Wall clock time and date at job start Wed Apr 1 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 116.99702 * 2 1 4 4 C 1.38123 * 119.89300 * 0.31370 * 3 2 1 5 5 C 1.39963 * 119.87022 * 180.27616 * 4 3 2 6 6 C 1.46932 * 120.11075 * 179.77024 * 5 4 3 7 7 C 1.35148 * 120.00410 * 313.25082 * 6 5 4 8 8 C 1.41797 * 119.99716 * 347.95743 * 7 6 5 9 9 O 1.21781 * 119.99589 * 352.64941 * 8 7 6 10 10 N 1.34772 * 120.00307 * 172.65438 * 8 7 6 11 11 C 1.36744 * 120.00383 * 173.93363 * 10 8 7 12 12 H 1.08004 * 119.99685 * 23.67923 * 11 10 8 13 13 C 1.39087 * 120.00494 * 203.67936 * 11 10 8 14 14 N 1.31343 * 119.99662 * 2.35294 * 13 11 10 15 15 Si 1.86803 * 120.00220 * 182.34959 * 13 11 10 16 16 H 1.48503 * 109.46780 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.46758 * 299.99815 * 15 13 11 18 18 H 1.48495 * 109.46950 * 60.00074 * 15 13 11 19 19 C 1.46502 * 119.99940 * 353.93369 * 10 8 7 20 20 C 1.52996 * 117.49886 * 310.80934 * 19 10 8 21 21 C 1.52994 * 117.49993 * 242.18264 * 19 10 8 22 22 C 1.39935 * 119.77773 * 359.49614 * 5 4 3 23 23 C 1.38316 * 120.03834 * 0.22463 * 22 5 4 24 24 C 1.39177 * 120.02386 * 359.96839 * 23 22 5 25 25 O 1.36093 * 120.71911 * 180.20741 * 24 23 22 26 26 C 1.43155 * 116.72729 * 342.66403 * 25 24 23 27 27 C 1.53472 * 108.23230 * 46.35237 * 26 25 24 28 28 O 1.36153 * 119.22571 * 179.82391 * 23 22 5 29 29 H 1.08990 * 109.47470 * 299.99846 * 1 2 3 30 30 H 1.09000 * 109.47210 * 60.00642 * 1 2 3 31 31 H 1.09007 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.06582 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.99926 * 133.25085 * 6 5 4 34 34 H 1.08001 * 120.00719 * 167.95278 * 7 6 5 35 35 H 0.97006 * 119.99991 * 180.02562 * 14 13 11 36 36 H 1.08998 * 115.54826 * 96.50846 * 19 10 8 37 37 H 1.09003 * 117.50015 * 359.97438 * 20 19 10 38 38 H 1.09004 * 117.50160 * 145.01954 * 20 19 10 39 39 H 1.09004 * 117.49752 * 214.97602 * 21 19 10 40 40 H 1.08998 * 117.50242 * 359.97438 * 21 19 10 41 41 H 1.07997 * 119.98213 * 180.24863 * 22 5 4 42 42 H 1.09001 * 109.71732 * 286.66300 * 26 25 24 43 43 H 1.09008 * 109.71209 * 166.03117 * 26 25 24 44 44 H 1.09006 * 109.70661 * 180.50330 * 27 26 25 45 45 H 1.08992 * 109.71491 * 59.86974 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3687 0.0066 5 6 1.9277 3.6156 0.0007 6 6 1.1302 4.8497 0.0025 7 6 0.0853 4.9804 -0.8446 8 6 -0.0904 4.0521 -1.9020 9 8 0.7682 3.2192 -2.1300 10 7 -1.2076 4.0917 -2.6548 11 6 -1.3234 3.2810 -3.7499 12 1 -0.7448 2.3711 -3.8117 13 6 -2.1861 3.6281 -4.7842 14 7 -2.8548 4.7573 -4.7305 15 14 -2.3936 2.4885 -6.2497 16 1 -3.3611 3.0835 -7.2063 17 1 -1.0827 2.3039 -6.9226 18 1 -2.9013 1.1726 -5.7853 19 6 -2.2981 5.0034 -2.2998 20 6 -2.7769 5.0002 -0.8467 21 6 -3.6496 4.3824 -1.9411 22 6 3.3254 3.6830 -0.0011 23 6 4.0746 2.5203 -0.0018 24 6 3.4389 1.2822 0.0000 25 8 4.1622 0.1294 0.0036 26 6 5.5388 0.2318 -0.3756 27 6 6.1538 1.4258 0.3669 28 8 5.4335 2.6051 -0.0072 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2134 2.3114 0.0121 33 1 1.3791 5.6524 0.6809 34 1 -0.6158 5.7917 -0.7162 35 1 -3.4568 4.9992 -5.4516 36 1 -2.3067 5.9553 -2.8307 37 1 -2.2808 4.3195 -0.1548 38 1 -3.1005 5.9502 -0.4213 39 1 -4.5473 4.9260 -2.2357 40 1 -3.7275 3.2956 -1.9696 41 1 3.8194 4.6433 -0.0015 42 1 5.6131 0.3900 -1.4515 43 1 6.0649 -0.6825 -0.1008 44 1 7.2023 1.5315 0.0882 45 1 6.0726 1.2712 1.4428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491202821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:04 Heat of formation + Delta-G solvation = -37.053428 kcal Electronic energy + Delta-G solvation = -31295.826549 eV Core-core repulsion = 27054.558645 eV Total energy + Delta-G solvation = -4241.267904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97577 -39.35115 -38.72167 -37.13026 -36.62921 -35.74435 -33.47033 -32.47581 -31.18405 -30.39231 -29.48673 -28.01081 -26.87368 -25.53755 -24.53068 -22.80147 -21.77838 -21.48575 -21.30434 -20.29581 -18.74778 -17.95804 -17.32471 -17.12703 -16.86813 -16.20528 -15.82045 -15.48383 -15.23136 -15.02984 -14.73146 -14.58800 -14.33051 -14.19815 -14.05100 -13.69880 -13.43044 -13.03586 -12.82548 -12.81135 -12.52449 -12.15278 -11.77880 -11.57114 -11.35025 -11.19681 -11.14955 -10.91322 -10.83301 -10.80700 -10.52455 -10.50680 -10.40468 -10.26683 -9.84173 -9.45408 -8.95991 -8.74470 -8.38771 -7.85910 -7.47610 -7.15840 -6.38507 -3.90809 1.26325 1.87052 2.30432 3.16854 3.19427 3.23886 3.26040 3.42239 3.66552 4.05532 4.20175 4.38971 4.42469 4.65973 4.81518 4.86407 4.94173 5.12328 5.14408 5.20173 5.27068 5.44835 5.50460 5.55339 5.57998 5.64586 5.74072 5.77133 5.86529 5.92123 5.96620 6.10163 6.18381 6.23946 6.32730 6.49522 6.65448 6.68891 6.79503 6.86533 6.98821 7.09519 7.15765 7.22521 7.45934 7.50018 7.93207 8.06898 8.45613 9.14530 9.34887 9.98399 10.62179 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.003603 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.207163 B = 7770.208385 C = 8372.163273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.128 3.872 4 C -0.121 4.121 5 C 0.016 3.984 6 C -0.091 4.091 7 C -0.158 4.158 8 C 0.458 3.542 9 O -0.576 6.576 10 N -0.407 5.407 11 C -0.297 4.297 12 H 0.101 0.899 13 C 0.037 3.963 14 N -0.867 5.867 15 Si 0.926 3.074 16 H -0.283 1.283 17 H -0.272 1.272 18 H -0.273 1.273 19 C 0.136 3.864 20 C -0.225 4.225 21 C -0.151 4.151 22 C -0.141 4.141 23 C 0.071 3.929 24 C 0.012 3.988 25 O -0.299 6.299 26 C 0.020 3.980 27 C 0.022 3.978 28 O -0.307 6.307 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.269 0.731 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.196 -2.286 11.095 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.082 3.918 4 C -0.140 4.140 5 C 0.015 3.985 6 C -0.113 4.113 7 C -0.179 4.179 8 C 0.251 3.749 9 O -0.462 6.462 10 N -0.124 5.124 11 C -0.425 4.425 12 H 0.118 0.882 13 C -0.168 4.168 14 N -0.505 5.505 15 Si 0.752 3.248 16 H -0.208 1.208 17 H -0.197 1.197 18 H -0.199 1.199 19 C 0.030 3.970 20 C -0.263 4.263 21 C -0.188 4.188 22 C -0.160 4.160 23 C 0.027 3.973 24 C -0.033 4.033 25 O -0.214 6.214 26 C -0.056 4.056 27 C -0.054 4.054 28 O -0.222 6.222 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.147 0.853 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.538 -2.821 10.784 13.457 hybrid contribution -0.489 -0.259 -1.066 1.201 sum 7.049 -3.080 9.718 12.395 Atomic orbital electron populations 1.23036 0.78561 1.03299 1.01832 1.86061 1.21026 1.26153 1.89178 1.17838 0.88332 0.85108 1.00510 1.20899 0.99371 0.90219 1.03490 1.18226 0.91362 0.92757 0.96162 1.21942 0.94998 0.95226 0.99119 1.22552 0.97905 1.01631 0.95801 1.16917 0.83124 0.88179 0.86684 1.90772 1.42595 1.39954 1.72904 1.43252 1.11683 1.33684 1.23777 1.19619 1.24507 1.03988 0.94399 0.88172 1.25368 0.96464 0.96438 0.98543 1.69835 1.26354 1.21271 1.33009 0.85999 0.78361 0.79829 0.80595 1.20843 1.19738 1.19874 1.21265 0.88327 0.95844 0.91522 1.23602 1.06780 1.02540 0.93369 1.22752 0.95296 1.00018 1.00768 1.20232 0.92064 0.95981 1.07676 1.18235 0.82245 0.92351 1.04508 1.17968 0.88688 0.84845 1.11801 1.86334 1.21659 1.28587 1.84841 1.23535 0.81976 1.00123 0.99977 1.23548 0.96852 0.85184 0.99833 1.86301 1.15095 1.35862 1.84960 0.93218 0.91751 0.88742 0.85318 0.85589 0.85647 0.92011 0.86521 0.89642 0.89235 0.89598 0.89706 0.85276 0.90883 0.86682 0.86644 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.31 -5.91 10.24 -35.19 -0.36 -6.27 16 3 C 0.13 2.54 6.69 -39.18 -0.26 2.28 16 4 C -0.12 -2.36 5.78 -38.98 -0.23 -2.59 16 5 C 0.02 0.29 4.32 -105.10 -0.45 -0.16 16 6 C -0.09 -1.53 9.77 -37.16 -0.36 -1.89 16 7 C -0.16 -2.96 7.82 -39.32 -0.31 -3.27 16 8 C 0.46 10.73 6.38 -14.90 -0.10 10.63 16 9 O -0.58 -15.07 12.05 5.12 0.06 -15.01 16 10 N -0.41 -9.89 2.93 -110.90 -0.32 -10.21 16 11 C -0.30 -7.89 9.18 -15.05 -0.14 -8.03 16 12 H 0.10 2.82 7.35 -52.48 -0.39 2.44 16 13 C 0.04 0.93 5.27 -17.45 -0.09 0.84 16 14 N -0.87 -21.65 10.20 55.50 0.57 -21.09 16 15 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C 0.14 2.87 3.33 -67.93 -0.23 2.64 16 20 C -0.22 -3.80 8.11 -26.73 -0.22 -4.01 16 21 C -0.15 -2.90 9.47 -26.73 -0.25 -3.16 16 22 C -0.14 -2.51 9.70 -38.92 -0.38 -2.89 16 23 C 0.07 1.29 6.48 -39.20 -0.25 1.03 16 24 C 0.01 0.23 6.52 -38.79 -0.25 -0.03 16 25 O -0.30 -5.18 10.16 -44.92 -0.46 -5.64 16 26 C 0.02 0.24 7.26 37.40 0.27 0.51 16 27 C 0.02 0.24 7.26 37.40 0.27 0.51 16 28 O -0.31 -4.81 10.41 -33.00 -0.34 -5.16 16 29 H 0.05 0.68 7.64 -51.93 -0.40 0.28 16 30 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 31 H 0.09 1.18 8.14 -51.92 -0.42 0.75 16 32 H 0.13 2.52 5.58 -52.49 -0.29 2.23 16 33 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.13 2.08 5.88 -52.49 -0.31 1.77 16 35 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.12 2.62 7.47 -51.93 -0.39 2.23 16 37 H 0.09 1.44 7.34 -51.93 -0.38 1.06 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.12 0.97 8.14 -51.92 -0.42 0.55 16 44 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -31.83 368.52 -8.23 -40.06 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.91 Total: 8.66 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.98 Total: -6.16 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.24 Total: -31.30 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.10 Total: -32.08 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.83 -8.23 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491202821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.003 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds