Wall clock time and date at job start Wed Apr 1 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34230 * 117.00107 * 2 1 4 4 O 1.20827 * 119.99777 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99876 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.46847 * 289.94243 * 5 3 2 7 7 C 1.52996 * 109.46938 * 49.93878 * 5 3 2 8 8 N 1.46496 * 109.46915 * 169.93979 * 5 3 2 9 9 C 1.46505 * 120.00080 * 284.91893 * 8 5 3 10 10 C 1.53785 * 113.61254 * 172.62774 * 9 8 5 11 11 C 1.53778 * 87.07747 * 220.01931 * 10 9 8 12 12 C 1.53783 * 113.61094 * 75.13001 * 9 8 5 13 13 S 1.65601 * 120.00189 * 104.92137 * 8 5 3 14 14 O 1.42093 * 104.28005 * 153.92598 * 13 8 5 15 15 O 1.42105 * 104.27427 * 26.06852 * 13 8 5 16 16 C 1.81400 * 104.44976 * 270.00208 * 13 8 5 17 17 C 1.52998 * 109.47371 * 174.05332 * 16 13 8 18 18 C 1.50706 * 115.54749 * 64.92498 * 17 16 13 19 19 H 1.08004 * 120.00025 * 271.03962 * 18 17 16 20 20 C 1.37875 * 119.99956 * 91.04805 * 18 17 16 21 21 N 1.31516 * 120.00081 * 172.81231 * 20 18 17 22 22 Si 1.86804 * 120.00096 * 352.80175 * 20 18 17 23 23 H 1.48503 * 109.46749 * 93.73140 * 22 20 18 24 24 H 1.48492 * 109.47124 * 213.73045 * 22 20 18 25 25 H 1.48500 * 109.46975 * 333.73391 * 22 20 18 26 26 C 1.52994 * 117.49963 * 279.25596 * 17 16 13 27 27 C 1.52995 * 117.50126 * 210.59667 * 17 16 13 28 28 H 1.08996 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46588 * 300.00429 * 1 2 3 30 30 H 1.09001 * 109.46735 * 59.99766 * 1 2 3 31 31 H 1.09002 * 109.47456 * 62.76570 * 7 5 3 32 32 H 1.09006 * 109.47029 * 182.76321 * 7 5 3 33 33 H 1.09004 * 109.47596 * 302.76464 * 7 5 3 34 34 H 1.08996 * 112.84557 * 303.93597 * 9 8 5 35 35 H 1.08996 * 113.61507 * 334.57047 * 10 9 8 36 36 H 1.08999 * 113.61183 * 105.47128 * 10 9 8 37 37 H 1.08998 * 113.61932 * 270.88229 * 11 10 9 38 38 H 1.09001 * 113.61056 * 139.98546 * 11 10 9 39 39 H 1.08994 * 113.61700 * 254.52764 * 12 9 8 40 40 H 1.08996 * 113.61708 * 25.35369 * 12 9 8 41 41 H 1.09008 * 109.46736 * 294.04864 * 16 13 8 42 42 H 1.09000 * 109.47579 * 54.04835 * 16 13 8 43 43 H 0.97002 * 120.00317 * 179.97438 * 21 20 18 44 44 H 1.09002 * 117.49593 * 0.02562 * 26 17 16 45 45 H 1.09001 * 117.49900 * 145.01859 * 26 17 16 46 46 H 1.09002 * 117.50137 * 214.98469 * 27 17 16 47 47 H 1.09002 * 117.49929 * 359.96959 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5665 1.2748 0.0006 6 1 3.9472 0.9440 0.9669 7 6 4.1247 0.3741 -1.1030 8 7 3.9830 2.6584 -0.2408 9 6 3.8899 3.2271 -1.5878 10 6 4.1929 4.7337 -1.6426 11 6 3.0386 4.8492 -2.6520 12 6 2.4538 3.5804 -2.0092 13 16 4.5593 3.5796 1.0088 14 8 5.4010 4.5362 0.3799 15 8 5.0857 2.6328 1.9285 16 6 3.0853 4.3830 1.6962 17 6 3.4678 5.1544 2.9609 18 6 4.4065 6.3153 2.7552 19 1 5.4745 6.1590 2.7907 20 6 3.9017 7.5769 2.5218 21 7 4.7117 8.6124 2.4830 22 14 2.0675 7.8156 2.2604 23 1 1.4230 8.1538 3.5548 24 1 1.8450 8.9199 1.2930 25 1 1.4766 6.5625 1.7257 26 6 3.6031 4.3581 4.2603 27 6 2.4061 5.2895 4.0542 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.7835 0.7345 -2.0735 32 1 5.2141 0.3929 -1.0710 33 1 3.7743 -0.6468 -0.9509 34 1 4.4323 2.6438 -2.3318 35 1 4.0042 5.2516 -0.7023 36 1 5.1692 4.9675 -2.0671 37 1 3.3487 4.7107 -3.6877 38 1 2.4207 5.7357 -2.5091 39 1 2.0261 2.8833 -2.7297 40 1 1.7892 3.7817 -1.1690 41 1 2.6714 5.0731 0.9609 42 1 2.3409 3.6261 1.9434 43 1 4.3566 9.5000 2.3184 44 1 3.4201 3.2845 4.2140 45 1 4.3709 4.6741 4.9665 46 1 2.3867 6.2179 4.6250 47 1 1.4349 4.8292 3.8723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451456700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:04 Heat of formation + Delta-G solvation = -106.705868 kcal Electronic energy + Delta-G solvation = -31676.313346 eV Core-core repulsion = 27567.469036 eV Total energy + Delta-G solvation = -4108.844309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72198 -40.12695 -38.92158 -38.26973 -37.39446 -36.89973 -36.13297 -34.33107 -31.44339 -30.16919 -28.53192 -27.65865 -26.55398 -26.44035 -24.61785 -23.43962 -21.91795 -21.57804 -20.75849 -19.79486 -19.02140 -18.46038 -18.34154 -18.16635 -17.27909 -17.07287 -16.97736 -16.66538 -16.30361 -15.82494 -15.64419 -14.90787 -14.86579 -14.79758 -14.60478 -14.35638 -14.07834 -13.95228 -13.60245 -13.36732 -13.35564 -13.27234 -12.99075 -12.91647 -12.76056 -12.64626 -12.50318 -12.48745 -12.42990 -12.13637 -12.03124 -11.78479 -11.73388 -11.67507 -11.64220 -11.13077 -11.08886 -10.99271 -10.77813 -10.40249 -10.00674 -8.36861 -6.48014 -0.71405 1.13882 1.27844 1.32081 1.43847 1.47703 1.93459 2.29944 2.80954 2.94675 3.06861 3.16140 3.27722 3.65324 3.73571 3.77552 3.85410 3.95963 3.98974 4.03280 4.10452 4.26534 4.28842 4.36532 4.39339 4.42673 4.56855 4.59946 4.76212 4.76321 4.82895 4.85422 4.89795 4.94447 4.97969 5.07030 5.13116 5.18527 5.25369 5.29205 5.36659 5.38278 5.42682 5.57626 5.74243 6.15598 6.61996 6.74939 7.23919 8.79057 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.005346 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.362917 B = 5235.976568 C = 5584.169755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.445 3.555 4 O -0.510 6.510 5 C 0.145 3.855 6 H 0.139 0.861 7 C -0.147 4.147 8 N -0.974 5.974 9 C 0.127 3.873 10 C -0.162 4.162 11 C -0.141 4.141 12 C -0.146 4.146 13 S 2.616 3.384 14 O -0.966 6.966 15 O -0.985 6.985 16 C -0.563 4.563 17 C -0.031 4.031 18 C -0.509 4.509 19 H 0.035 0.965 20 C 0.036 3.964 21 N -0.934 5.934 22 Si 0.925 3.075 23 H -0.262 1.262 24 H -0.291 1.291 25 H -0.230 1.230 26 C -0.171 4.171 27 C -0.172 4.172 28 H 0.132 0.868 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.269 0.731 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 -20.404 -10.789 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.286 3.714 4 O -0.398 6.398 5 C 0.037 3.963 6 H 0.156 0.844 7 C -0.205 4.205 8 N -0.810 5.810 9 C 0.023 3.977 10 C -0.200 4.200 11 C -0.179 4.179 12 C -0.185 4.185 13 S 2.715 3.285 14 O -0.956 6.956 15 O -0.975 6.975 16 C -0.695 4.695 17 C -0.034 4.034 18 C -0.546 4.546 19 H 0.053 0.947 20 C -0.164 4.164 21 N -0.572 5.572 22 Si 0.749 3.251 23 H -0.187 1.187 24 H -0.218 1.218 25 H -0.153 1.153 26 C -0.208 4.208 27 C -0.211 4.211 28 H 0.150 0.850 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.151 0.849 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.695 -19.886 -10.575 24.521 hybrid contribution -1.173 1.340 0.263 1.800 sum -10.869 -18.546 -10.311 23.841 Atomic orbital electron populations 1.23543 0.74925 1.05610 1.02447 1.86492 1.24703 1.32071 1.83628 1.24523 0.92673 0.81877 0.72338 1.90633 1.67343 1.36762 1.45045 1.20712 0.86841 0.82972 1.05772 0.84392 1.22060 1.02758 0.99243 0.96445 1.57638 1.80306 1.21233 1.21812 1.22790 0.98549 0.93428 0.82976 1.23574 1.00664 0.95030 1.00763 1.22904 0.96988 0.98515 0.99473 1.23538 0.96034 0.97696 1.01242 1.04744 0.77157 0.73505 0.73119 1.93598 1.65185 1.62758 1.74077 1.93440 1.77743 1.61627 1.64738 1.30174 1.19524 1.11052 1.08749 1.18830 1.00664 0.97768 0.86119 1.20378 0.92037 0.91614 1.50610 0.94679 1.25766 1.02559 0.95061 0.93017 1.70042 1.37846 0.99870 1.49466 0.86074 0.80681 0.79294 0.79075 1.18677 1.21808 1.15308 1.23107 1.00552 0.97254 0.99867 1.23038 0.93848 1.01320 1.02858 0.85031 0.92456 0.91765 0.90237 0.89927 0.87769 0.84654 0.91527 0.90316 0.87313 0.91663 0.89582 0.89269 0.86074 0.84888 0.92164 0.87387 0.89478 0.89892 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -6.26 10.10 -51.41 -0.52 -6.77 16 3 C 0.44 9.99 7.03 71.24 0.50 10.49 16 4 O -0.51 -13.82 12.10 21.96 0.27 -13.55 16 5 C 0.15 3.29 3.20 44.25 0.14 3.43 16 6 H 0.14 3.19 6.73 -2.39 -0.02 3.17 16 7 C -0.15 -2.15 8.70 71.98 0.63 -1.52 16 8 N -0.97 -28.48 2.50 -472.36 -1.18 -29.66 16 9 C 0.13 3.29 3.57 45.52 0.16 3.46 16 10 C -0.16 -5.28 5.52 31.12 0.17 -5.11 16 11 C -0.14 -3.48 8.08 31.12 0.25 -3.23 16 12 C -0.15 -3.51 6.32 31.12 0.20 -3.32 16 13 S 2.62 105.89 4.56 -56.49 -0.26 105.63 16 14 O -0.97 -46.57 13.57 -127.65 -1.73 -48.30 16 15 O -0.99 -41.58 16.49 -127.65 -2.11 -43.69 16 16 C -0.56 -23.08 5.54 71.98 0.40 -22.68 16 17 C -0.03 -1.47 0.80 -52.93 -0.04 -1.52 16 18 C -0.51 -29.86 8.75 25.60 0.22 -29.63 16 19 H 0.03 2.35 8.06 -2.91 -0.02 2.32 16 20 C 0.04 2.12 5.46 84.65 0.46 2.58 16 21 N -0.93 -59.46 13.96 21.45 0.30 -59.16 16 22 Si 0.93 44.37 24.90 68.60 1.71 46.08 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.23 -10.04 5.77 99.48 0.57 -9.47 16 26 C -0.17 -7.05 9.96 30.61 0.30 -6.75 16 27 C -0.17 -7.05 7.62 30.61 0.23 -6.82 16 28 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.08 0.99 6.82 -2.39 -0.02 0.97 16 32 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.09 7.87 -2.39 -0.02 1.07 16 34 H 0.14 2.60 7.02 -2.39 -0.02 2.58 16 35 H 0.07 2.72 4.76 -2.39 -0.01 2.71 16 36 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 2.57 5.86 -2.39 -0.01 2.56 16 41 H 0.12 5.09 5.91 -2.39 -0.01 5.07 16 42 H 0.13 4.62 7.51 -2.39 -0.02 4.60 16 43 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 44 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 45 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 46 H 0.08 3.56 7.20 -2.39 -0.02 3.54 16 47 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 Total: -1.00 -78.08 374.85 2.14 -75.94 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.84 Total: 32.55 kcal Atomic # 6 Polarization: -63.89 SS G_CDS: 4.83 Total: -59.06 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -0.88 Total: -88.82 kcal Atomic # 8 Polarization: -108.23 SS G_CDS: -4.09 Total: -112.32 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.71 Total: 46.08 kcal Atomic # 16 Polarization: 105.89 SS G_CDS: -0.26 Total: 105.63 kcal Total: -78.08 2.14 -75.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451456700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.768 kcal (2) G-P(sol) polarization free energy of solvation -78.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds