Wall clock time and date at job start Wed Apr 1 2020 03:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 119.99759 * 2 1 4 4 C 1.52997 * 109.46867 * 125.00116 * 3 2 1 5 5 C 1.52999 * 109.47013 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47555 * 304.99892 * 5 4 3 7 7 N 1.46502 * 109.47209 * 65.00263 * 5 4 3 8 8 S 1.65597 * 120.00028 * 215.00278 * 7 5 4 9 9 O 1.42102 * 104.27971 * 181.06610 * 8 7 5 10 10 O 1.42108 * 104.27595 * 308.92460 * 8 7 5 11 11 C 1.81406 * 104.45289 * 64.99530 * 8 7 5 12 12 C 1.52991 * 109.47205 * 173.74525 * 11 8 7 13 13 C 1.50705 * 115.55230 * 65.19503 * 12 11 8 14 14 H 1.07998 * 119.99608 * 264.78432 * 13 12 11 15 15 C 1.37878 * 120.00005 * 84.78114 * 13 12 11 16 16 N 1.31505 * 120.00109 * 352.23675 * 15 13 12 17 17 Si 1.86801 * 119.99754 * 172.23605 * 15 13 12 18 18 H 1.48503 * 109.46905 * 89.99991 * 17 15 13 19 19 H 1.48501 * 109.46932 * 209.99693 * 17 15 13 20 20 H 1.48498 * 109.47369 * 330.00257 * 17 15 13 21 21 C 1.52999 * 117.50052 * 279.52278 * 12 11 8 22 22 C 1.53002 * 117.49831 * 210.86205 * 12 11 8 23 23 C 1.50702 * 109.47156 * 184.99887 * 5 4 3 24 24 O 1.20833 * 120.00080 * 239.99845 * 23 5 4 25 25 O 1.34233 * 119.99939 * 60.00173 * 23 5 4 26 26 C 1.45203 * 116.99797 * 179.97438 * 25 23 5 27 27 C 1.52994 * 109.46711 * 179.97438 * 26 25 23 28 28 H 1.07999 * 119.99832 * 179.97438 * 1 2 3 29 29 H 1.08008 * 120.00165 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00202 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47250 * 5.00032 * 3 2 1 32 32 H 1.08996 * 109.46797 * 244.99780 * 3 2 1 33 33 H 1.08997 * 109.47601 * 60.00314 * 4 3 2 34 34 H 1.09002 * 109.47492 * 300.00042 * 4 3 2 35 35 H 0.97001 * 119.99942 * 34.99367 * 7 5 4 36 36 H 1.09004 * 109.46599 * 293.74709 * 11 8 7 37 37 H 1.08995 * 109.47023 * 53.74066 * 11 8 7 38 38 H 0.97004 * 120.00306 * 185.03305 * 16 15 13 39 39 H 1.08994 * 117.49593 * 359.97438 * 21 12 11 40 40 H 1.08998 * 117.49867 * 145.02469 * 21 12 11 41 41 H 1.09001 * 117.49919 * 214.98145 * 22 12 11 42 42 H 1.09002 * 117.49945 * 359.97438 * 22 12 11 43 43 H 1.08996 * 109.47501 * 299.99972 * 26 25 23 44 44 H 1.09002 * 109.46980 * 60.00311 * 26 25 23 45 45 H 1.09003 * 109.47292 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47767 * 300.00354 * 27 26 25 47 47 H 1.09004 * 109.47420 * 60.00411 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3331 1.1816 5 6 3.8003 2.6579 1.1813 6 1 4.2865 2.7965 0.2156 7 7 2.8669 3.7613 1.4209 8 16 3.1036 5.2222 0.6780 9 8 2.0413 6.0354 1.1572 10 8 4.4582 5.5443 0.9618 11 6 2.8894 4.8716 -1.0890 12 6 2.9310 6.1819 -1.8776 13 6 4.2480 6.9141 -1.8528 14 1 4.4138 7.7029 -1.1341 15 6 5.2412 6.5768 -2.7477 16 7 5.1008 5.5206 -3.5186 17 14 6.7863 7.6200 -2.8651 18 1 7.8065 7.1017 -1.9186 19 1 7.3198 7.5603 -4.2496 20 1 6.4608 9.0272 -2.5202 21 6 1.6547 7.0249 -1.9147 22 6 2.1035 6.2598 -3.1622 23 6 4.8424 2.6363 2.2697 24 8 4.8088 3.4582 3.1547 25 8 5.8080 1.7039 2.2560 26 6 6.7782 1.7438 3.3356 27 6 7.7920 0.6127 3.1520 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9354 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 3.7399 0.5067 1.0920 34 1 2.4772 1.2356 2.1130 35 1 2.1101 3.6361 2.0146 36 1 3.6919 4.2170 -1.4293 37 1 1.9289 4.3818 -1.2483 38 1 5.8288 5.2409 -4.0954 39 1 0.7854 6.6458 -1.3776 40 1 1.7677 8.1090 -1.9216 41 1 2.5116 6.8409 -3.9893 42 1 1.5299 5.3773 -3.4457 43 1 7.2967 2.7025 3.3230 44 1 6.2655 1.6204 4.2895 45 1 8.5201 0.6423 3.9627 46 1 7.2733 -0.3459 3.1648 47 1 8.3048 0.7356 2.1980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451992641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:21 Heat of formation + Delta-G solvation = -147.303289 kcal Electronic energy + Delta-G solvation = -29871.931178 eV Core-core repulsion = 25761.326432 eV Total energy + Delta-G solvation = -4110.604746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.65981 -38.56821 -38.43295 -37.92583 -37.40496 -36.81620 -35.25565 -34.08049 -32.70984 -31.42409 -29.89543 -28.04917 -27.47766 -24.37813 -23.29256 -22.96956 -22.02744 -21.59836 -20.57740 -20.38065 -19.00548 -18.52919 -18.33621 -17.88184 -17.51053 -17.00103 -16.71684 -16.67434 -16.18069 -15.84184 -15.51109 -15.27994 -14.95550 -14.82568 -14.48974 -13.89039 -13.75888 -13.68884 -13.61154 -13.55226 -13.14972 -12.96751 -12.93251 -12.91333 -12.88538 -12.86094 -12.57389 -12.49110 -12.44354 -12.20829 -11.97278 -11.91119 -11.77697 -11.70355 -11.52926 -11.51657 -10.87061 -10.73871 -10.53642 -10.09784 -9.89867 -8.19669 -6.32996 -0.62891 1.09861 1.36826 1.40009 1.48038 1.48296 1.57600 1.96462 2.39333 2.90151 3.07543 3.38410 3.40948 3.42469 3.70983 3.78435 3.91948 4.00220 4.09276 4.14923 4.24139 4.30788 4.34257 4.47965 4.49896 4.55903 4.60534 4.66829 4.84119 4.84271 4.89501 4.94005 5.00424 5.10296 5.14061 5.21965 5.23746 5.33830 5.42854 5.46567 5.61739 5.72184 5.88130 5.96893 6.01856 6.23324 6.68272 6.71905 7.38875 8.87135 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.004719 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.766682 B = 5932.372586 C = 7490.671371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.105 4.105 4 C -0.101 4.101 5 C 0.162 3.838 6 H 0.130 0.870 7 N -1.093 6.093 8 S 2.609 3.391 9 O -0.992 6.992 10 O -0.991 6.991 11 C -0.543 4.543 12 C 0.009 3.991 13 C -0.536 4.536 14 H 0.043 0.957 15 C 0.049 3.951 16 N -0.886 5.886 17 Si 0.928 3.072 18 H -0.280 1.280 19 H -0.270 1.270 20 H -0.273 1.273 21 C -0.200 4.200 22 C -0.131 4.131 23 C 0.443 3.557 24 O -0.526 6.526 25 O -0.354 6.354 26 C 0.049 3.951 27 C -0.143 4.143 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.428 0.572 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.267 0.733 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 -17.467 7.443 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.171 4.171 3 C -0.142 4.142 4 C -0.140 4.140 5 C 0.052 3.948 6 H 0.147 0.853 7 N -0.852 5.852 8 S 2.708 3.292 9 O -0.982 6.982 10 O -0.980 6.980 11 C -0.676 4.676 12 C 0.007 3.993 13 C -0.573 4.573 14 H 0.061 0.939 15 C -0.155 4.155 16 N -0.522 5.522 17 Si 0.754 3.246 18 H -0.206 1.206 19 H -0.195 1.195 20 H -0.197 1.197 21 C -0.238 4.238 22 C -0.170 4.170 23 C 0.284 3.716 24 O -0.414 6.414 25 O -0.270 6.270 26 C -0.025 4.025 27 C -0.200 4.200 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.264 0.736 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.508 -16.466 7.920 18.606 hybrid contribution 0.788 0.667 -0.106 1.038 sum -2.720 -15.799 7.814 17.834 Atomic orbital electron populations 1.24034 0.96212 1.02386 1.01176 1.22959 0.96039 0.98324 0.99825 1.20892 0.98412 0.96608 0.98298 1.21793 0.98765 0.92479 1.00936 1.20610 0.87763 0.90989 0.95427 0.85293 1.55484 1.37684 1.29441 1.62629 1.04912 0.73204 0.72896 0.78212 1.93467 1.57837 1.66485 1.80435 1.93511 1.38194 1.82186 1.84154 1.29832 1.11135 1.07339 1.19336 1.18387 0.90743 0.91147 0.99024 1.20662 0.98900 1.19676 1.18092 0.93902 1.25401 1.00079 0.95767 0.94219 1.69978 1.32748 1.24001 1.25435 0.86017 0.80795 0.80119 0.77717 1.20613 1.19465 1.19749 1.23261 0.98523 0.98505 1.03468 1.22523 1.02241 1.01092 0.91181 1.24804 0.81941 0.77967 0.86892 1.90658 1.74130 1.38510 1.38060 1.86484 1.37919 1.51719 1.50888 1.23320 0.89426 1.01268 0.88482 1.21815 0.97353 0.96860 1.03979 0.87564 0.88702 0.85999 0.90772 0.89760 0.87075 0.89385 0.73552 0.85056 0.83750 0.92400 0.88144 0.90280 0.91554 0.88786 0.92829 0.90752 0.88285 0.90220 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 14.32 67.79 0.97 -1.89 16 2 C -0.15 -2.18 9.52 25.66 0.24 -1.94 16 3 C -0.10 -1.69 5.54 29.85 0.17 -1.52 16 4 C -0.10 -1.68 4.76 30.59 0.15 -1.53 16 5 C 0.16 4.19 2.58 44.25 0.11 4.31 16 6 H 0.13 3.29 7.29 -2.39 -0.02 3.27 16 7 N -1.09 -32.00 4.30 -172.52 -0.74 -32.74 16 8 S 2.61 106.15 5.11 -56.49 -0.29 105.86 16 9 O -0.99 -44.03 18.08 -127.65 -2.31 -46.34 16 10 O -0.99 -50.21 17.45 -127.65 -2.23 -52.44 16 11 C -0.54 -20.93 5.76 71.98 0.41 -20.52 16 12 C 0.01 0.44 1.32 -52.93 -0.07 0.37 16 13 C -0.54 -29.47 8.19 25.60 0.21 -29.26 16 14 H 0.04 2.50 7.83 -2.91 -0.02 2.48 16 15 C 0.05 2.64 5.38 84.66 0.46 3.09 16 16 N -0.89 -47.08 12.98 21.45 0.28 -46.80 16 17 Si 0.93 43.89 29.55 68.60 2.03 45.92 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 21 C -0.20 -8.41 9.96 30.62 0.30 -8.11 16 22 C -0.13 -5.61 9.49 30.62 0.29 -5.32 16 23 C 0.44 13.86 7.28 71.24 0.52 14.37 16 24 O -0.53 -20.44 16.18 21.94 0.36 -20.09 16 25 O -0.35 -9.35 10.03 -51.44 -0.52 -9.87 16 26 C 0.05 1.10 6.19 71.98 0.45 1.54 16 27 C -0.14 -2.08 10.29 71.98 0.74 -1.34 16 28 H 0.11 1.25 8.06 -2.91 -0.02 1.22 16 29 H 0.09 1.38 7.84 -2.91 -0.02 1.36 16 30 H 0.12 1.40 8.06 -2.91 -0.02 1.37 16 31 H 0.07 1.21 7.40 -2.39 -0.02 1.19 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.48 7.99 -2.39 -0.02 1.46 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.43 10.29 8.80 -96.75 -0.85 9.44 16 36 H 0.13 5.16 7.64 -2.39 -0.02 5.14 16 37 H 0.14 4.24 8.09 -2.39 -0.02 4.22 16 38 H 0.27 13.47 8.32 -92.70 -0.77 12.70 16 39 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 40 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.09 3.47 8.14 -2.39 -0.02 3.46 16 43 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 44 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -76.20 412.44 1.63 -74.57 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.10 Total: 29.68 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 4.95 Total: -47.74 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -0.46 Total: -79.54 kcal Atomic # 8 Polarization: -124.04 SS G_CDS: -4.70 Total: -128.74 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 106.15 SS G_CDS: -0.29 Total: 105.86 kcal Total: -76.20 1.63 -74.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451992641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.738 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds