Wall clock time and date at job start Wed Apr 1 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.47351 * 2 1 4 4 C 1.34226 * 117.00404 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99834 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00002 * 180.02562 * 4 3 2 7 7 H 1.08998 * 110.43243 * 57.46197 * 6 4 3 8 8 C 1.54891 * 110.59736 * 294.84190 * 6 4 3 9 9 C 1.54889 * 102.74742 * 203.32381 * 8 6 4 10 10 C 1.54368 * 104.21533 * 37.92666 * 9 8 6 11 11 C 1.53868 * 106.55023 * 336.42747 * 10 9 8 12 12 H 1.08998 * 110.03667 * 240.65587 * 11 10 9 13 13 N 1.46497 * 110.03744 * 119.26720 * 11 10 9 14 14 S 1.65601 * 120.00126 * 97.09729 * 13 11 10 15 15 O 1.42102 * 104.27147 * 308.92785 * 14 13 11 16 16 O 1.42094 * 104.27613 * 181.07288 * 14 13 11 17 17 C 1.81397 * 104.45037 * 64.99937 * 14 13 11 18 18 C 1.53000 * 109.47141 * 185.98134 * 17 14 13 19 19 C 1.50709 * 115.54749 * 294.73883 * 18 17 14 20 20 H 1.07997 * 119.99768 * 99.44462 * 19 18 17 21 21 C 1.37876 * 119.99724 * 279.44500 * 19 18 17 22 22 N 1.31510 * 120.00170 * 5.46429 * 21 19 18 23 23 Si 1.86796 * 119.99627 * 185.46294 * 21 19 18 24 24 H 1.48502 * 109.47213 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.47309 * 299.99991 * 23 21 19 26 26 H 1.48501 * 109.47236 * 60.00208 * 23 21 19 27 27 C 1.52997 * 117.52193 * 80.43653 * 18 17 14 28 28 C 1.52991 * 117.50344 * 149.06943 * 18 17 14 29 29 H 1.09011 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47374 * 299.99759 * 1 2 3 31 31 H 1.08997 * 109.46992 * 60.00142 * 1 2 3 32 32 H 1.09008 * 109.47547 * 239.99862 * 2 1 3 33 33 H 1.09002 * 109.47195 * 120.00294 * 2 1 3 34 34 H 1.08999 * 110.75918 * 321.63925 * 8 6 4 35 35 H 1.09005 * 110.75262 * 85.01087 * 8 6 4 36 36 H 1.08995 * 110.48800 * 156.62151 * 9 8 6 37 37 H 1.08999 * 110.48793 * 279.13776 * 9 8 6 38 38 H 1.08998 * 110.07103 * 217.14872 * 10 9 8 39 39 H 1.09000 * 110.04601 * 95.68638 * 10 9 8 40 40 H 0.97005 * 119.99708 * 277.09545 * 13 11 10 41 41 H 1.08997 * 109.47210 * 65.97902 * 17 14 13 42 42 H 1.09001 * 109.47005 * 305.97542 * 17 14 13 43 43 H 0.96997 * 120.00169 * 174.98940 * 22 21 19 44 44 H 1.08997 * 117.49997 * 214.97186 * 27 18 17 45 45 H 1.09004 * 117.49547 * 359.97438 * 27 18 17 46 46 H 1.09002 * 117.50103 * 359.97365 * 28 18 17 47 47 H 1.09001 * 117.50181 * 144.97102 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5581 3.4988 0.8623 8 6 3.5665 3.6742 -1.3145 9 6 4.6757 4.7509 -1.4125 10 6 5.9435 4.0371 -0.8965 11 6 5.4625 2.8840 0.0015 12 1 5.8403 3.0175 1.0152 13 7 5.9203 1.6019 -0.5395 14 16 7.2930 0.8939 0.0579 15 8 8.2711 1.9232 0.0014 16 8 7.4355 -0.2950 -0.7073 17 6 6.8850 0.4973 1.7803 18 6 8.1322 -0.0320 2.4910 19 6 8.6645 -1.3453 1.9779 20 1 9.5024 -1.3591 1.2966 21 6 8.0818 -2.5290 2.3783 22 7 6.9966 -2.5095 3.1209 23 14 8.8338 -4.1603 1.8659 24 1 8.0248 -5.2747 2.4218 25 1 8.8526 -4.2530 0.3839 26 1 10.2221 -4.2502 2.3851 27 6 9.1494 0.9949 2.9927 28 6 8.2628 0.2460 3.9898 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6137 2.9925 -2.1637 35 1 2.5827 4.1383 -1.2445 36 1 4.8101 5.0670 -2.4469 37 1 4.4340 5.6061 -0.7814 38 1 6.5542 4.7307 -0.3186 39 1 6.5176 3.6428 -1.7349 40 1 5.4194 1.1677 -1.2477 41 1 6.1038 -0.2625 1.8030 42 1 6.5324 1.3961 2.2863 43 1 6.5453 -3.3391 3.3420 44 1 10.2035 0.7206 2.9518 45 1 8.9303 2.0479 2.8161 46 1 7.4604 0.8064 4.4695 47 1 8.7334 -0.5211 4.6048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451942070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:57 Heat of formation + Delta-G solvation = -149.607826 kcal Electronic energy + Delta-G solvation = -30502.836674 eV Core-core repulsion = 26392.131996 eV Total energy + Delta-G solvation = -4110.704678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85502 -39.33975 -38.58012 -37.86854 -37.39504 -36.73803 -34.17089 -34.11254 -32.65906 -30.40501 -29.82243 -28.27250 -27.51840 -24.71632 -23.02046 -22.96631 -21.64796 -21.55151 -21.08313 -20.36944 -18.89613 -18.37047 -18.34884 -17.62326 -17.43202 -16.86105 -16.62961 -16.52978 -16.19556 -15.77912 -15.57154 -15.15418 -14.99064 -14.87238 -14.19887 -13.89175 -13.76699 -13.71749 -13.61364 -13.15254 -13.09962 -12.97994 -12.88752 -12.87568 -12.86572 -12.83562 -12.48277 -12.46503 -12.23217 -12.10855 -11.97269 -11.94135 -11.86334 -11.54463 -11.49162 -11.44274 -11.22336 -10.90759 -10.58002 -10.18838 -9.80358 -8.21391 -6.36324 -0.39631 1.21400 1.33912 1.37685 1.44352 1.68100 2.11274 2.37331 2.98994 3.05452 3.29364 3.36678 3.49528 3.55684 3.77638 4.00858 4.02198 4.09090 4.10996 4.19987 4.36519 4.37202 4.43163 4.46582 4.48974 4.49481 4.56737 4.68819 4.77198 4.85304 4.87419 4.93363 4.95406 5.10309 5.14999 5.19439 5.23969 5.28051 5.34107 5.47355 5.51074 5.55400 5.56423 5.69543 6.19818 6.24086 6.69212 6.80910 7.35772 8.85672 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011008 B = 0.004601 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.033455 B = 6084.469410 C = 7550.025733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.460 3.540 5 O -0.524 6.524 6 C -0.089 4.089 7 H 0.156 0.844 8 C -0.105 4.105 9 C -0.111 4.111 10 C -0.142 4.142 11 C 0.147 3.853 12 H 0.096 0.904 13 N -1.094 6.094 14 S 2.627 3.373 15 O -0.991 6.991 16 O -1.006 7.006 17 C -0.542 4.542 18 C 0.007 3.993 19 C -0.534 4.534 20 H 0.047 0.953 21 C 0.039 3.961 22 N -0.894 5.894 23 Si 0.935 3.065 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.262 1.262 27 C -0.191 4.191 28 C -0.141 4.141 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.417 0.583 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.264 0.736 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.597 15.911 -5.859 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.304 3.696 5 O -0.412 6.412 6 C -0.109 4.109 7 H 0.173 0.827 8 C -0.143 4.143 9 C -0.149 4.149 10 C -0.181 4.181 11 C 0.039 3.961 12 H 0.114 0.886 13 N -0.856 5.856 14 S 2.724 3.276 15 O -0.981 6.981 16 O -0.996 6.996 17 C -0.675 4.675 18 C 0.005 3.995 19 C -0.572 4.572 20 H 0.066 0.934 21 C -0.163 4.163 22 N -0.530 5.530 23 Si 0.760 3.240 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.187 1.187 27 C -0.228 4.228 28 C -0.180 4.180 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.106 0.894 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.614 15.401 -6.094 22.088 hybrid contribution -0.075 -2.069 0.146 2.075 sum -14.689 13.332 -5.949 20.710 Atomic orbital electron populations 1.21784 0.90031 1.04079 1.03981 1.23206 0.97301 0.79819 1.01948 1.86484 1.24158 1.32779 1.83703 1.24147 0.80636 0.93124 0.71683 1.90734 1.60334 1.44613 1.45504 1.22386 0.93927 0.89455 1.05164 0.82674 1.22527 1.01252 0.97278 0.93209 1.22370 0.92019 0.97662 1.02825 1.22757 0.99381 0.96395 0.99566 1.21648 0.92697 0.83149 0.98601 0.88568 1.55619 1.46732 1.31712 1.51505 1.04129 0.73527 0.72536 0.77423 1.93458 1.59139 1.58083 1.87412 1.93450 1.85845 1.50627 1.69708 1.29749 1.07519 1.08645 1.21574 1.18431 0.91535 0.94110 0.95403 1.20693 1.16940 0.90665 1.28870 0.93443 1.25565 0.95114 1.01828 0.93816 1.70022 1.18108 1.28214 1.36665 0.85965 0.79532 0.79909 0.78623 1.19668 1.20555 1.18682 1.23207 0.96801 0.96861 1.05946 1.22521 1.01332 1.01313 0.92846 0.88998 0.91025 0.90612 0.91872 0.92617 0.91919 0.87389 0.89995 0.88395 0.89418 0.91994 0.74513 0.86891 0.85751 0.92690 0.89828 0.88000 0.89443 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 1.10 6.19 71.98 0.45 1.55 16 3 O -0.35 -7.86 10.22 -51.38 -0.53 -8.38 16 4 C 0.46 11.58 6.98 71.24 0.50 12.08 16 5 O -0.52 -17.91 12.62 21.98 0.28 -17.63 16 6 C -0.09 -1.57 3.32 -10.46 -0.03 -1.60 16 7 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 8 C -0.11 -1.34 6.32 31.89 0.20 -1.13 16 9 C -0.11 -1.29 6.83 31.70 0.22 -1.07 16 10 C -0.14 -2.77 6.60 31.35 0.21 -2.56 16 11 C 0.15 3.48 3.16 45.72 0.14 3.62 16 12 H 0.10 2.14 7.11 -2.39 -0.02 2.12 16 13 N -1.09 -36.36 3.16 -166.38 -0.53 -36.88 16 14 S 2.63 117.14 5.12 -56.49 -0.29 116.85 16 15 O -0.99 -44.91 17.82 -127.65 -2.27 -47.18 16 16 O -1.01 -54.92 17.74 -127.65 -2.26 -57.18 16 17 C -0.54 -24.78 5.87 71.98 0.42 -24.35 16 18 C 0.01 0.38 1.26 -52.93 -0.07 0.31 16 19 C -0.53 -31.44 8.16 25.60 0.21 -31.23 16 20 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 21 C 0.04 2.29 5.42 84.65 0.46 2.75 16 22 N -0.89 -52.34 13.10 21.45 0.28 -52.06 16 23 Si 0.93 46.42 29.54 68.60 2.03 48.44 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.28 -14.27 7.11 99.48 0.71 -13.57 16 26 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 27 C -0.19 -8.47 9.96 30.59 0.30 -8.16 16 28 C -0.14 -6.55 9.67 30.59 0.30 -6.26 16 29 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 34 H 0.06 0.95 8.05 -2.39 -0.02 0.93 16 35 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.47 7.92 -2.39 -0.02 1.45 16 40 H 0.42 13.77 6.94 -96.74 -0.67 13.10 16 41 H 0.11 5.80 8.14 -2.39 -0.02 5.78 16 42 H 0.12 4.58 7.28 -2.39 -0.02 4.56 16 43 H 0.26 14.71 8.32 -92.71 -0.77 13.94 16 44 H 0.08 3.69 8.14 -2.39 -0.02 3.68 16 45 H 0.10 3.92 8.14 -2.38 -0.02 3.90 16 46 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 47 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -79.30 396.20 1.04 -78.26 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.29 Total: 33.05 kcal Atomic # 6 Polarization: -61.33 SS G_CDS: 4.04 Total: -57.29 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -0.24 Total: -88.94 kcal Atomic # 8 Polarization: -125.59 SS G_CDS: -4.79 Total: -130.37 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 117.14 SS G_CDS: -0.29 Total: 116.85 kcal Total: -79.30 1.04 -78.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451942070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.345 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds