Wall clock time and date at job start Wed Apr 1 2020 03:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 119.99759 * 2 1 4 4 C 1.52997 * 109.46867 * 125.00116 * 3 2 1 5 5 C 1.52999 * 109.47013 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47555 * 304.99892 * 5 4 3 7 7 N 1.46502 * 109.47209 * 65.00263 * 5 4 3 8 8 S 1.65597 * 120.00028 * 215.00278 * 7 5 4 9 9 O 1.42102 * 104.27971 * 181.06610 * 8 7 5 10 10 O 1.42108 * 104.27595 * 308.92460 * 8 7 5 11 11 C 1.81406 * 104.45289 * 64.99530 * 8 7 5 12 12 C 1.52991 * 109.47205 * 173.74525 * 11 8 7 13 13 C 1.50705 * 115.55230 * 65.19503 * 12 11 8 14 14 H 1.07998 * 119.99608 * 264.78432 * 13 12 11 15 15 C 1.37878 * 120.00005 * 84.78114 * 13 12 11 16 16 N 1.31505 * 120.00109 * 352.23675 * 15 13 12 17 17 Si 1.86801 * 119.99754 * 172.23605 * 15 13 12 18 18 H 1.48503 * 109.46905 * 89.99991 * 17 15 13 19 19 H 1.48501 * 109.46932 * 209.99693 * 17 15 13 20 20 H 1.48498 * 109.47369 * 330.00257 * 17 15 13 21 21 C 1.52999 * 117.50052 * 279.52278 * 12 11 8 22 22 C 1.53002 * 117.49831 * 210.86205 * 12 11 8 23 23 C 1.50702 * 109.47156 * 184.99887 * 5 4 3 24 24 O 1.20833 * 120.00080 * 239.99845 * 23 5 4 25 25 O 1.34233 * 119.99939 * 60.00173 * 23 5 4 26 26 C 1.45203 * 116.99797 * 179.97438 * 25 23 5 27 27 C 1.52994 * 109.46711 * 179.97438 * 26 25 23 28 28 H 1.07999 * 119.99832 * 179.97438 * 1 2 3 29 29 H 1.08008 * 120.00165 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00202 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47250 * 5.00032 * 3 2 1 32 32 H 1.08996 * 109.46797 * 244.99780 * 3 2 1 33 33 H 1.08997 * 109.47601 * 60.00314 * 4 3 2 34 34 H 1.09002 * 109.47492 * 300.00042 * 4 3 2 35 35 H 0.97001 * 119.99942 * 34.99367 * 7 5 4 36 36 H 1.09004 * 109.46599 * 293.74709 * 11 8 7 37 37 H 1.08995 * 109.47023 * 53.74066 * 11 8 7 38 38 H 0.97004 * 120.00306 * 185.03305 * 16 15 13 39 39 H 1.08994 * 117.49593 * 359.97438 * 21 12 11 40 40 H 1.08998 * 117.49867 * 145.02469 * 21 12 11 41 41 H 1.09001 * 117.49919 * 214.98145 * 22 12 11 42 42 H 1.09002 * 117.49945 * 359.97438 * 22 12 11 43 43 H 1.08996 * 109.47501 * 299.99972 * 26 25 23 44 44 H 1.09002 * 109.46980 * 60.00311 * 26 25 23 45 45 H 1.09003 * 109.47292 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47767 * 300.00354 * 27 26 25 47 47 H 1.09004 * 109.47420 * 60.00411 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3331 1.1816 5 6 3.8003 2.6579 1.1813 6 1 4.2865 2.7965 0.2156 7 7 2.8669 3.7613 1.4209 8 16 3.1036 5.2222 0.6780 9 8 2.0413 6.0354 1.1572 10 8 4.4582 5.5443 0.9618 11 6 2.8894 4.8716 -1.0890 12 6 2.9310 6.1819 -1.8776 13 6 4.2480 6.9141 -1.8528 14 1 4.4138 7.7029 -1.1341 15 6 5.2412 6.5768 -2.7477 16 7 5.1008 5.5206 -3.5186 17 14 6.7863 7.6200 -2.8651 18 1 7.8065 7.1017 -1.9186 19 1 7.3198 7.5603 -4.2496 20 1 6.4608 9.0272 -2.5202 21 6 1.6547 7.0249 -1.9147 22 6 2.1035 6.2598 -3.1622 23 6 4.8424 2.6363 2.2697 24 8 4.8088 3.4582 3.1547 25 8 5.8080 1.7039 2.2560 26 6 6.7782 1.7438 3.3356 27 6 7.7920 0.6127 3.1520 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9354 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 3.7399 0.5067 1.0920 34 1 2.4772 1.2356 2.1130 35 1 2.1101 3.6361 2.0146 36 1 3.6919 4.2170 -1.4293 37 1 1.9289 4.3818 -1.2483 38 1 5.8288 5.2409 -4.0954 39 1 0.7854 6.6458 -1.3776 40 1 1.7677 8.1090 -1.9216 41 1 2.5116 6.8409 -3.9893 42 1 1.5299 5.3773 -3.4457 43 1 7.2967 2.7025 3.3230 44 1 6.2655 1.6204 4.2895 45 1 8.5201 0.6423 3.9627 46 1 7.2733 -0.3459 3.1648 47 1 8.3048 0.7356 2.1980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451992641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:22 Heat of formation + Delta-G solvation = -124.497730 kcal Electronic energy + Delta-G solvation = -29870.942254 eV Core-core repulsion = 25761.326432 eV Total energy + Delta-G solvation = -4109.615823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47366 -37.38815 -36.79103 -36.29888 -36.22942 -35.08425 -34.34054 -32.06425 -31.84120 -30.51631 -28.24337 -27.07974 -25.47743 -23.53272 -22.41888 -21.23595 -20.90735 -19.95103 -19.82544 -18.80070 -17.74922 -17.05127 -16.89121 -16.39685 -16.23795 -15.87322 -15.24540 -15.01252 -14.74541 -14.46309 -14.28732 -14.06611 -13.76348 -13.48920 -13.16718 -13.01129 -12.90182 -12.60400 -12.08514 -12.00039 -11.88153 -11.85658 -11.64471 -11.39636 -11.30022 -11.17137 -11.08942 -11.00698 -10.97361 -10.94859 -10.65264 -10.58346 -10.51233 -10.46494 -10.13035 -9.78757 -9.52434 -9.35668 -8.97973 -8.58225 -8.13164 -6.16398 -4.26496 0.96273 2.12357 2.34619 2.63070 3.30008 3.34381 3.35909 3.41274 4.36221 4.37329 4.46499 4.68541 4.73198 4.84653 4.88304 4.92998 4.96503 5.05065 5.11997 5.17126 5.19020 5.21978 5.28605 5.43748 5.57080 5.60965 5.67347 5.73522 5.79801 5.84264 5.91785 5.99043 6.03321 6.22002 6.33306 6.48400 6.49959 6.56786 6.63667 6.70372 6.94805 7.08427 7.21361 7.37178 7.78834 7.87751 8.17998 8.79250 9.44911 10.91195 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.004719 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.766682 B = 5932.372586 C = 7490.671371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.102 4.102 4 C -0.113 4.113 5 C 0.169 3.831 6 H 0.127 0.873 7 N -1.109 6.109 8 S 2.599 3.401 9 O -0.967 6.967 10 O -0.939 6.939 11 C -0.554 4.554 12 C 0.043 3.957 13 C -0.516 4.516 14 H 0.068 0.932 15 C 0.083 3.917 16 N -0.875 5.875 17 Si 0.890 3.110 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.208 4.208 22 C -0.139 4.139 23 C 0.447 3.553 24 O -0.484 6.484 25 O -0.359 6.359 26 C 0.060 3.940 27 C -0.151 4.151 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.415 0.585 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -15.049 7.733 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.168 4.168 3 C -0.139 4.139 4 C -0.152 4.152 5 C 0.058 3.942 6 H 0.144 0.856 7 N -0.864 5.864 8 S 2.696 3.304 9 O -0.958 6.958 10 O -0.929 6.929 11 C -0.687 4.687 12 C 0.041 3.959 13 C -0.553 4.553 14 H 0.086 0.914 15 C -0.122 4.122 16 N -0.510 5.510 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.246 4.246 22 C -0.178 4.178 23 C 0.285 3.715 24 O -0.368 6.368 25 O -0.276 6.276 26 C -0.014 4.014 27 C -0.208 4.208 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.724 -14.038 8.213 16.490 hybrid contribution 0.535 -0.061 -0.235 0.587 sum -2.190 -14.099 7.978 16.347 Atomic orbital electron populations 1.23883 0.96048 1.01874 1.01521 1.22910 0.95974 0.98308 0.99570 1.20859 0.98467 0.95975 0.98565 1.21795 0.98649 0.94658 1.00113 1.20241 0.87945 0.89788 0.96203 0.85570 1.56062 1.36960 1.30499 1.62872 1.05552 0.74693 0.72272 0.77868 1.93515 1.57664 1.64716 1.79861 1.93572 1.35513 1.80590 1.83206 1.30021 1.08827 1.08981 1.20879 1.18262 0.91404 0.89332 0.96944 1.20526 0.96769 1.19593 1.18422 0.91378 1.24929 0.98224 0.94855 0.94167 1.69963 1.32143 1.23661 1.25234 0.86600 0.83089 0.81372 0.77267 1.20060 1.21031 1.19405 1.23206 0.98720 0.98903 1.03733 1.22554 1.02730 1.00393 0.92166 1.24308 0.81566 0.78481 0.87105 1.90674 1.73008 1.36911 1.36237 1.86478 1.38175 1.52696 1.50241 1.23013 0.89196 1.00627 0.88580 1.21798 0.97936 0.97798 1.03308 0.88688 0.88436 0.87317 0.90589 0.89716 0.88968 0.90494 0.75137 0.84854 0.87952 0.92713 0.90647 0.89495 0.89557 0.91457 0.90998 0.91456 0.90427 0.91607 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 14.32 29.02 0.42 -1.24 16 2 C -0.15 -1.28 9.52 -36.02 -0.34 -1.63 16 3 C -0.10 -0.96 5.54 -27.88 -0.15 -1.11 16 4 C -0.11 -1.08 4.76 -26.73 -0.13 -1.21 16 5 C 0.17 2.29 2.58 -69.08 -0.18 2.11 16 6 H 0.13 1.67 7.29 -51.93 -0.38 1.29 16 7 N -1.11 -16.75 4.30 -5.88 -0.03 -16.77 16 8 S 2.60 52.99 5.11 -107.50 -0.55 52.44 16 9 O -0.97 -21.56 18.08 -57.54 -1.04 -22.60 16 10 O -0.94 -23.12 17.45 -57.54 -1.00 -24.12 16 11 C -0.55 -11.07 5.76 37.15 0.21 -10.86 16 12 C 0.04 1.02 1.32 -155.66 -0.21 0.82 16 13 C -0.52 -13.97 8.19 -34.44 -0.28 -14.25 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 16 N -0.87 -23.43 12.98 55.43 0.72 -22.71 16 17 Si 0.89 21.29 29.55 -169.99 -5.02 16.27 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.21 -4.50 9.96 -26.69 -0.27 -4.77 16 22 C -0.14 -3.08 9.49 -26.69 -0.25 -3.33 16 23 C 0.45 7.05 7.28 36.01 0.26 7.32 16 24 O -0.48 -9.24 16.18 -18.76 -0.30 -9.55 16 25 O -0.36 -4.89 10.03 -39.26 -0.39 -5.28 16 26 C 0.06 0.69 6.19 37.15 0.23 0.92 16 27 C -0.15 -1.24 10.29 37.15 0.38 -0.86 16 28 H 0.09 0.69 8.06 -52.49 -0.42 0.26 16 29 H 0.10 0.82 7.84 -52.48 -0.41 0.41 16 30 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.08 0.73 7.40 -51.93 -0.38 0.34 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.76 7.99 -51.93 -0.42 0.35 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.42 5.26 8.80 -34.47 -0.30 4.96 16 36 H 0.13 2.69 7.64 -51.92 -0.40 2.30 16 37 H 0.10 1.66 8.09 -51.93 -0.42 1.24 16 38 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 44 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 412.44 15.07 6.22 6.22 Total: -1.00 -34.82 412.44 -9.56 -44.37 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.75 Total: 7.70 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -0.40 Total: -25.96 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.69 Total: -39.49 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -2.74 Total: -61.56 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 52.99 SS G_CDS: -0.55 Total: 52.44 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.82 -9.56 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451992641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.126 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds