Wall clock time and date at job start Wed Apr 1 2020 03:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99763 * 2 1 4 4 N 1.46502 * 109.47033 * 125.00420 * 3 2 1 5 5 C 1.46493 * 119.99751 * 84.99916 * 4 3 2 6 6 C 1.50706 * 109.47128 * 85.00265 * 5 4 3 7 7 H 1.08005 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47057 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 300.00068 * 10 8 6 13 13 H 1.48504 * 109.47102 * 60.00417 * 10 8 6 14 14 S 1.65596 * 119.99966 * 265.00431 * 4 3 2 15 15 O 1.42095 * 104.28078 * 26.06959 * 14 4 3 16 16 O 1.42105 * 104.27808 * 153.92976 * 14 4 3 17 17 C 1.81398 * 104.45114 * 269.99730 * 14 4 3 18 18 H 1.09004 * 109.46933 * 300.00461 * 17 14 4 19 19 C 1.53000 * 109.47208 * 59.99863 * 17 14 4 20 20 C 1.52994 * 109.47454 * 179.97438 * 19 17 14 21 21 C 1.52990 * 109.47616 * 300.00586 * 20 19 17 22 22 C 1.52997 * 109.47171 * 59.99629 * 21 20 19 23 23 C 1.52990 * 109.47619 * 180.02562 * 17 14 4 24 24 H 1.08997 * 109.47443 * 59.99848 * 23 17 14 25 25 C 1.50707 * 109.47131 * 299.99999 * 23 17 14 26 26 O 1.20822 * 119.99871 * 0.02562 * 25 23 17 27 27 O 1.34228 * 120.00137 * 179.97438 * 25 23 17 28 28 C 1.45206 * 116.99796 * 180.02562 * 27 25 23 29 29 H 1.08001 * 120.00299 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.99736 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00299 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.47170 * 5.00689 * 3 2 1 33 33 H 1.08996 * 109.47631 * 245.00526 * 3 2 1 34 34 H 1.09001 * 109.47786 * 325.00538 * 5 4 3 35 35 H 1.09006 * 109.47401 * 205.00123 * 5 4 3 36 36 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 37 37 H 1.09004 * 109.47403 * 300.00549 * 19 17 14 38 38 H 1.09006 * 109.47047 * 60.00046 * 19 17 14 39 39 H 1.08997 * 109.47084 * 179.97438 * 20 19 17 40 40 H 1.09004 * 109.46689 * 60.00596 * 20 19 17 41 41 H 1.09004 * 109.47100 * 299.99759 * 21 20 19 42 42 H 1.08994 * 109.47475 * 179.97438 * 21 20 19 43 43 H 1.09006 * 109.47530 * 180.02562 * 22 21 20 44 44 H 1.08999 * 109.47664 * 60.00227 * 22 21 20 45 45 H 1.09001 * 109.46939 * 59.99898 * 28 27 25 46 46 H 1.09003 * 109.46476 * 180.02562 * 28 27 25 47 47 H 1.08994 * 109.46682 * 299.99655 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3217 0.7268 1.0022 6 6 5.2697 1.7228 0.3855 7 1 4.9181 2.7079 0.1163 8 6 6.5859 1.3766 0.1649 9 7 7.0140 0.1769 0.4922 10 14 7.7608 2.6109 -0.6002 11 1 9.1072 1.9981 -0.7299 12 1 7.2626 3.0016 -1.9435 13 1 7.8467 3.8147 0.2652 14 16 2.5443 2.0460 2.5562 15 8 1.1266 1.9507 2.5641 16 8 3.3284 1.3869 3.5412 17 6 3.0651 3.7747 2.3803 18 1 4.1436 3.8154 2.2270 19 6 2.3553 4.4014 1.1784 20 6 2.7940 5.8596 1.0304 21 6 2.4291 6.6334 2.2987 22 6 3.1389 6.0068 3.5004 23 6 2.7011 4.5488 3.6487 24 1 3.2071 4.1023 4.5047 25 6 1.2101 4.4925 3.8611 26 8 0.5106 3.8942 3.0785 27 8 0.6594 5.1061 4.9203 28 6 -0.7825 5.0097 5.0618 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6212 1.4028 -0.9314 34 1 4.2584 -0.1562 0.3664 35 1 4.6875 0.4393 1.9880 36 1 6.4038 -0.4642 0.8892 37 1 2.6150 3.8498 0.2748 38 1 1.2768 4.3606 1.3316 39 1 2.2887 6.3058 0.1739 40 1 3.8725 5.9007 0.8773 41 1 1.3506 6.5923 2.4517 42 1 2.7420 7.6721 2.1933 43 1 2.8785 6.5578 4.4042 44 1 4.2173 6.0479 3.3476 45 1 -1.0698 3.9618 5.1483 46 1 -1.0965 5.5481 5.9561 47 1 -1.2634 5.4473 4.1871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490133884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:13 Heat of formation + Delta-G solvation = -136.505366 kcal Electronic energy + Delta-G solvation = -31507.235549 eV Core-core repulsion = 27397.099036 eV Total energy + Delta-G solvation = -4110.136513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00374 -38.09576 -36.58521 -36.48130 -36.07732 -35.17544 -33.43795 -31.92939 -31.50083 -30.97986 -27.81286 -27.02025 -24.77565 -24.06131 -23.00564 -22.50301 -21.47081 -19.82914 -19.45845 -18.30596 -17.35877 -17.27098 -16.94034 -16.53075 -16.42012 -15.90740 -15.41117 -14.87885 -14.47973 -14.29813 -14.05389 -13.84853 -13.75345 -13.55106 -13.30242 -13.08447 -12.69234 -12.50782 -12.36119 -12.26164 -12.06142 -11.96250 -11.66263 -11.49245 -11.42510 -11.36997 -11.15820 -11.01456 -10.97231 -10.92193 -10.57907 -10.52343 -10.44840 -10.29067 -10.17053 -9.94321 -9.72417 -9.28475 -8.97607 -8.45874 -7.90281 -6.45962 -4.21269 0.91524 2.19161 2.59222 2.65533 3.35738 3.36942 3.42513 3.56319 4.18584 4.41281 4.44501 4.48151 4.67889 4.81221 4.89415 5.03259 5.05566 5.12249 5.20623 5.24647 5.28085 5.31620 5.35326 5.43513 5.49182 5.49704 5.67433 5.75499 5.77920 5.88324 6.01076 6.03617 6.09767 6.12535 6.21600 6.26221 6.27716 6.39694 6.52640 6.99590 7.05765 7.14841 7.27329 7.50493 7.73486 7.94702 8.33982 8.71506 9.51357 10.91329 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.005383 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.240299 B = 5200.015964 C = 6499.868980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.158 3.842 4 N -0.974 5.974 5 C 0.232 3.768 6 C -0.624 4.624 7 H 0.057 0.943 8 C 0.024 3.976 9 N -0.904 5.904 10 Si 1.066 2.934 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.287 1.287 14 S 2.604 3.396 15 O -0.932 6.932 16 O -0.966 6.966 17 C -0.582 4.582 18 H 0.156 0.844 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.065 4.065 24 H 0.116 0.884 25 C 0.424 3.576 26 O -0.441 6.441 27 O -0.358 6.358 28 C 0.034 3.966 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.042 0.958 36 H 0.271 0.729 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 12.410 4.128 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.182 4.182 3 C 0.032 3.968 4 N -0.811 5.811 5 C 0.109 3.891 6 C -0.663 4.663 7 H 0.075 0.925 8 C -0.182 4.182 9 N -0.539 5.539 10 Si 0.894 3.106 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.214 1.214 14 S 2.696 3.304 15 O -0.922 6.922 16 O -0.957 6.957 17 C -0.689 4.689 18 H 0.174 0.826 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.139 4.139 23 C -0.085 4.085 24 H 0.134 0.866 25 C 0.264 3.736 26 O -0.325 6.325 27 O -0.276 6.276 28 C -0.060 4.060 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.117 0.883 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.218 11.988 4.116 16.926 hybrid contribution -1.260 0.146 0.119 1.274 sum -12.477 12.134 4.235 17.913 Atomic orbital electron populations 1.23732 0.95798 1.01420 1.01226 1.23389 0.96047 0.99593 0.99214 1.20218 0.90832 0.94687 0.91025 1.57256 1.24579 1.70477 1.28814 1.19283 0.77296 0.94295 0.98208 1.22382 0.96688 1.01105 1.46153 0.92460 1.25763 0.97236 0.99431 0.95785 1.70779 1.39202 1.05308 1.38629 0.83591 0.76236 0.74684 0.76138 1.20649 1.21360 1.21361 1.05241 0.74502 0.76472 0.74194 1.93642 1.27638 1.85172 1.85786 1.93551 1.72401 1.70991 1.58718 1.30599 1.12821 1.24787 1.00685 0.82640 1.21575 1.01496 0.96630 0.95291 1.21473 1.01946 0.94575 0.97105 1.21593 1.00051 0.99416 0.94943 1.21464 1.01842 0.91257 0.99374 1.20768 0.88768 1.00829 0.98139 0.86573 1.23942 0.92405 0.77213 0.80050 1.90958 1.63205 1.35893 1.42450 1.86455 1.25150 1.69769 1.46195 1.23271 0.76876 1.03174 1.02646 0.88451 0.89070 0.87537 0.90680 0.89526 0.95335 0.94032 0.91842 0.89903 0.88626 0.91578 0.91189 0.92393 0.91222 0.90257 0.89640 0.91583 0.88292 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 14.32 29.01 0.42 -2.42 16 2 C -0.16 -2.82 9.84 -36.03 -0.35 -3.18 16 3 C 0.16 2.88 4.73 -5.19 -0.02 2.85 16 4 N -0.97 -20.45 2.45 -116.94 -0.29 -20.74 16 5 C 0.23 5.73 4.72 -5.19 -0.02 5.70 16 6 C -0.62 -16.09 9.38 -34.44 -0.32 -16.42 16 7 H 0.06 1.40 7.81 -52.48 -0.41 0.99 16 8 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 9 N -0.90 -26.34 13.65 55.43 0.76 -25.59 16 10 Si 1.07 23.74 29.90 -169.99 -5.08 18.65 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 14 S 2.60 53.20 4.48 -107.50 -0.48 52.72 16 15 O -0.93 -19.59 13.05 -67.55 -0.88 -20.48 16 16 O -0.97 -23.10 16.53 -57.54 -0.95 -24.05 16 17 C -0.58 -9.59 2.55 -26.74 -0.07 -9.66 16 18 H 0.16 2.61 8.14 -51.92 -0.42 2.18 16 19 C -0.11 -1.66 4.19 -26.73 -0.11 -1.78 16 20 C -0.11 -1.37 5.92 -26.74 -0.16 -1.53 16 21 C -0.12 -1.32 5.70 -26.74 -0.15 -1.47 16 22 C -0.10 -1.12 5.39 -26.76 -0.14 -1.26 16 23 C -0.06 -0.91 2.65 -91.80 -0.24 -1.16 16 24 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 25 C 0.42 6.38 5.40 36.01 0.19 6.57 16 26 O -0.44 -7.67 9.47 -27.11 -0.26 -7.93 16 27 O -0.36 -4.62 10.46 -39.25 -0.41 -5.03 16 28 C 0.03 0.34 10.56 101.05 1.07 1.41 16 29 H 0.10 1.45 7.84 -52.49 -0.41 1.04 16 30 H 0.09 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.07 1.24 6.19 -51.93 -0.32 0.92 16 33 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 34 H 0.03 0.73 7.98 -51.93 -0.41 0.31 16 35 H 0.04 1.13 6.68 -51.93 -0.35 0.78 16 36 H 0.27 7.91 7.22 -40.82 -0.29 7.62 16 37 H 0.08 1.26 6.53 -51.93 -0.34 0.92 16 38 H 0.10 1.47 5.51 -51.93 -0.29 1.19 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.65 7.22 -51.93 -0.37 0.28 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -33.30 380.72 -9.37 -42.68 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.49 Total: 5.83 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -0.03 Total: -21.79 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.47 Total: -46.33 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -2.50 Total: -57.49 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.08 Total: 18.65 kcal Atomic # 16 Polarization: 53.20 SS G_CDS: -0.48 Total: 52.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.30 -9.37 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490133884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.830 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds