Wall clock time and date at job start Wed Apr 1 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.47351 * 2 1 4 4 C 1.34226 * 117.00404 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99834 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00002 * 180.02562 * 4 3 2 7 7 H 1.08998 * 110.43243 * 57.46197 * 6 4 3 8 8 C 1.54891 * 110.59736 * 294.84190 * 6 4 3 9 9 C 1.54889 * 102.74742 * 203.32381 * 8 6 4 10 10 C 1.54368 * 104.21533 * 37.92666 * 9 8 6 11 11 C 1.53868 * 106.55023 * 336.42747 * 10 9 8 12 12 H 1.08998 * 110.03667 * 240.65587 * 11 10 9 13 13 N 1.46497 * 110.03744 * 119.26720 * 11 10 9 14 14 S 1.65601 * 120.00126 * 97.09729 * 13 11 10 15 15 O 1.42102 * 104.27147 * 308.92785 * 14 13 11 16 16 O 1.42094 * 104.27613 * 181.07288 * 14 13 11 17 17 C 1.81397 * 104.45037 * 64.99937 * 14 13 11 18 18 C 1.53000 * 109.47141 * 185.98134 * 17 14 13 19 19 C 1.50709 * 115.54749 * 294.73883 * 18 17 14 20 20 H 1.07997 * 119.99768 * 99.44462 * 19 18 17 21 21 C 1.37876 * 119.99724 * 279.44500 * 19 18 17 22 22 N 1.31510 * 120.00170 * 5.46429 * 21 19 18 23 23 Si 1.86796 * 119.99627 * 185.46294 * 21 19 18 24 24 H 1.48502 * 109.47213 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.47309 * 299.99991 * 23 21 19 26 26 H 1.48501 * 109.47236 * 60.00208 * 23 21 19 27 27 C 1.52997 * 117.52193 * 80.43653 * 18 17 14 28 28 C 1.52991 * 117.50344 * 149.06943 * 18 17 14 29 29 H 1.09011 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47374 * 299.99759 * 1 2 3 31 31 H 1.08997 * 109.46992 * 60.00142 * 1 2 3 32 32 H 1.09008 * 109.47547 * 239.99862 * 2 1 3 33 33 H 1.09002 * 109.47195 * 120.00294 * 2 1 3 34 34 H 1.08999 * 110.75918 * 321.63925 * 8 6 4 35 35 H 1.09005 * 110.75262 * 85.01087 * 8 6 4 36 36 H 1.08995 * 110.48800 * 156.62151 * 9 8 6 37 37 H 1.08999 * 110.48793 * 279.13776 * 9 8 6 38 38 H 1.08998 * 110.07103 * 217.14872 * 10 9 8 39 39 H 1.09000 * 110.04601 * 95.68638 * 10 9 8 40 40 H 0.97005 * 119.99708 * 277.09545 * 13 11 10 41 41 H 1.08997 * 109.47210 * 65.97902 * 17 14 13 42 42 H 1.09001 * 109.47005 * 305.97542 * 17 14 13 43 43 H 0.96997 * 120.00169 * 174.98940 * 22 21 19 44 44 H 1.08997 * 117.49997 * 214.97186 * 27 18 17 45 45 H 1.09004 * 117.49547 * 359.97438 * 27 18 17 46 46 H 1.09002 * 117.50103 * 359.97365 * 28 18 17 47 47 H 1.09001 * 117.50181 * 144.97102 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5581 3.4988 0.8623 8 6 3.5665 3.6742 -1.3145 9 6 4.6757 4.7509 -1.4125 10 6 5.9435 4.0371 -0.8965 11 6 5.4625 2.8840 0.0015 12 1 5.8403 3.0175 1.0152 13 7 5.9203 1.6019 -0.5395 14 16 7.2930 0.8939 0.0579 15 8 8.2711 1.9232 0.0014 16 8 7.4355 -0.2950 -0.7073 17 6 6.8850 0.4973 1.7803 18 6 8.1322 -0.0320 2.4910 19 6 8.6645 -1.3453 1.9779 20 1 9.5024 -1.3591 1.2966 21 6 8.0818 -2.5290 2.3783 22 7 6.9966 -2.5095 3.1209 23 14 8.8338 -4.1603 1.8659 24 1 8.0248 -5.2747 2.4218 25 1 8.8526 -4.2530 0.3839 26 1 10.2221 -4.2502 2.3851 27 6 9.1494 0.9949 2.9927 28 6 8.2628 0.2460 3.9898 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6137 2.9925 -2.1637 35 1 2.5827 4.1383 -1.2445 36 1 4.8101 5.0670 -2.4469 37 1 4.4340 5.6061 -0.7814 38 1 6.5542 4.7307 -0.3186 39 1 6.5176 3.6428 -1.7349 40 1 5.4194 1.1677 -1.2477 41 1 6.1038 -0.2625 1.8030 42 1 6.5324 1.3961 2.2863 43 1 6.5453 -3.3391 3.3420 44 1 10.2035 0.7206 2.9518 45 1 8.9303 2.0479 2.8161 46 1 7.4604 0.8064 4.4695 47 1 8.7334 -0.5211 4.6048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451942070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:58 Heat of formation + Delta-G solvation = -126.057508 kcal Electronic energy + Delta-G solvation = -30501.815455 eV Core-core repulsion = 26392.131996 eV Total energy + Delta-G solvation = -4109.683460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85528 -38.42764 -36.67367 -36.43636 -35.96877 -34.88933 -33.02700 -31.97324 -31.86741 -29.61205 -28.00634 -27.35245 -25.37321 -23.88595 -22.09592 -21.16154 -20.88463 -20.11416 -19.71545 -18.74987 -17.66698 -17.03894 -16.59282 -16.41137 -16.25807 -15.32697 -15.29451 -14.85013 -14.62770 -14.48950 -14.15100 -14.03481 -13.71040 -13.36232 -13.10217 -13.03571 -12.67517 -12.20148 -12.05210 -11.97107 -11.77528 -11.74598 -11.65695 -11.30713 -11.21558 -11.10857 -10.99969 -10.93225 -10.83720 -10.76664 -10.73536 -10.54993 -10.50892 -10.39346 -10.25757 -10.01280 -9.57600 -8.92464 -8.79153 -8.50361 -7.98887 -6.05467 -4.15897 1.32352 2.21708 2.58082 3.37871 3.39264 3.47085 3.61802 4.12392 4.30289 4.44623 4.56842 4.77171 4.81822 4.84624 4.92863 5.09077 5.12052 5.16490 5.17970 5.20795 5.25258 5.27751 5.35422 5.44943 5.56953 5.59055 5.63205 5.70020 5.78327 5.83067 5.84495 5.98182 6.12368 6.20111 6.30941 6.37838 6.46435 6.53271 6.72240 6.77828 7.05416 7.36877 7.43310 7.54330 7.81487 7.88265 8.28637 8.88373 9.54917 11.02447 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011008 B = 0.004601 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.033455 B = 6084.469410 C = 7550.025733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.463 3.537 5 O -0.478 6.478 6 C -0.096 4.096 7 H 0.121 0.879 8 C -0.110 4.110 9 C -0.123 4.123 10 C -0.138 4.138 11 C 0.166 3.834 12 H 0.091 0.909 13 N -1.107 6.107 14 S 2.612 3.388 15 O -0.980 6.980 16 O -0.953 6.953 17 C -0.548 4.548 18 C 0.046 3.954 19 C -0.514 4.514 20 H 0.067 0.933 21 C 0.082 3.918 22 N -0.875 5.875 23 Si 0.890 3.110 24 H -0.286 1.286 25 H -0.269 1.269 26 H -0.274 1.274 27 C -0.208 4.208 28 C -0.146 4.146 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.414 0.586 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.262 0.738 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 13.407 -6.032 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.280 6.280 4 C 0.304 3.696 5 O -0.363 6.363 6 C -0.116 4.116 7 H 0.139 0.861 8 C -0.148 4.148 9 C -0.160 4.160 10 C -0.178 4.178 11 C 0.057 3.943 12 H 0.109 0.891 13 N -0.865 5.865 14 S 2.709 3.291 15 O -0.970 6.970 16 O -0.943 6.943 17 C -0.681 4.681 18 C 0.043 3.957 19 C -0.552 4.552 20 H 0.085 0.915 21 C -0.123 4.123 22 N -0.511 5.511 23 Si 0.717 3.283 24 H -0.212 1.212 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.245 4.245 28 C -0.185 4.185 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.251 0.749 41 H 0.157 0.843 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.890 12.879 -6.280 19.273 hybrid contribution -0.570 -1.346 0.217 1.478 sum -13.460 11.534 -6.063 18.734 Atomic orbital electron populations 1.21791 0.92831 1.02920 1.03202 1.23047 0.95105 0.80226 1.03150 1.86472 1.24805 1.32460 1.84213 1.23471 0.80570 0.92407 0.73173 1.90735 1.59367 1.42926 1.43228 1.22240 0.96210 0.90762 1.02424 0.86103 1.22478 0.99688 0.97581 0.95034 1.22384 0.94330 0.97526 1.01794 1.22746 0.97721 0.96844 1.00472 1.21147 0.90546 0.84661 0.97968 0.89124 1.56081 1.47994 1.30538 1.51934 1.04879 0.72693 0.73454 0.78044 1.93486 1.57810 1.58354 1.87398 1.93529 1.84405 1.47942 1.68466 1.29904 1.09503 1.08078 1.20593 1.18290 0.89459 0.94013 0.93888 1.20479 1.17199 0.88489 1.28993 0.91515 1.24937 0.94621 0.99188 0.93506 1.69963 1.17505 1.27611 1.35977 0.86664 0.79364 0.82631 0.79654 1.21156 1.19430 1.19912 1.23148 0.97400 0.96059 1.07896 1.22561 1.00622 1.01449 0.93895 0.90300 0.91589 0.91707 0.91105 0.90803 0.90843 0.90067 0.90977 0.90975 0.90233 0.89967 0.74850 0.84305 0.89278 0.92801 0.89622 0.90730 0.91679 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.78 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.25 10.22 -39.25 -0.40 -4.65 16 4 C 0.46 6.05 6.98 36.01 0.25 6.30 16 5 O -0.48 -8.00 12.62 -18.75 -0.24 -8.24 16 6 C -0.10 -0.98 3.32 -90.11 -0.30 -1.27 16 7 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.11 -0.89 6.32 -24.74 -0.16 -1.05 16 9 C -0.12 -0.94 6.83 -25.02 -0.17 -1.12 16 10 C -0.14 -1.51 6.60 -25.56 -0.17 -1.68 16 11 C 0.17 2.12 3.16 -66.81 -0.21 1.91 16 12 H 0.09 1.11 7.11 -51.93 -0.37 0.75 16 13 N -1.11 -18.36 3.16 -3.94 -0.01 -18.38 16 14 S 2.61 57.23 5.12 -107.50 -0.55 56.68 16 15 O -0.98 -22.25 17.82 -57.54 -1.03 -23.27 16 16 O -0.95 -24.89 17.74 -57.54 -1.02 -25.91 16 17 C -0.55 -12.45 5.87 37.16 0.22 -12.23 16 18 C 0.05 1.17 1.26 -155.66 -0.20 0.97 16 19 C -0.51 -14.73 8.16 -34.44 -0.28 -15.01 16 20 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 21 C 0.08 2.35 5.42 -17.82 -0.10 2.25 16 22 N -0.88 -25.15 13.10 55.43 0.73 -24.42 16 23 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.21 -4.71 9.96 -26.73 -0.27 -4.98 16 28 C -0.15 -3.44 9.67 -26.74 -0.26 -3.70 16 29 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.02 7.92 -51.93 -0.41 0.60 16 40 H 0.41 6.67 6.94 -34.47 -0.24 6.43 16 41 H 0.14 3.45 8.14 -51.93 -0.42 3.03 16 42 H 0.09 1.70 7.28 -51.92 -0.38 1.32 16 43 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 44 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 45 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -35.36 396.20 -10.30 -45.66 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.70 Total: 8.87 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -1.02 Total: -29.53 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.71 Total: -42.80 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -2.68 Total: -62.08 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 57.23 SS G_CDS: -0.55 Total: 56.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.36 -10.30 -45.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451942070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.402 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds