Wall clock time and date at job start Wed Apr 1 2020 03:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34222 * 117.00537 * 2 1 4 4 O 1.20834 * 119.99796 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00545 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46885 * 303.22621 * 5 3 2 7 7 S 1.81400 * 109.47409 * 305.38505 * 6 5 3 8 8 O 1.42098 * 110.54057 * 64.63340 * 7 6 5 9 9 O 1.42106 * 110.54090 * 287.88475 * 7 6 5 10 10 N 1.65602 * 104.45138 * 176.26264 * 7 6 5 11 11 C 1.36928 * 119.99949 * 96.63230 * 10 7 6 12 12 H 1.08005 * 120.00216 * 237.90750 * 11 10 7 13 13 C 1.38811 * 120.00246 * 57.91347 * 11 10 7 14 14 N 1.31615 * 120.00041 * 199.44152 * 13 11 10 15 15 Si 1.86801 * 119.99847 * 19.43793 * 13 11 10 16 16 H 1.48493 * 109.47476 * 263.88312 * 15 13 11 17 17 H 1.48501 * 109.46906 * 23.88521 * 15 13 11 18 18 H 1.48500 * 109.47069 * 143.88072 * 15 13 11 19 19 C 1.46500 * 119.99625 * 276.63789 * 10 7 6 20 20 C 1.52999 * 117.49537 * 193.12882 * 19 10 7 21 21 C 1.52998 * 117.50072 * 124.50559 * 19 10 7 22 22 C 1.52999 * 109.46643 * 63.22405 * 5 3 2 23 23 C 1.53003 * 109.46807 * 180.02562 * 22 5 3 24 24 C 1.53008 * 109.47143 * 300.00213 * 23 22 5 25 25 C 1.52998 * 109.46981 * 59.99906 * 24 23 22 26 26 C 1.52996 * 109.47081 * 183.22619 * 5 3 2 27 27 H 1.09003 * 109.46983 * 300.00082 * 1 2 3 28 28 H 1.09005 * 109.47319 * 59.99414 * 1 2 3 29 29 H 1.09006 * 109.47657 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46954 * 185.38228 * 6 5 3 31 31 H 1.09008 * 109.47048 * 65.38588 * 6 5 3 32 32 H 0.97002 * 119.99916 * 179.97438 * 14 13 11 33 33 H 1.08998 * 115.55060 * 338.83139 * 19 10 7 34 34 H 1.08997 * 117.49974 * 359.97438 * 20 19 10 35 35 H 1.09006 * 117.49751 * 145.01722 * 20 19 10 36 36 H 1.09002 * 117.50113 * 214.97563 * 21 19 10 37 37 H 1.08999 * 117.49780 * 359.97424 * 21 19 10 38 38 H 1.08997 * 109.47452 * 299.99917 * 22 5 3 39 39 H 1.09000 * 109.47356 * 60.00773 * 22 5 3 40 40 H 1.09001 * 109.47108 * 180.02562 * 23 22 5 41 41 H 1.08992 * 109.47244 * 60.00370 * 23 22 5 42 42 H 1.09000 * 109.46646 * 299.99910 * 24 23 22 43 43 H 1.09000 * 109.46904 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.46512 * 180.02562 * 25 24 23 45 45 H 1.08992 * 109.46926 * 60.00136 * 25 24 23 46 46 H 1.09000 * 109.47483 * 299.99572 * 26 5 3 47 47 H 1.09000 * 109.47539 * 60.00152 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1165 0.5124 1.2076 7 16 3.3495 1.1465 2.7243 8 8 1.9530 0.8838 2.7242 9 8 3.8518 2.4392 3.0342 10 7 3.9475 0.1771 3.9263 11 6 5.0262 0.5870 4.6634 12 1 5.9201 -0.0185 4.6953 13 6 4.9710 1.7806 5.3698 14 7 6.0834 2.3694 5.7550 15 14 3.3180 2.5514 5.7736 16 1 2.9880 3.5782 4.7529 17 1 2.2691 1.5002 5.7754 18 1 3.3829 3.1883 7.1135 19 6 3.3225 -1.1191 4.2010 20 6 3.7082 -1.8281 5.5007 21 6 4.2186 -2.3585 4.1594 22 6 4.1101 0.6522 -1.2869 23 6 5.6380 0.7317 -1.2861 24 6 6.0725 2.1965 -1.2047 25 6 5.5287 2.8190 0.0828 26 6 4.0002 2.7397 0.0816 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 5.1965 0.6489 1.2621 31 1 3.8893 -0.5485 1.1017 32 1 6.0448 3.2038 6.2483 33 1 2.2954 -1.2289 3.8531 34 1 4.4273 -1.3303 6.1513 35 1 2.9347 -2.4044 6.0084 36 1 3.7809 -3.2838 3.7847 37 1 5.2731 -2.2096 3.9274 38 1 3.8010 -0.3914 -1.3447 39 1 3.7182 1.1954 -2.1469 40 1 6.0254 0.2886 -2.2035 41 1 6.0296 0.1883 -0.4263 42 1 5.6809 2.7399 -2.0647 43 1 7.1610 2.2531 -1.2046 44 1 5.8379 3.8626 0.1404 45 1 5.9203 2.2756 0.9426 46 1 3.6084 3.2828 -0.7783 47 1 3.6129 3.1832 0.9989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489267413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:09 Heat of formation + Delta-G solvation = -126.651708 kcal Electronic energy + Delta-G solvation = -32047.427783 eV Core-core repulsion = 27937.718557 eV Total energy + Delta-G solvation = -4109.709226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.76575 -38.43025 -37.36303 -36.15126 -35.92907 -34.75532 -33.33981 -32.37593 -31.27588 -30.70792 -27.54277 -27.05164 -24.83624 -23.54775 -22.60805 -21.68405 -20.68539 -20.64145 -19.18888 -18.67765 -17.63887 -16.97826 -16.78580 -16.28686 -15.96926 -15.52107 -15.21264 -14.75101 -14.52531 -14.16786 -14.10983 -13.85554 -13.59167 -13.39825 -13.01996 -12.96406 -12.69893 -12.50078 -12.19148 -11.94628 -11.82963 -11.75062 -11.51143 -11.46254 -11.28372 -11.09189 -10.93768 -10.78414 -10.76957 -10.62629 -10.50257 -10.37124 -10.24390 -10.12977 -10.09694 -9.98402 -9.88817 -9.60770 -9.25696 -8.77651 -7.67285 -6.62661 -4.38422 1.34969 2.38804 2.90008 3.29049 3.44795 3.53714 3.79067 4.31684 4.50388 4.53942 4.63546 4.73187 4.81889 4.95601 5.10817 5.15851 5.21669 5.29402 5.31605 5.35717 5.45481 5.49871 5.59127 5.60786 5.67121 5.71232 5.73172 5.77900 5.83178 5.94364 5.99571 6.10127 6.15826 6.20243 6.22105 6.23782 6.24743 6.38736 6.46862 6.61550 6.64392 6.68531 6.91581 7.13713 7.63594 7.94760 8.06982 8.88298 9.01615 10.38277 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.006207 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.041286 B = 4510.044361 C = 5088.476136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.458 3.542 4 O -0.499 6.499 5 C -0.026 4.026 6 C -0.646 4.646 7 S 2.465 3.535 8 O -0.993 6.993 9 O -0.943 6.943 10 N -0.809 5.809 11 C -0.270 4.270 12 H 0.094 0.906 13 C 0.104 3.896 14 N -0.815 5.815 15 Si 0.853 3.147 16 H -0.240 1.240 17 H -0.255 1.255 18 H -0.285 1.285 19 C 0.084 3.916 20 C -0.167 4.167 21 C -0.204 4.204 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.122 4.122 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.283 0.717 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -6.581 -10.876 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.300 3.700 4 O -0.386 6.386 5 C -0.028 4.028 6 C -0.766 4.766 7 S 2.570 3.430 8 O -0.983 6.983 9 O -0.932 6.932 10 N -0.631 5.631 11 C -0.417 4.417 12 H 0.112 0.888 13 C -0.114 4.114 14 N -0.450 5.450 15 Si 0.677 3.323 16 H -0.164 1.164 17 H -0.179 1.179 18 H -0.212 1.212 19 C -0.025 4.025 20 C -0.207 4.207 21 C -0.243 4.243 22 C -0.137 4.137 23 C -0.157 4.157 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.160 4.160 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.872 -5.401 -10.996 12.583 hybrid contribution -0.510 0.098 -0.165 0.545 sum -3.383 -5.303 -11.161 12.811 Atomic orbital electron populations 1.23243 0.76563 1.03356 1.02568 1.86418 1.23326 1.32810 1.83502 1.23764 0.91768 0.81880 0.72584 1.90638 1.66937 1.36356 1.44690 1.20179 0.86262 0.98516 0.97849 1.31165 1.15088 1.10648 1.19693 1.13216 0.76129 0.78194 0.75436 1.93381 1.32702 1.86142 1.86040 1.93457 1.81196 1.38018 1.80514 1.52546 1.42731 1.28754 1.39069 1.18717 0.93593 1.06603 1.22811 0.88807 1.25804 0.97872 0.95483 0.92253 1.69766 1.28122 1.15847 1.31230 0.87102 0.84122 0.82427 0.78611 1.16374 1.17911 1.21169 1.21541 0.95339 0.82973 1.02630 1.23143 1.03624 1.02713 0.91183 1.23296 1.01033 0.97788 1.02229 1.21527 0.96703 1.01048 0.94376 1.21573 0.94439 0.97296 1.02354 1.21603 1.00496 0.95699 0.98132 1.21567 0.93919 1.01797 0.98305 1.21814 0.97341 0.92108 1.04704 0.90998 0.92585 0.88386 0.84369 0.85861 0.90640 0.86146 0.87020 0.89632 0.89625 0.88564 0.90610 0.91573 0.91643 0.90839 0.92154 0.91652 0.91013 0.90395 0.90587 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.34 -6.04 10.16 -41.42 -0.42 -6.46 16 3 C 0.46 8.88 4.32 36.01 0.16 9.04 16 4 O -0.50 -10.82 15.73 -18.76 -0.30 -11.11 16 5 C -0.03 -0.45 0.49 -155.66 -0.08 -0.52 16 6 C -0.65 -11.84 4.36 37.16 0.16 -11.68 16 7 S 2.47 58.05 3.54 -107.50 -0.38 57.66 16 8 O -0.99 -24.88 14.99 -60.24 -0.90 -25.78 16 9 O -0.94 -24.96 10.73 -57.54 -0.62 -25.58 16 10 N -0.81 -18.60 2.29 -53.43 -0.12 -18.72 16 11 C -0.27 -6.75 7.81 -15.06 -0.12 -6.87 16 12 H 0.09 2.36 8.06 -52.48 -0.42 1.94 16 13 C 0.10 2.79 4.63 -17.43 -0.08 2.71 16 14 N -0.82 -22.14 13.97 55.49 0.78 -21.36 16 15 Si 0.85 22.32 25.26 -169.99 -4.29 18.03 16 16 H -0.24 -6.65 6.32 56.52 0.36 -6.29 16 17 H -0.26 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.08 1.65 6.40 -67.93 -0.43 1.21 16 20 C -0.17 -2.92 9.86 -26.73 -0.26 -3.18 16 21 C -0.20 -3.28 10.19 -26.73 -0.27 -3.56 16 22 C -0.10 -1.32 4.69 -26.73 -0.13 -1.44 16 23 C -0.12 -1.42 5.65 -26.73 -0.15 -1.57 16 24 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 25 C -0.12 -1.85 5.65 -26.71 -0.15 -2.00 16 26 C -0.12 -2.18 3.74 -26.71 -0.10 -2.28 16 27 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.14 2.38 4.83 -51.93 -0.25 2.13 16 31 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 32 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.12 2.30 7.37 -51.93 -0.38 1.92 16 34 H 0.11 2.13 7.16 -51.93 -0.37 1.76 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.33 6.31 -51.93 -0.33 1.01 16 46 H 0.08 1.23 8.07 -51.93 -0.42 0.82 16 47 H 0.09 1.85 5.79 -51.93 -0.30 1.55 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -31.55 369.75 -8.72 -40.27 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.49 Total: 7.67 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.55 Total: -20.19 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.65 Total: -40.08 kcal Atomic # 8 Polarization: -66.70 SS G_CDS: -2.24 Total: -68.93 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.29 Total: 18.03 kcal Atomic # 16 Polarization: 58.05 SS G_CDS: -0.38 Total: 57.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.55 -8.72 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489267413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.383 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds