Wall clock time and date at job start Wed Apr 1 2020 03:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99797 * 2 1 4 4 N 1.46501 * 109.46827 * 125.00538 * 3 2 1 5 5 C 1.46498 * 120.00269 * 275.00212 * 4 3 2 6 6 C 1.50707 * 109.47081 * 275.61461 * 5 4 3 7 7 H 1.08000 * 119.99584 * 355.38902 * 6 5 4 8 8 C 1.37878 * 120.00118 * 175.38176 * 6 5 4 9 9 N 1.31515 * 119.99981 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00115 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47421 * 89.99368 * 10 8 6 12 12 H 1.48494 * 109.46983 * 209.99915 * 10 8 6 13 13 H 1.48508 * 109.47034 * 329.99846 * 10 8 6 14 14 S 1.65602 * 119.99975 * 94.99563 * 4 3 2 15 15 O 1.42109 * 104.27410 * 135.07076 * 14 4 3 16 16 O 1.42098 * 104.27822 * 7.21288 * 14 4 3 17 17 C 1.81394 * 104.45280 * 251.13769 * 14 4 3 18 18 H 1.09004 * 109.47643 * 292.35109 * 17 14 4 19 19 C 1.53001 * 109.46965 * 52.34822 * 17 14 4 20 20 C 1.53001 * 109.47187 * 179.97438 * 19 17 14 21 21 C 1.53002 * 109.46935 * 299.99786 * 20 19 17 22 22 C 1.52997 * 109.47238 * 60.00354 * 21 20 19 23 23 C 1.52998 * 109.47047 * 300.00018 * 22 21 20 24 24 H 1.09004 * 109.47166 * 300.00126 * 23 22 21 25 25 C 1.50695 * 109.47471 * 179.97438 * 23 22 21 26 26 O 1.20821 * 120.00671 * 239.99582 * 25 23 22 27 27 O 1.34235 * 119.99741 * 59.99880 * 25 23 22 28 28 C 1.45207 * 116.99901 * 180.02562 * 27 25 23 29 29 H 1.08001 * 119.99909 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00168 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99909 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47384 * 5.00745 * 3 2 1 33 33 H 1.09001 * 109.47319 * 244.99923 * 3 2 1 34 34 H 1.09001 * 109.47186 * 35.61191 * 5 4 3 35 35 H 1.08997 * 109.47913 * 155.61644 * 5 4 3 36 36 H 0.96996 * 120.00076 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.47203 * 300.00226 * 19 17 14 38 38 H 1.09003 * 109.47430 * 59.99889 * 19 17 14 39 39 H 1.09005 * 109.46806 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.47017 * 60.00212 * 20 19 17 41 41 H 1.08993 * 109.47151 * 299.99798 * 21 20 19 42 42 H 1.09005 * 109.46684 * 179.97438 * 21 20 19 43 43 H 1.09003 * 109.47074 * 59.99331 * 22 21 20 44 44 H 1.08996 * 109.47433 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47173 * 59.99514 * 28 27 25 46 46 H 1.08996 * 109.46884 * 179.97438 * 28 27 25 47 47 H 1.09003 * 109.46530 * 299.99810 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5287 1.7618 2.4523 6 6 2.5851 3.2653 2.5398 7 1 3.0020 3.8383 1.7248 8 6 2.1043 3.9092 3.6602 9 7 2.1531 5.2212 3.7364 10 14 1.3837 2.9180 5.0701 11 1 2.4596 2.5738 6.0340 12 1 0.3412 3.7213 5.7578 13 1 0.7774 1.6706 4.5391 14 16 4.5714 0.8757 0.9171 15 8 5.3201 1.8733 1.5982 16 8 4.6968 0.6965 -0.4869 17 6 4.7030 -0.7164 1.7764 18 1 4.5918 -0.5605 2.8495 19 6 3.6019 -1.6559 1.2808 20 6 3.7133 -2.9991 2.0050 21 6 5.0815 -3.6210 1.7186 22 6 6.1827 -2.6815 2.2142 23 6 6.0712 -1.3384 1.4900 24 1 6.1821 -1.4939 0.4169 25 6 7.1554 -0.4127 1.9786 26 8 6.8636 0.6365 2.5018 27 8 8.4454 -0.7539 1.8325 28 6 9.4359 0.1858 2.3269 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9314 34 1 1.5022 1.4274 2.6027 35 1 3.1682 1.3290 3.2215 36 1 1.8152 5.6742 4.5247 37 1 2.6272 -1.2127 1.4843 38 1 3.7130 -1.8119 0.2077 39 1 2.9285 -3.6683 1.6522 40 1 3.6023 -2.8435 3.0781 41 1 5.1924 -3.7766 0.6455 42 1 5.1610 -4.5777 2.2349 43 1 6.0717 -2.5259 3.2874 44 1 7.1574 -3.1247 2.0106 45 1 9.2920 0.3359 3.3969 46 1 10.4349 -0.2113 2.1472 47 1 9.3241 1.1379 1.8081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490133886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:18 Heat of formation + Delta-G solvation = -126.478583 kcal Electronic energy + Delta-G solvation = -31160.874271 eV Core-core repulsion = 27051.172553 eV Total energy + Delta-G solvation = -4109.701719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.80304 -38.40333 -36.81674 -36.36831 -36.25394 -35.12714 -33.17172 -31.92527 -31.73147 -31.23358 -28.02837 -27.78083 -25.04274 -24.13914 -23.27636 -21.86711 -21.13667 -20.15257 -19.75658 -18.06852 -17.64353 -17.24780 -16.90368 -16.75067 -16.35494 -15.89200 -15.72602 -14.92044 -14.60883 -14.39393 -14.19887 -14.11468 -13.85266 -13.51222 -13.34063 -13.11801 -12.81856 -12.69321 -12.47097 -12.18752 -12.07068 -11.84512 -11.81433 -11.57576 -11.51941 -11.39540 -11.32073 -11.17243 -11.02419 -10.84114 -10.76547 -10.70997 -10.62571 -10.25022 -10.23001 -10.13707 -9.70975 -9.46897 -9.14200 -8.54807 -8.06525 -6.02128 -4.00101 0.80399 2.13621 2.47578 2.54616 3.27830 3.31483 3.32884 3.38883 4.05411 4.24811 4.37043 4.41438 4.55385 4.65214 4.84629 4.87292 4.99940 5.04356 5.08961 5.14394 5.18918 5.21877 5.24837 5.28417 5.41536 5.50046 5.52139 5.56940 5.62037 5.72206 5.79390 5.82781 5.87628 5.96044 6.08337 6.12883 6.26301 6.33890 6.40165 6.72060 6.81452 6.94142 7.12818 7.41638 7.62879 7.67513 8.56390 9.07840 9.56648 11.11740 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.005349 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.810974 B = 5233.837979 C = 6312.838856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.179 4.179 3 C 0.146 3.854 4 N -0.973 5.973 5 C 0.226 3.774 6 C -0.521 4.521 7 H 0.081 0.919 8 C 0.072 3.928 9 N -0.896 5.896 10 Si 0.866 3.134 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.263 1.263 14 S 2.597 3.403 15 O -0.898 6.898 16 O -0.976 6.976 17 C -0.593 4.593 18 H 0.143 0.857 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.101 4.101 23 C -0.059 4.059 24 H 0.120 0.880 25 C 0.417 3.583 26 O -0.443 6.443 27 O -0.358 6.358 28 C 0.032 3.968 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.021 0.979 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 -20.256 -4.810 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.199 4.199 3 C 0.021 3.979 4 N -0.810 5.810 5 C 0.102 3.898 6 C -0.560 4.560 7 H 0.099 0.901 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.692 3.308 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.188 1.188 14 S 2.687 3.313 15 O -0.887 6.887 16 O -0.967 6.967 17 C -0.699 4.699 18 H 0.161 0.839 19 C -0.147 4.147 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.139 4.139 23 C -0.080 4.080 24 H 0.138 0.862 25 C 0.256 3.744 26 O -0.326 6.326 27 O -0.275 6.275 28 C -0.061 4.061 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.503 -19.237 -4.945 20.900 hybrid contribution -0.537 -0.685 1.521 1.753 sum 5.966 -19.921 -3.424 21.075 Atomic orbital electron populations 1.23824 0.95844 1.01718 1.00799 1.23783 0.96717 0.99671 0.99710 1.20351 0.93127 0.95236 0.89226 1.57249 1.27625 1.79024 1.17132 1.19452 0.95561 0.96863 0.77882 1.21376 1.40171 0.89502 1.04937 0.90093 1.24868 0.95559 0.94752 0.97843 1.69895 1.46843 1.07486 1.29212 0.87020 0.79549 0.80757 0.83434 1.19996 1.20964 1.18815 1.05634 0.74295 0.76690 0.74637 1.93747 1.68678 1.51190 1.75088 1.93494 1.86142 1.87423 1.29622 1.30666 0.99632 1.22914 1.16648 0.83912 1.21665 0.97058 0.95257 1.00706 1.21511 0.97124 0.95667 1.01027 1.21560 0.94222 0.98071 1.01751 1.21459 1.00280 0.91971 1.00214 1.20723 0.87967 0.95747 1.03542 0.86214 1.24028 0.84158 0.87053 0.79127 1.91140 1.82485 1.22291 1.36714 1.86427 1.16220 1.49337 1.75540 1.23329 0.89526 0.93061 1.00219 0.88209 0.88916 0.87031 0.88898 0.89130 0.94602 0.96085 0.92650 0.88591 0.90174 0.91151 0.91394 0.91279 0.91135 0.90928 0.90028 0.91654 0.88110 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.01 0.42 -1.92 16 2 C -0.18 -2.52 8.57 -36.03 -0.31 -2.83 16 3 C 0.15 2.58 5.99 -5.19 -0.03 2.55 16 4 N -0.97 -19.85 2.05 -116.95 -0.24 -20.09 16 5 C 0.23 5.28 4.24 -5.19 -0.02 5.26 16 6 C -0.52 -15.00 9.90 -34.44 -0.34 -15.34 16 7 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 10 Si 0.87 21.11 27.56 -169.99 -4.69 16.43 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.26 -5.91 6.41 56.52 0.36 -5.55 16 14 S 2.60 51.93 4.22 -107.50 -0.45 51.48 16 15 O -0.90 -22.49 14.19 -67.41 -0.96 -23.45 16 16 O -0.98 -19.68 16.29 -57.54 -0.94 -20.61 16 17 C -0.59 -8.74 1.99 -26.73 -0.05 -8.79 16 18 H 0.14 2.12 8.08 -51.92 -0.42 1.70 16 19 C -0.11 -1.27 3.82 -26.73 -0.10 -1.37 16 20 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.10 -0.96 5.14 -26.73 -0.14 -1.10 16 23 C -0.06 -0.76 2.16 -91.77 -0.20 -0.96 16 24 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 25 C 0.42 6.51 6.93 36.00 0.25 6.76 16 26 O -0.44 -8.84 11.98 -26.98 -0.32 -9.17 16 27 O -0.36 -4.72 10.47 -39.27 -0.41 -5.13 16 28 C 0.03 0.35 10.56 101.05 1.07 1.42 16 29 H 0.10 1.29 7.84 -52.49 -0.41 0.87 16 30 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.11 1.36 4.96 -52.49 -0.26 1.10 16 32 H 0.09 1.70 7.76 -51.93 -0.40 1.29 16 33 H 0.09 1.56 6.79 -51.93 -0.35 1.21 16 34 H 0.04 0.80 6.85 -51.93 -0.36 0.44 16 35 H 0.02 0.49 7.62 -51.93 -0.40 0.09 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.10 1.16 5.12 -51.93 -0.27 0.90 16 38 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 45 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -36.98 380.83 -8.88 -45.86 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.51 Total: 2.72 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 0.12 Total: -16.61 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.53 Total: -47.26 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -2.63 Total: -58.35 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.69 Total: 16.43 kcal Atomic # 16 Polarization: 51.93 SS G_CDS: -0.45 Total: 51.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.98 -8.88 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490133886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.619 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds