Wall clock time and date at job start Wed Apr 1 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00177 * 2 1 4 4 C 1.52999 * 109.47543 * 124.99694 * 3 2 1 5 5 C 1.53001 * 109.47748 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46923 * 54.99699 * 5 4 3 7 7 N 1.46502 * 109.46850 * 295.00218 * 5 4 3 8 8 S 1.65600 * 119.99886 * 144.99830 * 7 5 4 9 9 O 1.42099 * 104.27747 * 308.92295 * 8 7 5 10 10 O 1.42098 * 104.27442 * 181.07204 * 8 7 5 11 11 C 1.81400 * 104.44991 * 64.99791 * 8 7 5 12 12 C 1.52997 * 109.46819 * 183.76783 * 11 8 7 13 13 C 1.50695 * 115.55556 * 294.68537 * 12 11 8 14 14 H 1.08005 * 120.00096 * 114.88354 * 13 12 11 15 15 C 1.37874 * 120.00193 * 294.61322 * 13 12 11 16 16 N 1.31521 * 120.00192 * 174.84076 * 15 13 12 17 17 Si 1.86799 * 119.99911 * 354.84878 * 15 13 12 18 18 H 1.48501 * 109.47569 * 93.45487 * 17 15 13 19 19 H 1.48500 * 109.47004 * 213.45371 * 17 15 13 20 20 H 1.48501 * 109.46839 * 333.45498 * 17 15 13 21 21 C 1.53001 * 117.49538 * 80.36250 * 12 11 8 22 22 C 1.53010 * 117.49325 * 149.01474 * 12 11 8 23 23 C 1.50696 * 109.47403 * 175.00182 * 5 4 3 24 24 O 1.20819 * 120.00240 * 120.00135 * 23 5 4 25 25 O 1.34232 * 119.99852 * 299.99574 * 23 5 4 26 26 C 1.45194 * 117.00072 * 179.97438 * 25 23 5 27 27 C 1.53001 * 109.47143 * 179.97438 * 26 25 23 28 28 H 1.08002 * 120.00091 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99960 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99850 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46933 * 4.99616 * 3 2 1 32 32 H 1.08995 * 109.47360 * 244.99845 * 3 2 1 33 33 H 1.08998 * 109.46897 * 59.99494 * 4 3 2 34 34 H 1.09008 * 109.47041 * 300.00522 * 4 3 2 35 35 H 0.97000 * 119.99619 * 324.99877 * 7 5 4 36 36 H 1.08997 * 109.46941 * 63.77317 * 11 8 7 37 37 H 1.08997 * 109.46881 * 303.77481 * 11 8 7 38 38 H 0.96994 * 120.00056 * 179.97438 * 16 15 13 39 39 H 1.09007 * 117.49761 * 214.99852 * 21 12 11 40 40 H 1.09004 * 117.50428 * 0.02562 * 21 12 11 41 41 H 1.08996 * 117.49955 * 359.97438 * 22 12 11 42 42 H 1.09004 * 117.48981 * 144.97480 * 22 12 11 43 43 H 1.08993 * 109.47395 * 300.00720 * 26 25 23 44 44 H 1.09004 * 109.46732 * 60.00809 * 26 25 23 45 45 H 1.08993 * 109.47618 * 300.00651 * 27 26 25 46 46 H 1.09001 * 109.47018 * 60.01050 * 27 26 25 47 47 H 1.09007 * 109.47103 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6584 1.1820 6 1 3.0910 3.4866 1.1822 7 7 4.6419 2.7365 -0.0141 8 16 4.8847 4.1940 -0.7620 9 8 3.5759 4.7156 -0.9463 10 8 5.7129 3.8834 -1.8741 11 6 5.7978 5.1809 0.4557 12 6 6.0039 6.5966 -0.0867 13 6 6.8819 6.7039 -1.3067 14 1 6.4648 7.0410 -2.2442 15 6 8.2188 6.3772 -1.2248 16 7 8.9624 6.3730 -2.3097 17 14 8.9741 5.9405 0.4269 18 1 8.9334 4.4681 0.6161 19 1 10.3839 6.4056 0.4650 20 1 8.2055 6.6005 1.5126 21 6 4.8333 7.5750 0.0296 22 6 6.0615 7.7404 0.9281 23 6 4.6660 2.7382 2.4125 24 8 5.8639 2.8490 2.3017 25 8 4.1066 2.6862 3.6316 26 6 5.0020 2.7681 4.7717 27 6 4.1886 2.6934 6.0654 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6213 1.4025 -0.9313 33 1 3.7399 0.5065 1.0922 34 1 2.4771 1.2356 2.1131 35 1 5.0572 1.9346 -0.3680 36 1 6.7671 4.7194 0.6442 37 1 5.2303 5.2268 1.3852 38 1 9.9030 6.1435 -2.2520 39 1 4.6982 8.2963 -0.7764 40 1 3.9165 7.2102 0.4929 41 1 5.9522 7.4843 1.9819 42 1 6.7349 8.5702 0.7132 43 1 5.7094 1.9396 4.7384 44 1 5.5462 3.7120 4.7392 45 1 3.4815 3.5222 6.0984 46 1 3.6441 1.7497 6.0983 47 1 4.8607 2.7553 6.9213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451992643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:24 Heat of formation + Delta-G solvation = -143.701577 kcal Electronic energy + Delta-G solvation = -30121.935088 eV Core-core repulsion = 26011.486524 eV Total energy + Delta-G solvation = -4110.448564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74979 -38.86152 -38.50119 -38.01933 -37.44777 -36.92400 -35.33314 -34.35461 -32.70955 -31.46284 -30.22851 -28.10191 -27.61723 -24.38469 -23.33050 -23.29662 -22.03156 -21.46341 -20.69467 -20.46456 -19.07133 -18.62853 -18.51996 -18.13800 -17.55691 -17.10470 -17.02846 -16.59799 -16.17780 -15.89208 -15.55180 -15.35781 -15.02078 -14.88105 -14.57745 -14.44868 -14.15133 -14.00784 -13.63678 -13.32987 -13.21797 -13.09127 -13.06586 -12.99119 -12.89219 -12.72831 -12.56840 -12.50432 -12.48999 -12.19152 -12.13244 -11.87533 -11.81329 -11.73304 -11.60829 -11.51893 -11.03932 -10.84488 -10.74673 -10.25931 -10.10122 -8.36587 -6.46000 -0.72543 0.99001 1.25439 1.29260 1.34196 1.42597 1.50871 1.90810 2.28409 2.77572 2.89779 3.12321 3.25657 3.38238 3.60966 3.73553 3.80448 3.92148 4.02515 4.09425 4.12343 4.25305 4.26771 4.36182 4.37948 4.40473 4.50859 4.57876 4.62061 4.83980 4.85512 4.86130 4.94521 4.95831 5.05888 5.14359 5.18108 5.18593 5.30690 5.41149 5.45259 5.57146 5.83783 5.85888 5.97836 6.18687 6.60515 6.63066 7.24890 8.79481 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.004684 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.933541 B = 5976.118942 C = 7411.200531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.102 4.102 4 C -0.101 4.101 5 C 0.153 3.847 6 H 0.146 0.854 7 N -1.095 6.095 8 S 2.622 3.378 9 O -0.970 6.970 10 O -0.982 6.982 11 C -0.569 4.569 12 C -0.038 4.038 13 C -0.508 4.508 14 H 0.038 0.962 15 C 0.037 3.963 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.212 1.212 21 C -0.169 4.169 22 C -0.161 4.161 23 C 0.440 3.560 24 O -0.522 6.522 25 O -0.347 6.347 26 C 0.048 3.952 27 C -0.145 4.145 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.428 0.572 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.836 -13.043 18.387 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.178 4.178 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.043 3.957 6 H 0.163 0.837 7 N -0.854 5.854 8 S 2.717 3.283 9 O -0.959 6.959 10 O -0.972 6.972 11 C -0.700 4.700 12 C -0.041 4.041 13 C -0.545 4.545 14 H 0.056 0.944 15 C -0.163 4.163 16 N -0.571 5.571 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.134 1.134 21 C -0.206 4.206 22 C -0.200 4.200 23 C 0.281 3.719 24 O -0.410 6.410 25 O -0.263 6.263 26 C -0.025 4.025 27 C -0.202 4.202 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.265 0.735 36 H 0.131 0.869 37 H 0.155 0.845 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.683 -12.668 17.502 26.698 hybrid contribution 1.944 -0.312 0.361 2.002 sum -13.739 -12.979 17.864 26.007 Atomic orbital electron populations 1.24046 0.95970 1.02566 1.00546 1.22951 0.96247 0.98121 1.00436 1.20816 0.98190 0.96673 0.98200 1.21761 0.98048 0.92633 1.01493 1.20768 0.90014 1.05991 0.78894 0.83687 1.55613 1.63614 1.26802 1.39393 1.04539 0.74437 0.73931 0.75372 1.93496 1.37446 1.79806 1.85195 1.93566 1.70810 1.82640 1.50197 1.30146 1.13837 1.10106 1.15949 1.18800 1.01611 0.86095 0.97561 1.20459 0.93730 1.46201 0.94159 0.94394 1.25712 0.97531 0.93546 0.99531 1.70028 1.07731 1.48933 1.30369 0.86344 0.78436 0.79370 0.82778 1.19989 1.21204 1.13412 1.23121 0.92366 1.02335 1.02744 1.23111 1.00583 1.00594 0.95693 1.24773 0.88502 0.72420 0.86244 1.90742 1.17578 1.45152 1.87531 1.86497 1.42185 1.82975 1.14622 1.23354 0.92851 1.02465 0.83870 1.21818 1.01092 1.04054 0.93219 0.87395 0.88379 0.86408 0.90502 0.91487 0.89390 0.86769 0.73496 0.86890 0.84471 0.92277 0.89467 0.86904 0.87806 0.89676 0.91184 0.91794 0.91084 0.90660 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 14.32 67.78 0.97 -1.62 16 2 C -0.16 -2.29 9.52 25.65 0.24 -2.05 16 3 C -0.10 -1.71 5.54 29.85 0.17 -1.54 16 4 C -0.10 -1.51 4.76 30.59 0.15 -1.36 16 5 C 0.15 3.30 2.71 44.24 0.12 3.42 16 6 H 0.15 2.78 7.48 -2.39 -0.02 2.76 16 7 N -1.09 -31.19 4.30 -172.52 -0.74 -31.93 16 8 S 2.62 105.91 5.20 -56.49 -0.29 105.62 16 9 O -0.97 -39.08 17.39 -127.65 -2.22 -41.30 16 10 O -0.98 -50.55 17.62 -127.65 -2.25 -52.80 16 11 C -0.57 -23.23 4.29 71.98 0.31 -22.92 16 12 C -0.04 -1.76 0.79 -52.93 -0.04 -1.80 16 13 C -0.51 -29.85 8.65 25.60 0.22 -29.63 16 14 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 15 C 0.04 2.23 5.47 84.65 0.46 2.69 16 16 N -0.93 -60.63 13.96 21.45 0.30 -60.33 16 17 Si 0.91 44.79 24.95 68.60 1.71 46.50 16 18 H -0.27 -13.47 7.03 99.48 0.70 -12.77 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 20 H -0.21 -9.18 5.74 99.48 0.57 -8.61 16 21 C -0.17 -6.58 9.96 30.62 0.30 -6.28 16 22 C -0.16 -6.27 8.06 30.62 0.25 -6.02 16 23 C 0.44 10.48 6.59 71.23 0.47 10.95 16 24 O -0.52 -16.20 14.77 21.98 0.32 -15.88 16 25 O -0.35 -6.68 10.03 -51.44 -0.52 -7.20 16 26 C 0.05 0.80 6.19 71.98 0.45 1.25 16 27 C -0.14 -1.44 10.29 71.98 0.74 -0.70 16 28 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.10 1.29 7.84 -2.91 -0.02 1.26 16 30 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.08 1.29 7.79 -2.38 -0.02 1.27 16 32 H 0.07 1.33 7.75 -2.39 -0.02 1.32 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.27 7.99 -2.38 -0.02 1.25 16 35 H 0.43 10.82 8.80 -96.74 -0.85 9.97 16 36 H 0.11 4.98 4.89 -2.39 -0.01 4.97 16 37 H 0.14 4.40 7.35 -2.39 -0.02 4.38 16 38 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 39 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 40 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 41 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 44 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.10 0.65 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -81.61 399.02 1.08 -80.52 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.03 Total: 32.42 kcal Atomic # 6 Polarization: -60.42 SS G_CDS: 4.80 Total: -55.62 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -0.44 Total: -92.27 kcal Atomic # 8 Polarization: -112.52 SS G_CDS: -4.66 Total: -117.18 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.71 Total: 46.50 kcal Atomic # 16 Polarization: 105.91 SS G_CDS: -0.29 Total: 105.62 kcal Total: -81.61 1.08 -80.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451992643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.179 kcal (2) G-P(sol) polarization free energy of solvation -81.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds