Wall clock time and date at job start Wed Apr 1 2020 03:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47427 * 2 1 4 4 C 1.34231 * 117.00223 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99954 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99696 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47531 * 299.99301 * 6 4 3 8 8 C 1.52997 * 109.47686 * 59.99977 * 6 4 3 9 9 N 1.46507 * 109.46740 * 179.97438 * 6 4 3 10 10 C 1.46494 * 120.00023 * 301.61579 * 9 6 4 11 11 C 1.53007 * 117.49943 * 3.21238 * 10 9 6 12 12 C 1.52995 * 117.50298 * 294.55329 * 10 9 6 13 13 S 1.65597 * 119.99822 * 121.62099 * 9 6 4 14 14 O 1.42103 * 104.27541 * 153.92531 * 13 9 6 15 15 O 1.42100 * 104.28283 * 26.07239 * 13 9 6 16 16 C 1.81400 * 104.45005 * 269.99751 * 13 9 6 17 17 C 1.53000 * 109.47225 * 174.08462 * 16 13 9 18 18 C 1.50699 * 115.55917 * 40.16943 * 17 16 13 19 19 H 1.08006 * 120.00136 * 265.77715 * 18 17 16 20 20 C 1.37877 * 120.00277 * 85.78565 * 18 17 16 21 21 N 1.31515 * 120.00216 * 179.31747 * 20 18 17 22 22 Si 1.86795 * 119.99868 * 359.31193 * 20 18 17 23 23 H 1.48507 * 109.47187 * 90.62723 * 22 20 18 24 24 H 1.48504 * 109.47410 * 210.62477 * 22 20 18 25 25 H 1.48497 * 109.47457 * 330.62757 * 22 20 18 26 26 C 1.53005 * 117.49790 * 185.85365 * 17 16 13 27 27 C 1.53001 * 60.03056 * 107.48138 * 26 17 16 28 28 H 1.08997 * 109.46839 * 59.99860 * 1 2 3 29 29 H 1.08994 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46923 * 299.99945 * 1 2 3 31 31 H 1.09005 * 109.47320 * 240.00031 * 2 1 3 32 32 H 1.08999 * 109.47326 * 120.00328 * 2 1 3 33 33 H 1.08998 * 109.48063 * 172.34784 * 8 6 4 34 34 H 1.09000 * 109.46879 * 292.35037 * 8 6 4 35 35 H 1.09006 * 109.46868 * 52.34712 * 8 6 4 36 36 H 1.09005 * 115.55105 * 148.87758 * 10 9 6 37 37 H 1.08994 * 117.49524 * 359.97438 * 11 10 9 38 38 H 1.09003 * 117.49585 * 145.01370 * 11 10 9 39 39 H 1.09004 * 117.50037 * 214.98017 * 12 10 9 40 40 H 1.09001 * 117.49717 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.46938 * 54.08484 * 16 13 9 42 42 H 1.09000 * 109.47091 * 294.08537 * 16 13 9 43 43 H 0.97001 * 119.99988 * 179.97438 * 21 20 18 44 44 H 1.08999 * 117.49699 * 214.97971 * 26 17 16 45 45 H 1.08993 * 117.49628 * 359.97438 * 26 17 16 46 46 H 1.09001 * 117.50451 * 107.50196 * 27 26 17 47 47 H 1.08999 * 117.49812 * 252.52512 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5845 3.4701 -0.8896 8 6 3.4498 3.6837 1.2498 9 7 5.3838 2.8606 -0.0001 10 6 6.0805 2.1577 1.0799 11 6 5.2227 1.4605 2.1378 12 6 5.9762 2.7459 2.4884 13 16 6.2499 3.5687 -1.2211 14 8 7.5130 3.8530 -0.6355 15 8 5.4074 4.6132 -1.6884 16 6 6.4083 2.2688 -2.4764 17 6 7.0690 2.8475 -3.7293 18 6 8.2013 3.8105 -3.4814 19 1 8.0100 4.8730 -3.4519 20 6 9.4817 3.3352 -3.2923 21 7 10.4721 4.1763 -3.0893 22 14 9.8096 1.4965 -3.3243 23 1 10.1391 1.0765 -4.7101 24 1 10.9503 1.1813 -2.4272 25 1 8.6002 0.7698 -2.8613 26 6 7.1684 1.9414 -4.9581 27 6 6.1750 3.1050 -4.9449 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.9712 4.6382 1.3213 34 1 2.3762 3.8601 1.1847 35 1 3.6666 3.0843 2.1341 36 1 7.0211 1.6823 0.8015 37 1 4.1400 1.5253 2.0304 38 1 5.5990 0.5267 2.5555 39 1 6.8480 2.6573 3.1367 40 1 5.3895 3.6563 2.6114 41 1 5.4196 1.8868 -2.7306 42 1 7.0215 1.4576 -2.0841 43 1 11.3728 3.8418 -2.9560 44 1 8.0528 2.0419 -5.5873 45 1 6.7635 0.9329 -4.8738 46 1 6.4058 3.9709 -5.5653 47 1 5.1165 2.8620 -4.8515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451457637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:33 Heat of formation + Delta-G solvation = -79.130601 kcal Electronic energy + Delta-G solvation = -30901.194133 eV Core-core repulsion = 26793.545577 eV Total energy + Delta-G solvation = -4107.648556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99075 -38.48913 -37.10108 -36.51350 -36.32728 -35.05165 -33.91714 -32.18645 -31.99010 -30.39295 -28.50309 -25.52596 -25.24480 -23.29226 -22.39304 -21.95379 -21.71320 -20.79973 -19.48358 -18.80352 -17.93404 -17.20559 -16.89665 -16.67344 -16.49924 -15.36080 -15.28966 -14.84410 -14.78527 -14.48906 -14.19805 -13.84388 -13.67182 -13.51941 -13.12276 -13.04681 -12.97896 -12.63115 -12.59986 -12.47989 -12.21122 -11.85635 -11.58655 -11.35327 -11.32345 -11.28318 -11.25561 -11.12140 -10.96771 -10.78386 -10.73567 -10.61268 -10.42973 -10.40342 -10.17704 -9.97247 -9.71144 -9.15569 -8.79361 -8.65590 -8.44385 -6.18387 -4.30873 0.88347 2.06532 2.38895 3.17094 3.24473 3.33723 3.35399 3.90693 4.35049 4.37869 4.53064 4.62294 4.64075 4.69150 4.73618 4.77015 4.87442 4.93031 4.98569 5.03496 5.07424 5.13832 5.20181 5.35193 5.46483 5.48043 5.53647 5.63369 5.65909 5.70937 5.72620 5.86576 6.00808 6.03626 6.08032 6.11899 6.21543 6.25021 6.30080 6.41285 6.58356 6.67683 6.83087 7.05246 7.58170 7.63950 8.34445 8.84215 9.43432 10.92899 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.004515 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.667724 B = 6200.439117 C = 6859.136296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.446 3.554 5 O -0.483 6.483 6 C 0.156 3.844 7 H 0.139 0.861 8 C -0.169 4.169 9 N -0.968 5.968 10 C 0.102 3.898 11 C -0.176 4.176 12 C -0.199 4.199 13 S 2.623 3.377 14 O -0.914 6.914 15 O -0.960 6.960 16 C -0.581 4.581 17 C 0.008 3.992 18 C -0.537 4.537 19 H 0.088 0.912 20 C 0.104 3.896 21 N -0.870 5.870 22 Si 0.872 3.128 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.257 1.257 26 C -0.187 4.187 27 C -0.173 4.173 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.269 0.731 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 -8.225 9.548 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.286 3.714 5 O -0.368 6.368 6 C 0.047 3.953 7 H 0.156 0.844 8 C -0.227 4.227 9 N -0.800 5.800 10 C -0.005 4.005 11 C -0.214 4.214 12 C -0.238 4.238 13 S 2.721 3.279 14 O -0.904 6.904 15 O -0.951 6.951 16 C -0.712 4.712 17 C 0.005 3.995 18 C -0.575 4.575 19 H 0.106 0.894 20 C -0.103 4.103 21 N -0.504 5.504 22 Si 0.699 3.301 23 H -0.200 1.200 24 H -0.214 1.214 25 H -0.181 1.181 26 C -0.226 4.226 27 C -0.210 4.210 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.292 -7.616 9.601 21.194 hybrid contribution 0.183 -2.082 -0.356 2.120 sum -17.110 -9.697 9.244 21.731 Atomic orbital electron populations 1.21802 0.92610 1.02906 1.03602 1.23030 0.95346 0.80362 1.02645 1.86521 1.24440 1.32319 1.84165 1.24282 0.80749 0.93358 0.73044 1.90704 1.60081 1.42495 1.43546 1.20358 0.81219 0.89641 1.04114 0.84382 1.22486 1.02553 1.01536 0.96117 1.57992 1.11861 1.71098 1.39008 1.21205 0.97217 0.99139 0.82911 1.23378 0.98533 0.96764 1.02759 1.23694 1.03358 0.97586 0.99197 1.04979 0.73483 0.75745 0.73731 1.93602 1.40198 1.82027 1.74591 1.93490 1.68477 1.51638 1.81500 1.30357 1.07433 1.17746 1.15706 1.18786 0.98046 0.98745 0.83885 1.20407 0.90056 0.93511 1.53481 0.89424 1.24890 0.95678 0.97647 0.92091 1.69862 1.00508 1.34931 1.45091 0.86979 0.78485 0.86247 0.78344 1.20006 1.21376 1.18110 1.22969 1.01657 0.93940 1.04030 1.22946 0.94449 0.99956 1.03642 0.91359 0.90335 0.91458 0.91193 0.91267 0.89878 0.90218 0.90420 0.84863 0.88923 0.88278 0.88042 0.87914 0.87925 0.85733 0.92099 0.88940 0.90786 0.88726 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.54 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.99 10.15 -39.26 -0.40 -4.39 16 4 C 0.45 5.86 5.46 36.00 0.20 6.05 16 5 O -0.48 -7.27 13.46 -18.75 -0.25 -7.53 16 6 C 0.16 2.11 2.99 -69.08 -0.21 1.90 16 7 H 0.14 1.82 6.91 -51.93 -0.36 1.46 16 8 C -0.17 -1.80 7.76 37.16 0.29 -1.51 16 9 N -0.97 -15.84 2.75 -101.51 -0.28 -16.12 16 10 C 0.10 1.54 5.16 -67.93 -0.35 1.19 16 11 C -0.18 -2.14 7.55 -26.69 -0.20 -2.34 16 12 C -0.20 -2.48 9.64 -26.70 -0.26 -2.73 16 13 S 2.62 55.45 4.60 -107.50 -0.49 54.96 16 14 O -0.91 -22.82 16.36 -57.54 -0.94 -23.76 16 15 O -0.96 -21.41 16.59 -57.54 -0.95 -22.36 16 16 C -0.58 -12.08 6.08 37.16 0.23 -11.86 16 17 C 0.01 0.19 1.10 -155.62 -0.17 0.02 16 18 C -0.54 -15.16 7.48 -34.44 -0.26 -15.42 16 19 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 20 C 0.10 3.02 5.47 -17.82 -0.10 2.92 16 21 N -0.87 -26.64 13.96 55.43 0.77 -25.87 16 22 Si 0.87 21.62 25.17 -169.99 -4.28 17.34 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.26 -5.92 5.28 56.52 0.30 -5.62 16 26 C -0.19 -3.97 7.67 -26.73 -0.20 -4.18 16 27 C -0.17 -3.56 9.89 -26.69 -0.26 -3.82 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.08 0.91 7.86 -51.93 -0.41 0.51 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.77 4.12 -51.93 -0.21 0.55 16 36 H 0.13 2.07 8.10 -51.93 -0.42 1.65 16 37 H 0.09 1.09 3.83 -51.93 -0.20 0.89 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.10 1.19 5.95 -51.93 -0.31 0.89 16 41 H 0.10 1.80 7.95 -51.92 -0.41 1.38 16 42 H 0.12 2.56 6.19 -51.92 -0.32 2.24 16 43 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.09 2.02 7.34 -51.93 -0.38 1.64 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 47 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -34.72 379.36 -9.13 -43.85 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.33 Total: 7.71 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: -0.69 Total: -29.57 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.49 Total: -41.98 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -2.55 Total: -58.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.28 Total: 17.34 kcal Atomic # 16 Polarization: 55.45 SS G_CDS: -0.49 Total: 54.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.72 -9.13 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451457637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.279 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds