Wall clock time and date at job start Wed Apr 1 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47427 * 2 1 4 4 C 1.34231 * 117.00223 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99954 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99696 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47531 * 299.99301 * 6 4 3 8 8 C 1.52997 * 109.47686 * 59.99977 * 6 4 3 9 9 N 1.46507 * 109.46740 * 179.97438 * 6 4 3 10 10 C 1.46494 * 120.00023 * 301.61579 * 9 6 4 11 11 C 1.53007 * 117.49943 * 3.21238 * 10 9 6 12 12 C 1.52995 * 117.50298 * 294.55329 * 10 9 6 13 13 S 1.65597 * 119.99822 * 121.62099 * 9 6 4 14 14 O 1.42103 * 104.27541 * 153.92531 * 13 9 6 15 15 O 1.42100 * 104.28283 * 26.07239 * 13 9 6 16 16 C 1.81400 * 104.45005 * 269.99751 * 13 9 6 17 17 C 1.53000 * 109.47225 * 174.08462 * 16 13 9 18 18 C 1.50699 * 115.55917 * 40.16943 * 17 16 13 19 19 H 1.08006 * 120.00136 * 265.77715 * 18 17 16 20 20 C 1.37877 * 120.00277 * 85.78565 * 18 17 16 21 21 N 1.31515 * 120.00216 * 179.31747 * 20 18 17 22 22 Si 1.86795 * 119.99868 * 359.31193 * 20 18 17 23 23 H 1.48507 * 109.47187 * 90.62723 * 22 20 18 24 24 H 1.48504 * 109.47410 * 210.62477 * 22 20 18 25 25 H 1.48497 * 109.47457 * 330.62757 * 22 20 18 26 26 C 1.53005 * 117.49790 * 185.85365 * 17 16 13 27 27 C 1.53001 * 60.03056 * 107.48138 * 26 17 16 28 28 H 1.08997 * 109.46839 * 59.99860 * 1 2 3 29 29 H 1.08994 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46923 * 299.99945 * 1 2 3 31 31 H 1.09005 * 109.47320 * 240.00031 * 2 1 3 32 32 H 1.08999 * 109.47326 * 120.00328 * 2 1 3 33 33 H 1.08998 * 109.48063 * 172.34784 * 8 6 4 34 34 H 1.09000 * 109.46879 * 292.35037 * 8 6 4 35 35 H 1.09006 * 109.46868 * 52.34712 * 8 6 4 36 36 H 1.09005 * 115.55105 * 148.87758 * 10 9 6 37 37 H 1.08994 * 117.49524 * 359.97438 * 11 10 9 38 38 H 1.09003 * 117.49585 * 145.01370 * 11 10 9 39 39 H 1.09004 * 117.50037 * 214.98017 * 12 10 9 40 40 H 1.09001 * 117.49717 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.46938 * 54.08484 * 16 13 9 42 42 H 1.09000 * 109.47091 * 294.08537 * 16 13 9 43 43 H 0.97001 * 119.99988 * 179.97438 * 21 20 18 44 44 H 1.08999 * 117.49699 * 214.97971 * 26 17 16 45 45 H 1.08993 * 117.49628 * 359.97438 * 26 17 16 46 46 H 1.09001 * 117.50451 * 107.50196 * 27 26 17 47 47 H 1.08999 * 117.49812 * 252.52512 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5845 3.4701 -0.8896 8 6 3.4498 3.6837 1.2498 9 7 5.3838 2.8606 -0.0001 10 6 6.0805 2.1577 1.0799 11 6 5.2227 1.4605 2.1378 12 6 5.9762 2.7459 2.4884 13 16 6.2499 3.5687 -1.2211 14 8 7.5130 3.8530 -0.6355 15 8 5.4074 4.6132 -1.6884 16 6 6.4083 2.2688 -2.4764 17 6 7.0690 2.8475 -3.7293 18 6 8.2013 3.8105 -3.4814 19 1 8.0100 4.8730 -3.4519 20 6 9.4817 3.3352 -3.2923 21 7 10.4721 4.1763 -3.0893 22 14 9.8096 1.4965 -3.3243 23 1 10.1391 1.0765 -4.7101 24 1 10.9503 1.1813 -2.4272 25 1 8.6002 0.7698 -2.8613 26 6 7.1684 1.9414 -4.9581 27 6 6.1750 3.1050 -4.9449 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.9712 4.6382 1.3213 34 1 2.3762 3.8601 1.1847 35 1 3.6666 3.0843 2.1341 36 1 7.0211 1.6823 0.8015 37 1 4.1400 1.5253 2.0304 38 1 5.5990 0.5267 2.5555 39 1 6.8480 2.6573 3.1367 40 1 5.3895 3.6563 2.6114 41 1 5.4196 1.8868 -2.7306 42 1 7.0215 1.4576 -2.0841 43 1 11.3728 3.8418 -2.9560 44 1 8.0528 2.0419 -5.5873 45 1 6.7635 0.9329 -4.8738 46 1 6.4058 3.9709 -5.5653 47 1 5.1165 2.8620 -4.8515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451457637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:32 Heat of formation + Delta-G solvation = -103.185298 kcal Electronic energy + Delta-G solvation = -30902.237223 eV Core-core repulsion = 26793.545577 eV Total energy + Delta-G solvation = -4108.691646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97848 -39.49824 -38.86245 -38.11329 -37.41024 -36.80652 -34.98925 -34.34737 -32.68317 -31.41381 -30.16902 -27.63923 -26.13097 -24.04725 -23.40365 -23.37108 -22.95910 -21.93830 -21.19529 -20.17776 -19.31316 -18.54629 -18.39610 -17.95101 -17.43388 -17.14883 -16.89032 -16.40725 -16.01385 -15.64235 -15.43759 -15.22754 -14.90477 -14.67874 -14.57996 -14.43264 -14.29485 -14.05156 -13.59294 -13.43429 -13.20221 -13.09318 -12.97861 -12.91852 -12.81583 -12.66840 -12.50718 -12.37490 -12.32199 -12.24946 -12.12915 -12.07195 -11.81259 -11.71010 -11.50477 -11.43756 -11.14883 -10.99594 -10.72198 -10.35014 -9.84826 -8.37908 -6.54302 -0.71411 1.07145 1.28815 1.30812 1.39174 1.43028 1.87224 2.29698 2.78689 2.95794 2.98167 3.07837 3.26281 3.37838 3.68415 3.78521 3.81848 3.90257 3.94570 4.04710 4.07699 4.12042 4.12608 4.20894 4.30942 4.38619 4.39679 4.56340 4.63567 4.65297 4.78305 4.80968 4.84547 4.90560 4.97153 4.97931 5.11012 5.12215 5.16828 5.19465 5.24598 5.42180 5.43604 5.48575 5.57508 6.13544 6.59728 6.68528 7.23348 8.78327 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.004515 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.667724 B = 6200.439117 C = 6859.136296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.354 6.354 4 C 0.454 3.546 5 O -0.504 6.504 6 C 0.143 3.857 7 H 0.139 0.861 8 C -0.167 4.167 9 N -0.960 5.960 10 C 0.063 3.937 11 C -0.150 4.150 12 C -0.193 4.193 13 S 2.627 3.373 14 O -0.967 6.967 15 O -0.984 6.984 16 C -0.576 4.576 17 C -0.031 4.031 18 C -0.536 4.536 19 H 0.034 0.966 20 C 0.047 3.953 21 N -0.927 5.927 22 Si 0.922 3.078 23 H -0.256 1.256 24 H -0.291 1.291 25 H -0.226 1.226 26 C -0.174 4.174 27 C -0.162 4.162 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.141 0.859 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.193 -11.327 10.099 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.295 3.705 5 O -0.391 6.391 6 C 0.035 3.965 7 H 0.157 0.843 8 C -0.225 4.225 9 N -0.794 5.794 10 C -0.044 4.044 11 C -0.189 4.189 12 C -0.232 4.232 13 S 2.727 3.273 14 O -0.957 6.957 15 O -0.974 6.974 16 C -0.708 4.708 17 C -0.034 4.034 18 C -0.573 4.573 19 H 0.052 0.948 20 C -0.155 4.155 21 N -0.564 5.564 22 Si 0.744 3.256 23 H -0.180 1.180 24 H -0.218 1.218 25 H -0.148 1.148 26 C -0.212 4.212 27 C -0.199 4.199 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.159 0.841 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.127 0.873 46 H 0.103 0.897 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.499 -10.704 10.140 25.251 hybrid contribution 1.031 -1.043 -0.511 1.553 sum -19.468 -11.747 9.628 24.692 Atomic orbital electron populations 1.21825 0.90430 1.04279 1.03833 1.23331 0.97023 0.79071 1.02724 1.86517 1.23037 1.33885 1.83585 1.24007 0.81312 0.92615 0.72571 1.90699 1.60709 1.42960 1.44746 1.20673 0.79437 0.90743 1.05659 0.84316 1.22524 1.04061 1.00898 0.95020 1.57419 1.13007 1.71069 1.37930 1.21414 0.97950 1.01404 0.83590 1.23413 0.98592 0.97016 0.99840 1.23813 1.03952 0.98298 0.97164 1.04438 0.72621 0.76096 0.74182 1.93536 1.43073 1.83366 1.75764 1.93444 1.68526 1.53276 1.82195 1.30222 1.09309 1.17220 1.14019 1.18732 0.98375 1.00146 0.86105 1.20479 0.92023 0.92233 1.52606 0.94765 1.25797 0.95369 1.02636 0.91700 1.70014 1.01156 1.37451 1.47742 0.86168 0.79401 0.80664 0.79324 1.18043 1.21793 1.14835 1.23043 1.01522 0.95522 1.01155 1.23072 0.96236 0.99632 1.00919 0.91429 0.88388 0.90915 0.91579 0.90818 0.90574 0.87560 0.89448 0.86175 0.88138 0.86988 0.87061 0.87148 0.84085 0.85379 0.92069 0.90005 0.87281 0.89710 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 71.98 0.74 -0.58 16 2 C 0.05 0.77 6.19 71.98 0.45 1.21 16 3 O -0.35 -6.82 10.15 -51.43 -0.52 -7.34 16 4 C 0.45 10.74 5.46 71.23 0.39 11.13 16 5 O -0.50 -13.87 13.46 21.96 0.30 -13.57 16 6 C 0.14 3.61 2.99 44.24 0.13 3.75 16 7 H 0.14 3.46 6.91 -2.38 -0.02 3.44 16 8 C -0.17 -3.19 7.76 71.98 0.56 -2.63 16 9 N -0.96 -30.67 2.75 -475.06 -1.31 -31.98 16 10 C 0.06 1.84 5.16 44.99 0.23 2.07 16 11 C -0.15 -3.30 7.55 30.62 0.23 -3.07 16 12 C -0.19 -4.53 9.64 30.62 0.30 -4.23 16 13 S 2.63 112.56 4.60 -56.49 -0.26 112.30 16 14 O -0.97 -50.63 16.36 -127.65 -2.09 -52.72 16 15 O -0.98 -44.75 16.59 -127.65 -2.12 -46.87 16 16 C -0.58 -22.94 6.08 71.98 0.44 -22.51 16 17 C -0.03 -1.44 1.10 -52.90 -0.06 -1.50 16 18 C -0.54 -31.37 7.48 25.60 0.19 -31.18 16 19 H 0.03 2.29 8.06 -2.91 -0.02 2.27 16 20 C 0.05 2.79 5.47 84.65 0.46 3.25 16 21 N -0.93 -59.78 13.96 21.45 0.30 -59.49 16 22 Si 0.92 44.17 25.17 68.60 1.73 45.90 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.23 -9.56 5.28 99.48 0.52 -9.04 16 26 C -0.17 -6.85 7.67 30.60 0.23 -6.61 16 27 C -0.16 -6.31 9.89 30.62 0.30 -6.00 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.04 8.13 -2.38 -0.02 1.02 16 32 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.08 1.58 7.86 -2.39 -0.02 1.56 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.48 4.12 -2.38 -0.01 1.47 16 36 H 0.12 3.77 8.10 -2.38 -0.02 3.75 16 37 H 0.10 2.05 3.83 -2.39 -0.01 2.04 16 38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.11 2.39 5.95 -2.39 -0.01 2.38 16 41 H 0.14 4.44 7.95 -2.39 -0.02 4.42 16 42 H 0.13 4.98 6.19 -2.39 -0.01 4.97 16 43 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 44 H 0.08 3.39 7.34 -2.39 -0.02 3.37 16 45 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 47 H 0.11 3.54 8.09 -2.39 -0.02 3.52 16 Total: -1.00 -79.90 379.36 1.41 -78.48 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.79 Total: 32.18 kcal Atomic # 6 Polarization: -61.48 SS G_CDS: 4.60 Total: -56.88 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -1.01 Total: -91.47 kcal Atomic # 8 Polarization: -116.07 SS G_CDS: -4.43 Total: -120.51 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.73 Total: 45.90 kcal Atomic # 16 Polarization: 112.56 SS G_CDS: -0.26 Total: 112.30 kcal Total: -79.90 1.41 -78.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451457637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.704 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds