Wall clock time and date at job start Wed Apr 1 2020 03:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99797 * 2 1 4 4 N 1.46501 * 109.46827 * 125.00538 * 3 2 1 5 5 C 1.46498 * 120.00269 * 275.00212 * 4 3 2 6 6 C 1.50707 * 109.47081 * 275.61461 * 5 4 3 7 7 H 1.08000 * 119.99584 * 355.38902 * 6 5 4 8 8 C 1.37878 * 120.00118 * 175.38176 * 6 5 4 9 9 N 1.31515 * 119.99981 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00115 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47421 * 89.99368 * 10 8 6 12 12 H 1.48494 * 109.46983 * 209.99915 * 10 8 6 13 13 H 1.48508 * 109.47034 * 329.99846 * 10 8 6 14 14 S 1.65602 * 119.99975 * 94.99563 * 4 3 2 15 15 O 1.42109 * 104.27410 * 135.07076 * 14 4 3 16 16 O 1.42098 * 104.27822 * 7.21288 * 14 4 3 17 17 C 1.81394 * 104.45280 * 251.13769 * 14 4 3 18 18 H 1.09004 * 109.47643 * 292.35109 * 17 14 4 19 19 C 1.53001 * 109.46965 * 52.34822 * 17 14 4 20 20 C 1.53001 * 109.47187 * 179.97438 * 19 17 14 21 21 C 1.53002 * 109.46935 * 299.99786 * 20 19 17 22 22 C 1.52997 * 109.47238 * 60.00354 * 21 20 19 23 23 C 1.52998 * 109.47047 * 300.00018 * 22 21 20 24 24 H 1.09004 * 109.47166 * 300.00126 * 23 22 21 25 25 C 1.50695 * 109.47471 * 179.97438 * 23 22 21 26 26 O 1.20821 * 120.00671 * 239.99582 * 25 23 22 27 27 O 1.34235 * 119.99741 * 59.99880 * 25 23 22 28 28 C 1.45207 * 116.99901 * 180.02562 * 27 25 23 29 29 H 1.08001 * 119.99909 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00168 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99909 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47384 * 5.00745 * 3 2 1 33 33 H 1.09001 * 109.47319 * 244.99923 * 3 2 1 34 34 H 1.09001 * 109.47186 * 35.61191 * 5 4 3 35 35 H 1.08997 * 109.47913 * 155.61644 * 5 4 3 36 36 H 0.96996 * 120.00076 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.47203 * 300.00226 * 19 17 14 38 38 H 1.09003 * 109.47430 * 59.99889 * 19 17 14 39 39 H 1.09005 * 109.46806 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.47017 * 60.00212 * 20 19 17 41 41 H 1.08993 * 109.47151 * 299.99798 * 21 20 19 42 42 H 1.09005 * 109.46684 * 179.97438 * 21 20 19 43 43 H 1.09003 * 109.47074 * 59.99331 * 22 21 20 44 44 H 1.08996 * 109.47433 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47173 * 59.99514 * 28 27 25 46 46 H 1.08996 * 109.46884 * 179.97438 * 28 27 25 47 47 H 1.09003 * 109.46530 * 299.99810 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5287 1.7618 2.4523 6 6 2.5851 3.2653 2.5398 7 1 3.0020 3.8383 1.7248 8 6 2.1043 3.9092 3.6602 9 7 2.1531 5.2212 3.7364 10 14 1.3837 2.9180 5.0701 11 1 2.4596 2.5738 6.0340 12 1 0.3412 3.7213 5.7578 13 1 0.7774 1.6706 4.5391 14 16 4.5714 0.8757 0.9171 15 8 5.3201 1.8733 1.5982 16 8 4.6968 0.6965 -0.4869 17 6 4.7030 -0.7164 1.7764 18 1 4.5918 -0.5605 2.8495 19 6 3.6019 -1.6559 1.2808 20 6 3.7133 -2.9991 2.0050 21 6 5.0815 -3.6210 1.7186 22 6 6.1827 -2.6815 2.2142 23 6 6.0712 -1.3384 1.4900 24 1 6.1821 -1.4939 0.4169 25 6 7.1554 -0.4127 1.9786 26 8 6.8636 0.6365 2.5018 27 8 8.4454 -0.7539 1.8325 28 6 9.4359 0.1858 2.3269 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9314 34 1 1.5022 1.4274 2.6027 35 1 3.1682 1.3290 3.2215 36 1 1.8152 5.6742 4.5247 37 1 2.6272 -1.2127 1.4843 38 1 3.7130 -1.8119 0.2077 39 1 2.9285 -3.6683 1.6522 40 1 3.6023 -2.8435 3.0781 41 1 5.1924 -3.7766 0.6455 42 1 5.1610 -4.5777 2.2349 43 1 6.0717 -2.5259 3.2874 44 1 7.1574 -3.1247 2.0106 45 1 9.2920 0.3359 3.3969 46 1 10.4349 -0.2113 2.1472 47 1 9.3241 1.1379 1.8081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490133886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:17 Heat of formation + Delta-G solvation = -152.504930 kcal Electronic energy + Delta-G solvation = -31162.002858 eV Core-core repulsion = 27051.172553 eV Total energy + Delta-G solvation = -4110.830306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95907 -39.34331 -38.25720 -37.93967 -37.54893 -36.78701 -34.96241 -33.64163 -32.63002 -32.12456 -29.90303 -28.72041 -26.57171 -25.14973 -24.16000 -23.78646 -22.13226 -21.07497 -20.87079 -19.60362 -19.06631 -18.77411 -18.53164 -18.15573 -17.58273 -17.28675 -17.14662 -16.27211 -15.98563 -15.55068 -15.39731 -15.14327 -14.97493 -14.68104 -14.55670 -14.49081 -14.32750 -13.89118 -13.76146 -13.65142 -13.32091 -13.21618 -13.08284 -13.02244 -12.93000 -12.76015 -12.54171 -12.46174 -12.29494 -12.19009 -11.95349 -11.91214 -11.79157 -11.76380 -11.67474 -11.46190 -11.19589 -10.85578 -10.78427 -10.23986 -9.72344 -8.27826 -6.32966 -0.70331 0.94880 1.32300 1.36055 1.38791 1.47044 1.50424 1.89831 2.34474 2.79602 3.02710 3.05672 3.21769 3.54425 3.67602 3.79307 3.88845 4.02206 4.11830 4.18010 4.21281 4.25259 4.26802 4.32023 4.33461 4.42818 4.63769 4.67358 4.68726 4.79823 4.86492 4.90758 4.96671 5.10148 5.14085 5.17307 5.21342 5.29507 5.31071 5.33598 5.48819 5.52089 5.65198 5.77122 6.01704 6.34058 6.50986 6.70922 7.28480 8.90682 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.005349 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.810974 B = 5233.837979 C = 6312.838856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.192 4.192 3 C 0.139 3.861 4 N -0.981 5.981 5 C 0.237 3.763 6 C -0.533 4.533 7 H 0.020 0.980 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.942 3.058 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.221 1.221 14 S 2.578 3.422 15 O -0.968 6.968 16 O -0.991 6.991 17 C -0.557 4.557 18 H 0.143 0.857 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.096 4.096 23 C -0.064 4.064 24 H 0.138 0.862 25 C 0.412 3.588 26 O -0.496 6.496 27 O -0.350 6.350 28 C 0.024 3.976 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.145 0.855 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -26.154 -4.029 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.211 4.211 3 C 0.014 3.986 4 N -0.818 5.818 5 C 0.113 3.887 6 C -0.573 4.573 7 H 0.038 0.962 8 C -0.195 4.195 9 N -0.593 5.593 10 Si 0.763 3.237 11 H -0.196 1.196 12 H -0.204 1.204 13 H -0.144 1.144 14 S 2.677 3.323 15 O -0.958 6.958 16 O -0.982 6.982 17 C -0.669 4.669 18 H 0.161 0.839 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.134 4.134 23 C -0.084 4.084 24 H 0.156 0.844 25 C 0.254 3.746 26 O -0.383 6.383 27 O -0.266 6.266 28 C -0.069 4.069 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.163 0.837 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.389 -25.099 -4.249 26.020 hybrid contribution -0.056 1.202 1.156 1.669 sum 5.333 -23.897 -3.092 24.679 Atomic orbital electron populations 1.24080 0.95314 1.02986 0.97954 1.23608 0.97068 0.98280 1.02168 1.20450 0.92676 0.97305 0.88124 1.57109 1.27879 1.80147 1.16618 1.19182 0.96863 0.92940 0.79746 1.21681 1.39517 0.92597 1.03467 0.96164 1.26001 0.96030 0.96009 1.01431 1.70096 1.48637 1.10062 1.30546 0.85813 0.78814 0.80403 0.78640 1.19568 1.20371 1.14355 1.05812 0.73507 0.78450 0.74578 1.93675 1.70124 1.56013 1.75948 1.93456 1.86050 1.88154 1.30505 1.30277 1.02725 1.18666 1.15268 0.83893 1.21887 0.95289 0.96047 1.01993 1.21558 0.98777 0.93988 1.00672 1.21620 0.92499 0.98322 1.02915 1.21560 1.02387 0.89825 0.99655 1.21028 0.85510 0.96789 1.05093 0.84447 1.24733 0.85376 0.86603 0.77925 1.91145 1.83235 1.24520 1.39373 1.86428 1.15630 1.49432 1.75102 1.23623 0.90915 0.92573 0.99833 0.89099 0.85408 0.84511 0.90960 0.89897 0.92251 0.95317 0.92492 0.88691 0.88810 0.88495 0.91419 0.89988 0.88606 0.91080 0.88079 0.91891 0.83696 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 14.32 67.77 0.97 -2.70 16 2 C -0.19 -4.99 8.57 25.64 0.22 -4.77 16 3 C 0.14 5.06 5.99 85.63 0.51 5.57 16 4 N -0.98 -41.28 2.05 -523.91 -1.07 -42.35 16 5 C 0.24 11.26 4.24 85.64 0.36 11.62 16 6 C -0.53 -32.59 9.90 25.60 0.25 -32.34 16 7 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 8 C 0.00 0.13 5.47 84.65 0.46 0.59 16 9 N -0.95 -62.77 13.96 21.45 0.30 -62.47 16 10 Si 0.94 43.57 27.56 68.60 1.89 45.46 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.22 -8.67 6.41 99.48 0.64 -8.04 16 14 S 2.58 107.11 4.22 -56.49 -0.24 106.87 16 15 O -0.97 -52.43 14.19 -118.21 -1.68 -54.11 16 16 O -0.99 -41.37 16.29 -127.65 -2.08 -43.45 16 17 C -0.56 -15.56 1.99 30.60 0.06 -15.50 16 18 H 0.14 4.08 8.08 -2.39 -0.02 4.06 16 19 C -0.11 -2.23 3.82 30.60 0.12 -2.11 16 20 C -0.11 -1.40 5.92 30.60 0.18 -1.22 16 21 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 22 C -0.10 -1.43 5.14 30.59 0.16 -1.27 16 23 C -0.06 -1.51 2.16 -11.54 -0.02 -1.53 16 24 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 25 C 0.41 12.84 6.93 71.23 0.49 13.33 16 26 O -0.50 -20.77 11.98 29.85 0.36 -20.42 16 27 O -0.35 -8.89 10.47 -51.46 -0.54 -9.43 16 28 C 0.02 0.51 10.56 113.37 1.20 1.71 16 29 H 0.09 2.18 7.84 -2.91 -0.02 2.16 16 30 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.14 2.83 4.96 -2.91 -0.01 2.82 16 32 H 0.07 2.82 7.76 -2.39 -0.02 2.80 16 33 H 0.08 3.04 6.79 -2.39 -0.02 3.02 16 34 H 0.06 2.54 6.85 -2.39 -0.02 2.52 16 35 H 0.03 1.33 7.62 -2.39 -0.02 1.31 16 36 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 37 H 0.09 1.93 5.12 -2.39 -0.01 1.92 16 38 H 0.09 1.60 7.75 -2.39 -0.02 1.59 16 39 H 0.10 0.80 8.14 -2.38 -0.02 0.79 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 45 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 46 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 Total: -1.00 -90.63 380.83 2.97 -87.66 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.88 Total: 21.84 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 5.14 Total: -29.61 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -0.78 Total: -104.82 kcal Atomic # 8 Polarization: -123.47 SS G_CDS: -3.94 Total: -127.40 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.89 Total: 45.46 kcal Atomic # 16 Polarization: 107.11 SS G_CDS: -0.24 Total: 106.87 kcal Total: -90.63 2.97 -87.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490133886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.845 kcal (2) G-P(sol) polarization free energy of solvation -90.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds