Wall clock time and date at job start Wed Apr 1 2020 03:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34230 * 117.00107 * 2 1 4 4 O 1.20827 * 119.99777 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99876 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.46847 * 289.94243 * 5 3 2 7 7 C 1.52996 * 109.46938 * 49.93878 * 5 3 2 8 8 N 1.46496 * 109.46915 * 169.93979 * 5 3 2 9 9 C 1.46505 * 120.00080 * 284.91893 * 8 5 3 10 10 C 1.53785 * 113.61254 * 172.62774 * 9 8 5 11 11 C 1.53778 * 87.07747 * 220.01931 * 10 9 8 12 12 C 1.53783 * 113.61094 * 75.13001 * 9 8 5 13 13 S 1.65601 * 120.00189 * 104.92137 * 8 5 3 14 14 O 1.42093 * 104.28005 * 153.92598 * 13 8 5 15 15 O 1.42105 * 104.27427 * 26.06852 * 13 8 5 16 16 C 1.81400 * 104.44976 * 270.00208 * 13 8 5 17 17 C 1.52998 * 109.47371 * 174.05332 * 16 13 8 18 18 C 1.50706 * 115.54749 * 64.92498 * 17 16 13 19 19 H 1.08004 * 120.00025 * 271.03962 * 18 17 16 20 20 C 1.37875 * 119.99956 * 91.04805 * 18 17 16 21 21 N 1.31516 * 120.00081 * 172.81231 * 20 18 17 22 22 Si 1.86804 * 120.00096 * 352.80175 * 20 18 17 23 23 H 1.48503 * 109.46749 * 93.73140 * 22 20 18 24 24 H 1.48492 * 109.47124 * 213.73045 * 22 20 18 25 25 H 1.48500 * 109.46975 * 333.73391 * 22 20 18 26 26 C 1.52994 * 117.49963 * 279.25596 * 17 16 13 27 27 C 1.52995 * 117.50126 * 210.59667 * 17 16 13 28 28 H 1.08996 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46588 * 300.00429 * 1 2 3 30 30 H 1.09001 * 109.46735 * 59.99766 * 1 2 3 31 31 H 1.09002 * 109.47456 * 62.76570 * 7 5 3 32 32 H 1.09006 * 109.47029 * 182.76321 * 7 5 3 33 33 H 1.09004 * 109.47596 * 302.76464 * 7 5 3 34 34 H 1.08996 * 112.84557 * 303.93597 * 9 8 5 35 35 H 1.08996 * 113.61507 * 334.57047 * 10 9 8 36 36 H 1.08999 * 113.61183 * 105.47128 * 10 9 8 37 37 H 1.08998 * 113.61932 * 270.88229 * 11 10 9 38 38 H 1.09001 * 113.61056 * 139.98546 * 11 10 9 39 39 H 1.08994 * 113.61700 * 254.52764 * 12 9 8 40 40 H 1.08996 * 113.61708 * 25.35369 * 12 9 8 41 41 H 1.09008 * 109.46736 * 294.04864 * 16 13 8 42 42 H 1.09000 * 109.47579 * 54.04835 * 16 13 8 43 43 H 0.97002 * 120.00317 * 179.97438 * 21 20 18 44 44 H 1.09002 * 117.49593 * 0.02562 * 26 17 16 45 45 H 1.09001 * 117.49900 * 145.01859 * 26 17 16 46 46 H 1.09002 * 117.50137 * 214.98469 * 27 17 16 47 47 H 1.09002 * 117.49929 * 359.96959 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5665 1.2748 0.0006 6 1 3.9472 0.9440 0.9669 7 6 4.1247 0.3741 -1.1030 8 7 3.9830 2.6584 -0.2408 9 6 3.8899 3.2271 -1.5878 10 6 4.1929 4.7337 -1.6426 11 6 3.0386 4.8492 -2.6520 12 6 2.4538 3.5804 -2.0092 13 16 4.5593 3.5796 1.0088 14 8 5.4010 4.5362 0.3799 15 8 5.0857 2.6328 1.9285 16 6 3.0853 4.3830 1.6962 17 6 3.4678 5.1544 2.9609 18 6 4.4065 6.3153 2.7552 19 1 5.4745 6.1590 2.7907 20 6 3.9017 7.5769 2.5218 21 7 4.7117 8.6124 2.4830 22 14 2.0675 7.8156 2.2604 23 1 1.4230 8.1538 3.5548 24 1 1.8450 8.9199 1.2930 25 1 1.4766 6.5625 1.7257 26 6 3.6031 4.3581 4.2603 27 6 2.4061 5.2895 4.0542 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.7835 0.7345 -2.0735 32 1 5.2141 0.3929 -1.0710 33 1 3.7743 -0.6468 -0.9509 34 1 4.4323 2.6438 -2.3318 35 1 4.0042 5.2516 -0.7023 36 1 5.1692 4.9675 -2.0671 37 1 3.3487 4.7107 -3.6877 38 1 2.4207 5.7357 -2.5091 39 1 2.0261 2.8833 -2.7297 40 1 1.7892 3.7817 -1.1690 41 1 2.6714 5.0731 0.9609 42 1 2.3409 3.6261 1.9434 43 1 4.3566 9.5000 2.3184 44 1 3.4201 3.2845 4.2140 45 1 4.3709 4.6741 4.9665 46 1 2.3867 6.2179 4.6250 47 1 1.4349 4.8292 3.8723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451456700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:05 Heat of formation + Delta-G solvation = -83.564944 kcal Electronic energy + Delta-G solvation = -31675.309880 eV Core-core repulsion = 27567.469036 eV Total energy + Delta-G solvation = -4107.840844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77767 -39.02494 -37.12602 -36.88953 -36.31189 -35.25949 -35.03188 -32.15524 -30.44614 -28.50444 -27.85836 -25.61256 -25.45605 -25.35191 -23.64024 -21.72028 -20.90585 -20.19182 -19.08094 -18.40045 -17.81066 -17.37118 -17.04299 -16.63091 -16.15854 -15.85285 -15.35102 -15.16279 -14.88061 -14.43092 -14.08444 -13.92797 -13.62032 -13.50122 -13.00146 -12.94987 -12.68144 -12.58956 -12.48184 -12.31218 -12.19220 -12.00094 -11.64762 -11.50794 -11.44345 -11.25573 -11.18515 -10.96800 -10.90175 -10.85625 -10.62966 -10.50220 -10.33565 -10.10816 -10.04047 -9.86450 -9.72171 -9.13880 -9.02057 -8.64116 -8.43471 -6.16911 -4.23805 0.81942 2.08017 2.45690 3.13560 3.23954 3.34439 3.39522 4.30931 4.36656 4.44520 4.55901 4.63542 4.77425 4.81656 4.86261 4.91575 4.93146 4.99858 5.03416 5.07335 5.10983 5.29766 5.34090 5.40997 5.55285 5.64490 5.71595 5.79582 5.84924 5.93654 5.98850 6.04781 6.06570 6.10754 6.24003 6.32581 6.33106 6.43589 6.49642 6.51169 6.68611 6.84079 6.90501 7.06928 7.60702 7.65816 8.36848 8.88134 9.44985 10.94298 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.005346 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.362917 B = 5235.976568 C = 5584.169755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.440 3.560 4 O -0.486 6.486 5 C 0.156 3.844 6 H 0.141 0.859 7 C -0.150 4.150 8 N -0.981 5.981 9 C 0.124 3.876 10 C -0.140 4.140 11 C -0.152 4.152 12 C -0.156 4.156 13 S 2.607 3.393 14 O -0.925 6.925 15 O -0.968 6.968 16 C -0.566 4.566 17 C 0.001 3.999 18 C -0.509 4.509 19 H 0.087 0.913 20 C 0.091 3.909 21 N -0.881 5.881 22 Si 0.869 3.131 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.255 1.255 26 C -0.178 4.178 27 C -0.184 4.184 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.106 0.894 43 H 0.267 0.733 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 -17.211 -9.338 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.280 3.720 4 O -0.371 6.371 5 C 0.047 3.953 6 H 0.158 0.842 7 C -0.209 4.209 8 N -0.815 5.815 9 C 0.019 3.981 10 C -0.178 4.178 11 C -0.190 4.190 12 C -0.194 4.194 13 S 2.706 3.294 14 O -0.915 6.915 15 O -0.959 6.959 16 C -0.698 4.698 17 C -0.002 4.002 18 C -0.546 4.546 19 H 0.105 0.895 20 C -0.114 4.114 21 N -0.516 5.516 22 Si 0.696 3.304 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.179 1.179 26 C -0.216 4.216 27 C -0.223 4.223 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.760 -16.656 -9.148 20.169 hybrid contribution -2.167 0.445 -0.191 2.221 sum -8.927 -16.210 -9.339 20.729 Atomic orbital electron populations 1.23254 0.76557 1.03494 1.02624 1.86506 1.23228 1.33458 1.84224 1.24652 0.92817 0.81634 0.72897 1.90629 1.66871 1.35911 1.43732 1.20372 0.86244 0.84372 1.04292 0.84205 1.21999 1.02580 0.98945 0.97384 1.58052 1.80273 1.20473 1.22682 1.22529 0.97638 0.94742 0.83231 1.23592 0.99797 0.92953 1.01429 1.22879 0.98813 0.98596 0.98689 1.23656 0.96938 0.97399 1.01449 1.05343 0.77356 0.73905 0.72804 1.93633 1.63548 1.61086 1.73257 1.93475 1.77229 1.61550 1.63625 1.30297 1.18425 1.10747 1.10350 1.18905 0.99487 0.97797 0.83991 1.20319 0.93396 0.89546 1.51355 0.89506 1.24914 0.97630 0.95527 0.93282 1.69899 1.35398 0.99183 1.47159 0.86984 0.86374 0.78471 0.78523 1.20219 1.21662 1.17869 1.23029 1.00780 0.95744 1.02000 1.22960 0.92751 1.01481 1.05065 0.88242 0.91853 0.91957 0.91435 0.90271 0.90053 0.88097 0.87677 0.89438 0.90344 0.90914 0.92219 0.87323 0.85453 0.87536 0.92298 0.90232 0.88558 0.88886 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.82 10.10 -39.26 -0.40 -4.21 16 3 C 0.44 5.61 7.03 36.01 0.25 5.86 16 4 O -0.49 -7.22 12.10 -18.75 -0.23 -7.45 16 5 C 0.16 1.97 3.20 -69.09 -0.22 1.75 16 6 H 0.14 1.76 6.73 -51.93 -0.35 1.41 16 7 C -0.15 -1.38 8.70 37.16 0.32 -1.06 16 8 N -0.98 -15.03 2.50 -100.65 -0.25 -15.29 16 9 C 0.12 1.73 3.57 -67.11 -0.24 1.49 16 10 C -0.14 -2.26 5.52 -25.92 -0.14 -2.41 16 11 C -0.15 -2.01 8.08 -25.92 -0.21 -2.22 16 12 C -0.16 -2.07 6.32 -25.92 -0.16 -2.24 16 13 S 2.61 52.16 4.56 -107.50 -0.49 51.67 16 14 O -0.93 -21.16 13.57 -57.54 -0.78 -21.94 16 15 O -0.97 -20.38 16.49 -57.54 -0.95 -21.33 16 16 C -0.57 -11.75 5.54 37.16 0.21 -11.54 16 17 C 0.00 0.02 0.80 -155.66 -0.13 -0.10 16 18 C -0.51 -14.25 8.75 -34.44 -0.30 -14.55 16 19 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 20 C 0.09 2.61 5.46 -17.82 -0.10 2.51 16 21 N -0.88 -26.63 13.96 55.43 0.77 -25.85 16 22 Si 0.87 21.38 24.90 -169.99 -4.23 17.14 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.25 -5.90 5.77 56.52 0.33 -5.58 16 26 C -0.18 -3.77 9.96 -26.70 -0.27 -4.03 16 27 C -0.18 -3.95 7.62 -26.70 -0.20 -4.15 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.07 0.57 6.82 -51.93 -0.35 0.22 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 34 H 0.10 1.14 7.02 -51.93 -0.36 0.78 16 35 H 0.11 2.04 4.76 -51.93 -0.25 1.80 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 1.67 5.86 -51.93 -0.30 1.37 16 41 H 0.13 2.68 5.91 -51.92 -0.31 2.37 16 42 H 0.11 1.96 7.51 -51.92 -0.39 1.57 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 46 H 0.09 2.06 7.20 -51.93 -0.37 1.69 16 47 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -33.73 374.85 -8.41 -42.13 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.38 Total: 8.82 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -0.12 Total: -29.34 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.52 Total: -41.14 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -2.35 Total: -54.93 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.23 Total: 17.14 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.49 Total: 51.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.73 -8.41 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451456700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.431 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds