386 1.34266 1.87093 1.29888 1.18685 1.10064 1.09834 1.18331 0.92077 0.96674 0.91912 1.20723 1.37458 1.10192 0.91259 0.93826 1.25415 0.92746 0.94705 1.01788 1.69988 1.38792 1.06013 1.36809 0.86074 0.78141 0.78850 0.82049 1.20436 1.19127 1.19315 1.23229 1.06363 0.91914 1.01404 1.22431 0.94967 0.99476 1.00677 1.21654 0.92582 0.96495 0.90006 1.21231 0.95365 0.93797 1.00412 0.93063 1.22019 1.02337 1.00711 0.96207 0.92614 0.91709 0.85120 0.86770 0.93260 0.87114 0.89921 0.84464 0.85732 0.92323 0.87920 0.90497 0.91867 0.89311 0.89525 0.87179 0.91285 0.92126 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.42 10.44 -51.44 -0.54 -6.96 16 3 C 0.47 9.95 6.96 71.23 0.50 10.44 16 4 O -0.53 -14.14 13.32 21.95 0.29 -13.84 16 5 C -0.07 -1.28 2.14 -11.51 -0.02 -1.30 16 6 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 7 C -0.12 -2.48 5.30 30.67 0.16 -2.31 16 8 C 0.11 2.62 6.43 86.36 0.56 3.18 16 9 N -1.01 -29.22 3.23 -513.84 -1.66 -30.88 16 10 S 2.63 109.26 4.60 -56.49 -0.26 109.00 16 11 O -0.99 -49.44 15.82 -127.65 -2.02 -51.46 16 12 O -1.00 -46.51 16.58 -127.65 -2.12 -48.62 16 13 C -0.55 -21.89 6.29 71.98 0.45 -21.44 16 14 C 0.01 0.58 1.71 -52.93 -0.09 0.49 16 15 C -0.56 -31.32 6.99 25.60 0.18 -31.14 16 16 H 0.04 2.58 7.83 -2.91 -0.02 2.56 16 17 C 0.06 3.26 5.35 84.65 0.45 3.72 16 18 N -0.88 -48.62 12.79 21.45 0.27 -48.34 16 19 Si 0.92 44.92 29.55 68.60 2.03 46.94 16 20 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 23 C -0.19 -8.02 9.88 30.59 0.30 -7.72 16 24 C -0.14 -6.04 9.26 30.59 0.28 -5.76 16 25 C 0.12 2.70 5.69 86.22 0.49 3.19 16 26 C -0.09 -1.98 2.04 -10.86 -0.02 -2.00 16 27 H 0.05 1.49 8.13 -2.38 -0.02 1.47 16 28 C -0.16 -2.94 8.86 71.98 0.64 -2.31 16 29 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.33 6.86 -2.39 -0.02 2.31 16 36 H 0.14 4.18 7.95 -2.39 -0.02 4.16 16 37 H 0.12 4.96 8.14 -2.39 -0.02 4.95 16 38 H 0.27 14.01 8.32 -92.71 -0.77 13.24 16 39 H 0.10 3.56 8.09 -2.39 -0.02 3.54 16 40 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 41 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.09 2.25 6.85 -2.39 -0.02 2.23 16 44 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.54 5.40 -2.38 -0.01 1.52 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -76.03 388.45 2.03 -74.00 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.95 Total: 21.57 kcal Atomic # 6 Polarization: -56.48 SS G_CDS: 5.07 Total: -51.41 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -1.38 Total: -79.23 kcal Atomic # 8 Polarization: -116.50 SS G_CDS: -4.38 Total: -120.88 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 109.26 SS G_CDS: -0.26 Total: 109.00 kcal Total: -76.03 2.03 -74.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451447166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.819 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds