Wall clock time and date at job start Wed Apr 1 2020 03:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34222 * 117.00537 * 2 1 4 4 O 1.20834 * 119.99796 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00545 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46885 * 303.22621 * 5 3 2 7 7 S 1.81400 * 109.47409 * 305.38505 * 6 5 3 8 8 O 1.42098 * 110.54057 * 64.63340 * 7 6 5 9 9 O 1.42106 * 110.54090 * 287.88475 * 7 6 5 10 10 N 1.65602 * 104.45138 * 176.26264 * 7 6 5 11 11 C 1.36928 * 119.99949 * 96.63230 * 10 7 6 12 12 H 1.08005 * 120.00216 * 237.90750 * 11 10 7 13 13 C 1.38811 * 120.00246 * 57.91347 * 11 10 7 14 14 N 1.31615 * 120.00041 * 199.44152 * 13 11 10 15 15 Si 1.86801 * 119.99847 * 19.43793 * 13 11 10 16 16 H 1.48493 * 109.47476 * 263.88312 * 15 13 11 17 17 H 1.48501 * 109.46906 * 23.88521 * 15 13 11 18 18 H 1.48500 * 109.47069 * 143.88072 * 15 13 11 19 19 C 1.46500 * 119.99625 * 276.63789 * 10 7 6 20 20 C 1.52999 * 117.49537 * 193.12882 * 19 10 7 21 21 C 1.52998 * 117.50072 * 124.50559 * 19 10 7 22 22 C 1.52999 * 109.46643 * 63.22405 * 5 3 2 23 23 C 1.53003 * 109.46807 * 180.02562 * 22 5 3 24 24 C 1.53008 * 109.47143 * 300.00213 * 23 22 5 25 25 C 1.52998 * 109.46981 * 59.99906 * 24 23 22 26 26 C 1.52996 * 109.47081 * 183.22619 * 5 3 2 27 27 H 1.09003 * 109.46983 * 300.00082 * 1 2 3 28 28 H 1.09005 * 109.47319 * 59.99414 * 1 2 3 29 29 H 1.09006 * 109.47657 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46954 * 185.38228 * 6 5 3 31 31 H 1.09008 * 109.47048 * 65.38588 * 6 5 3 32 32 H 0.97002 * 119.99916 * 179.97438 * 14 13 11 33 33 H 1.08998 * 115.55060 * 338.83139 * 19 10 7 34 34 H 1.08997 * 117.49974 * 359.97438 * 20 19 10 35 35 H 1.09006 * 117.49751 * 145.01722 * 20 19 10 36 36 H 1.09002 * 117.50113 * 214.97563 * 21 19 10 37 37 H 1.08999 * 117.49780 * 359.97424 * 21 19 10 38 38 H 1.08997 * 109.47452 * 299.99917 * 22 5 3 39 39 H 1.09000 * 109.47356 * 60.00773 * 22 5 3 40 40 H 1.09001 * 109.47108 * 180.02562 * 23 22 5 41 41 H 1.08992 * 109.47244 * 60.00370 * 23 22 5 42 42 H 1.09000 * 109.46646 * 299.99910 * 24 23 22 43 43 H 1.09000 * 109.46904 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.46512 * 180.02562 * 25 24 23 45 45 H 1.08992 * 109.46926 * 60.00136 * 25 24 23 46 46 H 1.09000 * 109.47483 * 299.99572 * 26 5 3 47 47 H 1.09000 * 109.47539 * 60.00152 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1165 0.5124 1.2076 7 16 3.3495 1.1465 2.7243 8 8 1.9530 0.8838 2.7242 9 8 3.8518 2.4392 3.0342 10 7 3.9475 0.1771 3.9263 11 6 5.0262 0.5870 4.6634 12 1 5.9201 -0.0185 4.6953 13 6 4.9710 1.7806 5.3698 14 7 6.0834 2.3694 5.7550 15 14 3.3180 2.5514 5.7736 16 1 2.9880 3.5782 4.7529 17 1 2.2691 1.5002 5.7754 18 1 3.3829 3.1883 7.1135 19 6 3.3225 -1.1191 4.2010 20 6 3.7082 -1.8281 5.5007 21 6 4.2186 -2.3585 4.1594 22 6 4.1101 0.6522 -1.2869 23 6 5.6380 0.7317 -1.2861 24 6 6.0725 2.1965 -1.2047 25 6 5.5287 2.8190 0.0828 26 6 4.0002 2.7397 0.0816 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 5.1965 0.6489 1.2621 31 1 3.8893 -0.5485 1.1017 32 1 6.0448 3.2038 6.2483 33 1 2.2954 -1.2289 3.8531 34 1 4.4273 -1.3303 6.1513 35 1 2.9347 -2.4044 6.0084 36 1 3.7809 -3.2838 3.7847 37 1 5.2731 -2.2096 3.9274 38 1 3.8010 -0.3914 -1.3447 39 1 3.7182 1.1954 -2.1469 40 1 6.0254 0.2886 -2.2035 41 1 6.0296 0.1883 -0.4263 42 1 5.6809 2.7399 -2.0647 43 1 7.1610 2.2531 -1.2046 44 1 5.8379 3.8626 0.1404 45 1 5.9203 2.2756 0.9426 46 1 3.6084 3.2828 -0.7783 47 1 3.6129 3.1832 0.9989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489267413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:08 Heat of formation + Delta-G solvation = -146.612532 kcal Electronic energy + Delta-G solvation = -32048.293349 eV Core-core repulsion = 27937.718557 eV Total energy + Delta-G solvation = -4110.574792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.18154 -39.69917 -38.92592 -37.93685 -37.60510 -36.75686 -35.14578 -33.63298 -33.08230 -31.85514 -28.80455 -28.47896 -26.69655 -24.82407 -23.75106 -23.00821 -22.27862 -21.92433 -21.05924 -20.04158 -19.32116 -18.59080 -18.24067 -17.91959 -17.47644 -17.31783 -16.99606 -16.26674 -16.03826 -15.55171 -15.46360 -15.24963 -15.19516 -14.96805 -14.74801 -14.30546 -13.99075 -13.76387 -13.64188 -13.55064 -13.32234 -13.24396 -13.19725 -13.04662 -12.82829 -12.75106 -12.60629 -12.33335 -12.25947 -12.13002 -12.07199 -11.90978 -11.83753 -11.73113 -11.47878 -11.28624 -11.15986 -11.08380 -10.90320 -10.76316 -9.38733 -8.63954 -6.36932 -0.49359 0.89864 1.15581 1.29098 1.39191 1.56291 1.96941 2.25582 2.81226 2.94756 3.18070 3.21708 3.34262 3.49064 3.55608 3.80406 4.04415 4.11698 4.16588 4.22533 4.24669 4.25882 4.32663 4.33112 4.38091 4.41814 4.46268 4.57155 4.64137 4.66337 4.69961 4.79681 4.97915 5.00603 5.01024 5.16678 5.20420 5.21828 5.22738 5.31328 5.34942 5.45140 5.53967 5.57928 5.87148 6.09286 6.49604 6.93150 7.13785 8.42383 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.006207 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.041286 B = 4510.044361 C = 5088.476136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.450 3.550 4 O -0.533 6.533 5 C -0.030 4.030 6 C -0.618 4.618 7 S 2.481 3.519 8 O -1.012 7.012 9 O -0.978 6.978 10 N -0.825 5.825 11 C -0.274 4.274 12 H 0.090 0.910 13 C 0.082 3.918 14 N -0.855 5.855 15 Si 0.860 3.140 16 H -0.272 1.272 17 H -0.259 1.259 18 H -0.269 1.269 19 C 0.041 3.959 20 C -0.170 4.170 21 C -0.168 4.168 22 C -0.094 4.094 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.128 4.128 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.283 0.717 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -9.741 -14.179 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.293 3.707 4 O -0.422 6.422 5 C -0.032 4.032 6 C -0.745 4.745 7 S 2.588 3.412 8 O -1.002 7.002 9 O -0.968 6.968 10 N -0.650 5.650 11 C -0.416 4.416 12 H 0.108 0.892 13 C -0.132 4.132 14 N -0.492 5.492 15 Si 0.686 3.314 16 H -0.199 1.199 17 H -0.183 1.183 18 H -0.195 1.195 19 C -0.066 4.066 20 C -0.210 4.210 21 C -0.207 4.207 22 C -0.132 4.132 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.165 4.165 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.551 -8.575 -14.134 16.727 hybrid contribution -0.840 0.989 0.575 1.419 sum -3.391 -7.586 -13.559 15.902 Atomic orbital electron populations 1.23586 0.74951 1.06059 1.02061 1.86401 1.24949 1.31663 1.82884 1.24253 0.92645 0.81978 0.71811 1.90625 1.67796 1.37524 1.46291 1.20368 0.85252 0.98188 0.99424 1.30807 1.15375 1.12270 1.16052 1.10959 0.75595 0.77260 0.77375 1.93381 1.33384 1.86273 1.87144 1.93451 1.81544 1.39856 1.81948 1.52420 1.42479 1.29870 1.40219 1.18481 0.93573 1.05979 1.23606 0.89217 1.26020 0.97570 0.96414 0.93178 1.69770 1.28051 1.16901 1.34442 0.86992 0.84426 0.81499 0.78473 1.19857 1.18321 1.19475 1.21860 0.96387 0.82899 1.05443 1.23202 1.04004 1.02564 0.91182 1.23359 1.00239 0.97018 1.00065 1.21628 0.97755 1.01866 0.91946 1.21641 0.93083 0.96895 1.03994 1.21611 1.01505 0.96071 0.96269 1.21602 0.92229 1.02169 0.99789 1.21849 0.98970 0.92687 1.03026 0.93701 0.91007 0.84111 0.82581 0.82610 0.90718 0.85884 0.89316 0.86790 0.85683 0.88923 0.88729 0.89984 0.88190 0.91213 0.90549 0.89908 0.90980 0.92500 0.89307 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.34 -11.13 10.16 -49.25 -0.50 -11.63 16 3 C 0.45 16.73 4.32 71.24 0.31 17.04 16 4 O -0.53 -23.09 15.73 21.94 0.35 -22.75 16 5 C -0.03 -0.97 0.49 -52.93 -0.03 -0.99 16 6 C -0.62 -21.22 4.36 71.98 0.31 -20.90 16 7 S 2.48 117.58 3.54 -56.49 -0.20 117.38 16 8 O -1.01 -51.13 14.99 -125.06 -1.87 -53.00 16 9 O -0.98 -54.02 10.73 -127.65 -1.37 -55.39 16 10 N -0.83 -38.04 2.29 -322.95 -0.74 -38.77 16 11 C -0.27 -14.04 7.81 84.03 0.66 -13.38 16 12 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 13 C 0.08 4.56 4.63 84.86 0.39 4.95 16 14 N -0.86 -48.61 13.97 21.65 0.30 -48.31 16 15 Si 0.86 47.09 25.26 68.60 1.73 48.82 16 16 H -0.27 -16.21 6.32 99.48 0.63 -15.58 16 17 H -0.26 -14.06 7.11 99.48 0.71 -13.35 16 18 H -0.27 -13.71 7.11 99.48 0.71 -13.00 16 19 C 0.04 1.57 6.40 44.99 0.29 1.86 16 20 C -0.17 -5.69 9.86 30.59 0.30 -5.39 16 21 C -0.17 -4.86 10.19 30.59 0.31 -4.55 16 22 C -0.09 -2.07 4.69 30.59 0.14 -1.92 16 23 C -0.12 -2.21 5.65 30.60 0.17 -2.04 16 24 C -0.12 -2.41 5.92 30.60 0.18 -2.23 16 25 C -0.12 -3.60 5.65 30.61 0.17 -3.43 16 26 C -0.13 -4.48 3.74 30.61 0.11 -4.36 16 27 H 0.04 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.07 1.68 8.13 -2.38 -0.02 1.66 16 29 H 0.14 2.47 8.14 -2.38 -0.02 2.46 16 30 H 0.16 5.01 4.83 -2.39 -0.01 5.00 16 31 H 0.16 4.43 8.14 -2.39 -0.02 4.42 16 32 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.12 4.53 7.37 -2.39 -0.02 4.51 16 34 H 0.09 3.40 7.16 -2.39 -0.02 3.38 16 35 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.37 6.55 -2.39 -0.02 1.36 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 1.91 6.31 -2.39 -0.02 1.90 16 46 H 0.09 2.82 8.07 -2.39 -0.02 2.80 16 47 H 0.04 1.88 5.79 -2.39 -0.01 1.87 16 Total: -1.00 -74.31 369.75 3.11 -71.20 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.89 Total: 25.91 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 4.53 Total: -33.45 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -0.44 Total: -87.08 kcal Atomic # 8 Polarization: -139.37 SS G_CDS: -3.40 Total: -142.77 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.73 Total: 48.82 kcal Atomic # 16 Polarization: 117.58 SS G_CDS: -0.20 Total: 117.38 kcal Total: -74.31 3.11 -71.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489267413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.415 kcal (2) G-P(sol) polarization free energy of solvation -74.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds