Wall clock time and date at job start Wed Apr 1 2020 03:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46809 * 205.20384 * 3 2 1 5 5 C 1.36745 * 119.99973 * 265.13071 * 4 3 2 6 6 H 1.07994 * 119.99975 * 144.76824 * 5 4 3 7 7 C 1.39098 * 119.99969 * 324.76634 * 5 4 3 8 8 N 1.31339 * 119.99777 * 157.23461 * 7 5 4 9 9 Si 1.86800 * 120.00041 * 337.23678 * 7 5 4 10 10 H 1.48505 * 109.47179 * 92.01200 * 9 7 5 11 11 H 1.48494 * 109.47203 * 212.01399 * 9 7 5 12 12 H 1.48506 * 109.47164 * 332.01194 * 9 7 5 13 13 C 1.34775 * 119.99726 * 85.13605 * 4 3 2 14 14 O 1.21788 * 119.99576 * 180.02562 * 13 4 3 15 15 C 1.41790 * 120.00568 * 359.97438 * 13 4 3 16 16 C 1.35147 * 120.00353 * 174.47118 * 15 13 4 17 17 C 1.46937 * 120.00021 * 348.54017 * 16 15 13 18 18 C 1.39981 * 120.08299 * 310.87877 * 17 16 15 19 19 C 1.38169 * 119.91770 * 180.29619 * 18 17 16 20 20 O 1.35998 * 119.96194 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99612 * 359.97438 * 20 19 18 22 22 C 1.39284 * 120.08551 * 359.97438 * 19 18 17 23 23 O 1.35913 * 119.91832 * 179.97438 * 22 19 18 24 24 C 1.42908 * 117.00018 * 270.01990 * 23 22 19 25 25 C 1.39278 * 120.16341 * 0.02562 * 22 19 18 26 26 O 1.35997 * 119.95798 * 180.02562 * 25 22 19 27 27 C 1.42904 * 116.99841 * 180.02562 * 26 25 22 28 28 C 1.38175 * 120.08689 * 0.02562 * 25 22 19 29 29 H 4.40640 * 5.51513 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47623 * 85.20498 * 3 2 1 31 31 H 1.08998 * 109.47287 * 325.20110 * 3 2 1 32 32 H 0.97002 * 119.99920 * 180.02562 * 8 7 5 33 33 H 1.08002 * 119.99868 * 354.47628 * 15 13 4 34 34 H 1.08002 * 120.00025 * 168.53731 * 16 15 13 35 35 H 1.08004 * 120.04038 * 0.25407 * 18 17 16 36 36 H 1.08999 * 109.47444 * 299.99964 * 21 20 19 37 37 H 1.09000 * 109.47316 * 60.00516 * 21 20 19 38 38 H 1.09000 * 109.47125 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.46850 * 300.00360 * 24 23 22 40 40 H 1.08994 * 109.46648 * 59.99974 * 24 23 22 41 41 H 1.09000 * 109.47065 * 180.02562 * 24 23 22 42 42 H 1.08991 * 109.47721 * 59.99971 * 27 26 25 43 43 H 1.09004 * 109.47085 * 179.97438 * 27 26 25 44 44 H 1.09002 * 109.47082 * 299.99207 * 27 26 25 45 45 H 1.07998 * 120.04752 * 180.02562 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2507 0.5882 5 6 3.4559 2.3063 -0.2192 6 1 3.2659 3.3166 0.1114 7 6 4.0283 2.0786 -1.4663 8 7 3.9338 2.9890 -2.4083 9 14 4.9314 0.4781 -1.8014 10 1 3.9866 -0.5121 -2.3778 11 1 6.0366 0.7251 -2.7618 12 1 5.4888 -0.0512 -0.5307 13 6 3.2649 1.3602 1.9251 14 8 3.6699 2.3994 2.4141 15 6 2.9305 0.2658 2.7624 16 6 3.1666 0.3347 4.0913 17 6 3.9909 1.4226 4.6355 18 6 5.2312 1.7193 4.0583 19 6 6.0062 2.7390 4.5767 20 8 7.2116 3.0277 4.0170 21 6 7.6129 2.2363 2.8968 22 6 5.5546 3.4716 5.6719 23 8 6.3200 4.4735 6.1793 24 6 7.2487 4.1234 7.2076 25 6 4.3212 3.1793 6.2489 26 8 3.8841 3.8976 7.3177 27 6 2.6102 3.5438 7.8600 28 6 3.5409 2.1604 5.7367 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0094 -0.0851 -1.0240 31 1 3.0097 -0.8430 0.5865 32 1 4.3327 2.8301 -3.2781 33 1 2.4870 -0.6229 2.3381 34 1 2.7495 -0.4098 4.7532 35 1 5.5821 1.1515 3.2093 36 1 7.6712 1.1892 3.1939 37 1 6.8835 2.3462 2.0943 38 1 8.5903 2.5696 2.5480 39 1 6.7090 3.7074 8.0583 40 1 7.9513 3.3828 6.8256 41 1 7.7937 5.0130 7.5232 42 1 2.6327 2.5065 8.1938 43 1 2.3826 4.1924 8.7060 44 1 1.8436 3.6626 7.0942 45 1 2.5844 1.9345 6.1844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490994417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:42 Heat of formation + Delta-G solvation = -22.138859 kcal Electronic energy + Delta-G solvation = -31006.619013 eV Core-core repulsion = 26765.997853 eV Total energy + Delta-G solvation = -4240.621160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82737 -40.86857 -39.94550 -38.76548 -37.98622 -36.78859 -34.69750 -33.95777 -33.31357 -30.82397 -30.56295 -28.72652 -28.49398 -28.02512 -27.85644 -26.72414 -24.36202 -22.91864 -22.53296 -20.30168 -20.14946 -19.22961 -18.64944 -18.32100 -18.08982 -17.92329 -17.45773 -17.25775 -17.17602 -16.44846 -16.17340 -15.92989 -15.80709 -15.54970 -15.47931 -15.11916 -14.95660 -14.64719 -14.41960 -14.20949 -14.01229 -13.85673 -13.44050 -13.14025 -13.06348 -12.85558 -12.73858 -12.60547 -12.48609 -12.40783 -12.03434 -11.96555 -11.72157 -11.37474 -11.20891 -10.96369 -10.94583 -10.39921 -10.28842 -9.89278 -9.09896 -8.79680 -8.55616 -6.11868 -0.31954 0.45524 0.72513 1.15686 1.30427 1.40653 1.73113 1.89962 1.92750 2.13677 2.45040 2.59511 2.72887 2.89709 2.96451 3.05438 3.60176 3.66515 4.01498 4.06233 4.09976 4.17326 4.24178 4.26001 4.29828 4.34012 4.42076 4.43410 4.46717 4.49647 4.51138 4.59521 4.63066 4.73538 4.75711 4.90197 5.07482 5.12435 5.18135 5.28440 5.43069 5.47246 5.64035 6.02503 6.08222 6.31030 6.52255 6.72648 6.73356 6.92740 7.25524 7.88186 8.61968 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.003950 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.032018 B = 7087.562500 C = 8427.487210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.235 4.235 3 C 0.185 3.815 4 N -0.465 5.465 5 C -0.328 4.328 6 H 0.040 0.960 7 C 0.011 3.989 8 N -0.906 5.906 9 Si 0.939 3.061 10 H -0.238 1.238 11 H -0.284 1.284 12 H -0.244 1.244 13 C 0.477 3.523 14 O -0.587 6.587 15 C -0.199 4.199 16 C -0.030 4.030 17 C 0.014 3.986 18 C -0.164 4.164 19 C 0.119 3.881 20 O -0.324 6.324 21 C 0.026 3.974 22 C 0.004 3.996 23 O -0.340 6.340 24 C 0.034 3.966 25 C 0.130 3.870 26 O -0.324 6.324 27 C 0.016 3.984 28 C -0.215 4.215 29 H 0.254 0.746 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.281 0.719 33 H 0.159 0.841 34 H 0.190 0.810 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.125 0.875 39 H 0.050 0.950 40 H 0.042 0.958 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.056 0.944 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -12.287 17.253 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.236 4.236 3 C 0.063 3.937 4 N -0.185 5.185 5 C -0.456 4.456 6 H 0.058 0.942 7 C -0.191 4.191 8 N -0.543 5.543 9 Si 0.761 3.239 10 H -0.164 1.164 11 H -0.211 1.211 12 H -0.168 1.168 13 C 0.271 3.729 14 O -0.472 6.472 15 C -0.219 4.219 16 C -0.050 4.050 17 C 0.014 3.986 18 C -0.183 4.183 19 C 0.073 3.927 20 O -0.238 6.238 21 C -0.069 4.069 22 C -0.041 4.041 23 O -0.257 6.257 24 C -0.060 4.060 25 C 0.084 3.916 26 O -0.238 6.238 27 C -0.078 4.078 28 C -0.233 4.233 29 H 0.270 0.730 30 H 0.102 0.898 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.176 0.824 34 H 0.207 0.793 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.141 0.859 44 H 0.074 0.926 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.024 -11.177 17.373 20.658 hybrid contribution 0.060 -0.092 -1.270 1.275 sum 0.036 -11.269 16.103 19.655 Atomic orbital electron populations 1.25719 0.96568 0.98157 0.99148 1.23813 0.95347 1.02322 1.02107 1.19138 0.85287 0.88607 1.00627 1.43758 1.56800 1.12497 1.05493 1.18540 1.41530 0.87153 0.98358 0.94200 1.26197 0.96409 1.02271 0.94252 1.69862 1.41843 1.38695 1.03886 0.86022 0.79103 0.79061 0.79721 1.16358 1.21063 1.16765 1.17949 0.82022 0.90196 0.82683 1.90823 1.49816 1.32888 1.73650 1.22427 1.05742 0.99153 0.94625 1.22695 0.92446 0.95488 0.94415 1.18760 0.92468 0.94906 0.92463 1.20999 0.96669 1.00086 1.00558 1.18972 0.86322 0.93798 0.93600 1.86021 1.32524 1.58823 1.46409 1.23229 1.01444 0.95986 0.86210 1.17312 0.92291 0.96962 0.97560 1.86049 1.52761 1.31432 1.55417 1.23116 0.91302 1.02595 0.89012 1.18753 0.92714 0.91651 0.88483 1.86090 1.38364 1.56481 1.42847 1.23416 0.81650 1.03349 0.99370 1.21290 1.02245 0.99222 1.00565 0.72972 0.89822 0.85346 0.90941 0.82386 0.79303 0.86338 0.90965 0.94836 0.85657 0.93128 0.93911 0.87264 0.90553 0.85902 0.92550 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.28 19.25 74.32 1.43 -3.85 16 2 C -0.23 -8.41 13.27 31.12 0.41 -7.99 16 3 C 0.18 7.04 4.18 84.57 0.35 7.39 16 4 N -0.47 -22.33 2.18 -655.34 -1.43 -23.77 16 5 C -0.33 -19.30 9.40 84.13 0.79 -18.51 16 6 H 0.04 2.82 7.86 -2.91 -0.02 2.79 16 7 C 0.01 0.63 5.29 84.97 0.45 1.08 16 8 N -0.91 -54.12 13.95 21.69 0.30 -53.82 16 9 Si 0.94 39.95 25.10 68.60 1.72 41.67 16 10 H -0.24 -8.86 6.51 99.48 0.65 -8.22 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.24 -9.69 7.11 99.48 0.71 -8.98 16 13 C 0.48 21.67 6.65 85.12 0.57 22.24 16 14 O -0.59 -31.50 12.16 -4.63 -0.06 -31.56 16 15 C -0.20 -6.31 8.83 22.44 0.20 -6.11 16 16 C -0.03 -0.80 9.76 23.84 0.23 -0.57 16 17 C 0.01 0.48 4.26 -20.15 -0.09 0.40 16 18 C -0.16 -6.30 5.81 22.68 0.13 -6.17 16 19 C 0.12 4.80 6.69 22.51 0.15 4.95 16 20 O -0.32 -12.67 10.27 -79.42 -0.82 -13.48 16 21 C 0.03 0.83 9.81 113.37 1.11 1.94 16 22 C 0.00 0.15 5.76 22.77 0.13 0.28 16 23 O -0.34 -12.93 9.96 -68.28 -0.68 -13.61 16 24 C 0.03 0.91 11.13 113.37 1.26 2.18 16 25 C 0.13 4.46 6.69 22.50 0.15 4.61 16 26 O -0.32 -9.65 10.27 -79.41 -0.82 -10.46 16 27 C 0.02 0.29 9.81 113.37 1.11 1.41 16 28 C -0.21 -6.53 8.77 22.68 0.20 -6.33 16 29 H 0.25 4.89 7.80 -4.41 -0.03 4.86 16 30 H 0.08 3.35 3.14 -2.39 -0.01 3.35 16 31 H 0.13 3.68 6.46 -2.39 -0.02 3.66 16 32 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.16 3.85 6.11 -2.91 -0.02 3.83 16 34 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.12 4.64 5.74 -2.91 -0.02 4.63 16 36 H 0.07 1.95 7.66 -2.39 -0.02 1.93 16 37 H 0.03 1.30 7.66 -2.39 -0.02 1.28 16 38 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.08 1.04 7.66 -2.39 -0.02 1.02 16 43 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.06 1.03 7.66 -2.39 -0.02 1.02 16 45 H 0.16 3.66 6.28 -2.91 -0.02 3.65 16 Total: -1.00 -85.70 381.06 7.79 -77.91 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.96 Total: 30.16 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 8.60 Total: -3.05 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.13 Total: -77.58 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: -2.37 Total: -69.12 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.72 Total: 41.67 kcal Total: -85.70 7.79 -77.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.774 kcal (2) G-P(sol) polarization free energy of solvation -85.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds