Wall clock time and date at job start Wed Apr 1 2020 03:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46809 * 205.20384 * 3 2 1 5 5 C 1.36745 * 119.99973 * 265.13071 * 4 3 2 6 6 H 1.07994 * 119.99975 * 144.76824 * 5 4 3 7 7 C 1.39098 * 119.99969 * 324.76634 * 5 4 3 8 8 N 1.31339 * 119.99777 * 157.23461 * 7 5 4 9 9 Si 1.86800 * 120.00041 * 337.23678 * 7 5 4 10 10 H 1.48505 * 109.47179 * 92.01200 * 9 7 5 11 11 H 1.48494 * 109.47203 * 212.01399 * 9 7 5 12 12 H 1.48506 * 109.47164 * 332.01194 * 9 7 5 13 13 C 1.34775 * 119.99726 * 85.13605 * 4 3 2 14 14 O 1.21788 * 119.99576 * 180.02562 * 13 4 3 15 15 C 1.41790 * 120.00568 * 359.97438 * 13 4 3 16 16 C 1.35147 * 120.00353 * 174.47118 * 15 13 4 17 17 C 1.46937 * 120.00021 * 348.54017 * 16 15 13 18 18 C 1.39981 * 120.08299 * 310.87877 * 17 16 15 19 19 C 1.38169 * 119.91770 * 180.29619 * 18 17 16 20 20 O 1.35998 * 119.96194 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99612 * 359.97438 * 20 19 18 22 22 C 1.39284 * 120.08551 * 359.97438 * 19 18 17 23 23 O 1.35913 * 119.91832 * 179.97438 * 22 19 18 24 24 C 1.42908 * 117.00018 * 270.01990 * 23 22 19 25 25 C 1.39278 * 120.16341 * 0.02562 * 22 19 18 26 26 O 1.35997 * 119.95798 * 180.02562 * 25 22 19 27 27 C 1.42904 * 116.99841 * 180.02562 * 26 25 22 28 28 C 1.38175 * 120.08689 * 0.02562 * 25 22 19 29 29 H 4.40640 * 5.51513 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47623 * 85.20498 * 3 2 1 31 31 H 1.08998 * 109.47287 * 325.20110 * 3 2 1 32 32 H 0.97002 * 119.99920 * 180.02562 * 8 7 5 33 33 H 1.08002 * 119.99868 * 354.47628 * 15 13 4 34 34 H 1.08002 * 120.00025 * 168.53731 * 16 15 13 35 35 H 1.08004 * 120.04038 * 0.25407 * 18 17 16 36 36 H 1.08999 * 109.47444 * 299.99964 * 21 20 19 37 37 H 1.09000 * 109.47316 * 60.00516 * 21 20 19 38 38 H 1.09000 * 109.47125 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.46850 * 300.00360 * 24 23 22 40 40 H 1.08994 * 109.46648 * 59.99974 * 24 23 22 41 41 H 1.09000 * 109.47065 * 180.02562 * 24 23 22 42 42 H 1.08991 * 109.47721 * 59.99971 * 27 26 25 43 43 H 1.09004 * 109.47085 * 179.97438 * 27 26 25 44 44 H 1.09002 * 109.47082 * 299.99207 * 27 26 25 45 45 H 1.07998 * 120.04752 * 180.02562 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2507 0.5882 5 6 3.4559 2.3063 -0.2192 6 1 3.2659 3.3166 0.1114 7 6 4.0283 2.0786 -1.4663 8 7 3.9338 2.9890 -2.4083 9 14 4.9314 0.4781 -1.8014 10 1 3.9866 -0.5121 -2.3778 11 1 6.0366 0.7251 -2.7618 12 1 5.4888 -0.0512 -0.5307 13 6 3.2649 1.3602 1.9251 14 8 3.6699 2.3994 2.4141 15 6 2.9305 0.2658 2.7624 16 6 3.1666 0.3347 4.0913 17 6 3.9909 1.4226 4.6355 18 6 5.2312 1.7193 4.0583 19 6 6.0062 2.7390 4.5767 20 8 7.2116 3.0277 4.0170 21 6 7.6129 2.2363 2.8968 22 6 5.5546 3.4716 5.6719 23 8 6.3200 4.4735 6.1793 24 6 7.2487 4.1234 7.2076 25 6 4.3212 3.1793 6.2489 26 8 3.8841 3.8976 7.3177 27 6 2.6102 3.5438 7.8600 28 6 3.5409 2.1604 5.7367 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0094 -0.0851 -1.0240 31 1 3.0097 -0.8430 0.5865 32 1 4.3327 2.8301 -3.2781 33 1 2.4870 -0.6229 2.3381 34 1 2.7495 -0.4098 4.7532 35 1 5.5821 1.1515 3.2093 36 1 7.6712 1.1892 3.1939 37 1 6.8835 2.3462 2.0943 38 1 8.5903 2.5696 2.5480 39 1 6.7090 3.7074 8.0583 40 1 7.9513 3.3828 6.8256 41 1 7.7937 5.0130 7.5232 42 1 2.6327 2.5065 8.1938 43 1 2.3826 4.1924 8.7060 44 1 1.8436 3.6626 7.0942 45 1 2.5844 1.9345 6.1844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490994417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:43 Heat of formation + Delta-G solvation = 1.309898 kcal Electronic energy + Delta-G solvation = -31005.602199 eV Core-core repulsion = 26765.997853 eV Total energy + Delta-G solvation = -4239.604346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48876 -39.24711 -38.67920 -37.45587 -36.56087 -35.17627 -33.04063 -32.44699 -31.70340 -29.48421 -29.27697 -27.58474 -26.92292 -26.90256 -26.46275 -25.18581 -22.88249 -21.61845 -21.06336 -18.87330 -18.61782 -17.71528 -17.17857 -16.80132 -16.76525 -16.45802 -16.14382 -15.92687 -15.64496 -15.25208 -14.79272 -14.54825 -14.48635 -14.31349 -13.98131 -13.67338 -13.34540 -13.24009 -12.85558 -12.79782 -12.58190 -12.28039 -12.22110 -11.84661 -11.82823 -11.58915 -11.34226 -11.25676 -11.06395 -10.89246 -10.73117 -10.44160 -10.34583 -9.85674 -9.67462 -9.64277 -9.26963 -9.02771 -8.64315 -8.03777 -7.71260 -7.38705 -6.55994 -4.03557 1.02065 1.81552 2.06548 2.87865 3.06563 3.08977 3.09651 3.13608 3.27805 3.86378 3.92446 3.97717 4.16378 4.22484 4.52669 4.74584 4.90675 5.06505 5.11185 5.20024 5.27555 5.33208 5.39238 5.42826 5.51779 5.52824 5.56679 5.58234 5.61825 5.64375 5.71484 5.77711 5.86374 5.91368 5.93911 6.20216 6.31713 6.43548 6.51980 6.62335 6.71853 6.89570 7.31974 7.40027 7.57097 8.02459 8.03713 8.17266 8.37597 8.84735 9.16051 9.66897 10.55501 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.003950 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.032018 B = 7087.562500 C = 8427.487210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C 0.185 3.815 4 N -0.448 5.448 5 C -0.308 4.308 6 H 0.110 0.890 7 C 0.060 3.940 8 N -0.848 5.848 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.475 3.525 14 O -0.543 6.543 15 C -0.174 4.174 16 C -0.074 4.074 17 C 0.037 3.963 18 C -0.152 4.152 19 C 0.143 3.857 20 O -0.307 6.307 21 C 0.025 3.975 22 C 0.026 3.974 23 O -0.312 6.312 24 C 0.036 3.964 25 C 0.135 3.865 26 O -0.309 6.309 27 C 0.028 3.972 28 C -0.221 4.221 29 H 0.214 0.786 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.277 0.723 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 -8.467 14.829 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.180 4.180 3 C 0.062 3.938 4 N -0.168 5.168 5 C -0.435 4.435 6 H 0.128 0.872 7 C -0.148 4.148 8 N -0.483 5.483 9 Si 0.694 3.306 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.183 1.183 13 C 0.268 3.732 14 O -0.425 6.425 15 C -0.195 4.195 16 C -0.095 4.095 17 C 0.036 3.964 18 C -0.171 4.171 19 C 0.097 3.903 20 O -0.220 6.220 21 C -0.070 4.070 22 C -0.020 4.020 23 O -0.228 6.228 24 C -0.059 4.059 25 C 0.089 3.911 26 O -0.222 6.222 27 C -0.068 4.068 28 C -0.240 4.240 29 H 0.231 0.769 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.376 -7.328 14.925 16.684 hybrid contribution -0.272 -1.446 -0.829 1.689 sum 1.104 -8.774 14.096 16.640 Atomic orbital electron populations 1.24744 0.95679 1.00903 1.01846 1.23691 0.94821 0.99842 0.99600 1.19072 0.84244 0.89518 1.00933 1.43764 1.55456 1.12132 1.05448 1.19111 1.39178 0.88253 0.97009 0.87211 1.25398 0.96461 0.97708 0.95200 1.69735 1.39930 1.35519 1.03091 0.87153 0.80522 0.83620 0.79320 1.19806 1.20787 1.18318 1.17011 0.84209 0.89445 0.82552 1.90839 1.48425 1.30567 1.72706 1.22508 1.02773 0.99519 0.94668 1.22099 0.96305 0.96565 0.94568 1.18326 0.92479 0.93616 0.91965 1.20965 0.95539 0.99913 1.00670 1.18687 0.85748 0.92996 0.92870 1.86062 1.32431 1.57803 1.45715 1.23107 1.01346 0.94655 0.87916 1.16945 0.91151 0.96801 0.97054 1.86130 1.51892 1.30724 1.54096 1.22914 0.91844 1.01237 0.89858 1.18629 0.93132 0.91374 0.87951 1.86100 1.36096 1.56400 1.43594 1.23031 0.83882 1.01102 0.98747 1.20950 1.01380 1.00302 1.01408 0.76932 0.88468 0.89379 0.91247 0.85996 0.85133 0.85387 0.93190 0.91308 0.88492 0.94186 0.94055 0.89573 0.92896 0.88548 0.92544 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.50 19.25 29.55 0.57 -2.93 16 2 C -0.18 -3.37 13.27 -37.12 -0.49 -3.86 16 3 C 0.18 3.66 4.18 -6.83 -0.03 3.63 16 4 N -0.45 -10.53 2.18 -121.13 -0.26 -10.80 16 5 C -0.31 -8.46 9.40 -15.04 -0.14 -8.61 16 6 H 0.11 3.46 7.86 -52.49 -0.41 3.05 16 7 C 0.06 1.59 5.29 -17.44 -0.09 1.49 16 8 N -0.85 -23.75 13.95 55.50 0.77 -22.97 16 9 Si 0.87 19.01 25.10 -169.99 -4.27 14.75 16 10 H -0.27 -5.52 6.51 56.52 0.37 -5.15 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.48 10.69 6.65 -14.90 -0.10 10.59 16 14 O -0.54 -13.91 12.16 5.11 0.06 -13.85 16 15 C -0.17 -3.01 8.83 -39.32 -0.35 -3.36 16 16 C -0.07 -1.13 9.76 -37.16 -0.36 -1.50 16 17 C 0.04 0.64 4.26 -105.07 -0.45 0.20 16 18 C -0.15 -2.88 5.81 -38.95 -0.23 -3.10 16 19 C 0.14 2.78 6.69 -39.22 -0.26 2.52 16 20 O -0.31 -5.72 10.27 -34.49 -0.35 -6.08 16 21 C 0.02 0.38 9.81 101.05 0.99 1.37 16 22 C 0.03 0.49 5.76 -38.81 -0.22 0.27 16 23 O -0.31 -5.81 9.96 -44.87 -0.45 -6.26 16 24 C 0.04 0.50 11.13 101.05 1.12 1.62 16 25 C 0.13 2.36 6.69 -39.22 -0.26 2.10 16 26 O -0.31 -4.82 10.27 -34.49 -0.35 -5.17 16 27 C 0.03 0.29 9.81 101.05 0.99 1.28 16 28 C -0.22 -3.62 8.77 -38.95 -0.34 -3.96 16 29 H 0.21 2.56 7.80 -54.08 -0.42 2.13 16 30 H 0.10 2.02 3.14 -51.93 -0.16 1.86 16 31 H 0.09 1.41 6.46 -51.93 -0.34 1.08 16 32 H 0.28 7.13 8.31 -40.82 -0.34 6.80 16 33 H 0.12 1.77 6.11 -52.49 -0.32 1.45 16 34 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.13 2.43 5.74 -52.48 -0.30 2.13 16 36 H 0.05 0.66 7.66 -51.93 -0.40 0.27 16 37 H 0.07 1.23 7.66 -51.93 -0.40 0.84 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 45 H 0.13 1.72 6.28 -52.49 -0.33 1.39 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -34.37 381.06 -4.34 -38.70 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.58 Total: 8.17 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 0.35 Total: -2.24 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.51 Total: -33.77 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.09 Total: -31.36 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.27 Total: 14.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.37 -4.34 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.014 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds