Wall clock time and date at job start Wed Apr 1 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 116.99702 * 2 1 4 4 C 1.38123 * 119.89300 * 0.31370 * 3 2 1 5 5 C 1.39963 * 119.87022 * 180.27616 * 4 3 2 6 6 C 1.46932 * 120.11075 * 179.77024 * 5 4 3 7 7 C 1.35148 * 120.00410 * 313.25082 * 6 5 4 8 8 C 1.41797 * 119.99716 * 347.95743 * 7 6 5 9 9 O 1.21781 * 119.99589 * 352.64941 * 8 7 6 10 10 N 1.34772 * 120.00307 * 172.65438 * 8 7 6 11 11 C 1.36744 * 120.00383 * 173.93363 * 10 8 7 12 12 H 1.08004 * 119.99685 * 23.67923 * 11 10 8 13 13 C 1.39087 * 120.00494 * 203.67936 * 11 10 8 14 14 N 1.31343 * 119.99662 * 2.35294 * 13 11 10 15 15 Si 1.86803 * 120.00220 * 182.34959 * 13 11 10 16 16 H 1.48503 * 109.46780 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.46758 * 299.99815 * 15 13 11 18 18 H 1.48495 * 109.46950 * 60.00074 * 15 13 11 19 19 C 1.46502 * 119.99940 * 353.93369 * 10 8 7 20 20 C 1.52996 * 117.49886 * 310.80934 * 19 10 8 21 21 C 1.52994 * 117.49993 * 242.18264 * 19 10 8 22 22 C 1.39935 * 119.77773 * 359.49614 * 5 4 3 23 23 C 1.38316 * 120.03834 * 0.22463 * 22 5 4 24 24 C 1.39177 * 120.02386 * 359.96839 * 23 22 5 25 25 O 1.36093 * 120.71911 * 180.20741 * 24 23 22 26 26 C 1.43155 * 116.72729 * 342.66403 * 25 24 23 27 27 C 1.53472 * 108.23230 * 46.35237 * 26 25 24 28 28 O 1.36153 * 119.22571 * 179.82391 * 23 22 5 29 29 H 1.08990 * 109.47470 * 299.99846 * 1 2 3 30 30 H 1.09000 * 109.47210 * 60.00642 * 1 2 3 31 31 H 1.09007 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.06582 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.99926 * 133.25085 * 6 5 4 34 34 H 1.08001 * 120.00719 * 167.95278 * 7 6 5 35 35 H 0.97006 * 119.99991 * 180.02562 * 14 13 11 36 36 H 1.08998 * 115.54826 * 96.50846 * 19 10 8 37 37 H 1.09003 * 117.50015 * 359.97438 * 20 19 10 38 38 H 1.09004 * 117.50160 * 145.01954 * 20 19 10 39 39 H 1.09004 * 117.49752 * 214.97602 * 21 19 10 40 40 H 1.08998 * 117.50242 * 359.97438 * 21 19 10 41 41 H 1.07997 * 119.98213 * 180.24863 * 22 5 4 42 42 H 1.09001 * 109.71732 * 286.66300 * 26 25 24 43 43 H 1.09008 * 109.71209 * 166.03117 * 26 25 24 44 44 H 1.09006 * 109.70661 * 180.50330 * 27 26 25 45 45 H 1.08992 * 109.71491 * 59.86974 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3687 0.0066 5 6 1.9277 3.6156 0.0007 6 6 1.1302 4.8497 0.0025 7 6 0.0853 4.9804 -0.8446 8 6 -0.0904 4.0521 -1.9020 9 8 0.7682 3.2192 -2.1300 10 7 -1.2076 4.0917 -2.6548 11 6 -1.3234 3.2810 -3.7499 12 1 -0.7448 2.3711 -3.8117 13 6 -2.1861 3.6281 -4.7842 14 7 -2.8548 4.7573 -4.7305 15 14 -2.3936 2.4885 -6.2497 16 1 -3.3611 3.0835 -7.2063 17 1 -1.0827 2.3039 -6.9226 18 1 -2.9013 1.1726 -5.7853 19 6 -2.2981 5.0034 -2.2998 20 6 -2.7769 5.0002 -0.8467 21 6 -3.6496 4.3824 -1.9411 22 6 3.3254 3.6830 -0.0011 23 6 4.0746 2.5203 -0.0018 24 6 3.4389 1.2822 0.0000 25 8 4.1622 0.1294 0.0036 26 6 5.5388 0.2318 -0.3756 27 6 6.1538 1.4258 0.3669 28 8 5.4335 2.6051 -0.0072 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2134 2.3114 0.0121 33 1 1.3791 5.6524 0.6809 34 1 -0.6158 5.7917 -0.7162 35 1 -3.4568 4.9992 -5.4516 36 1 -2.3067 5.9553 -2.8307 37 1 -2.2808 4.3195 -0.1548 38 1 -3.1005 5.9502 -0.4213 39 1 -4.5473 4.9260 -2.2357 40 1 -3.7275 3.2956 -1.9696 41 1 3.8194 4.6433 -0.0015 42 1 5.6131 0.3900 -1.4515 43 1 6.0649 -0.6825 -0.1008 44 1 7.2023 1.5315 0.0882 45 1 6.0726 1.2712 1.4428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491202821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:04 Heat of formation + Delta-G solvation = -56.205150 kcal Electronic energy + Delta-G solvation = -31296.657030 eV Core-core repulsion = 27054.558645 eV Total energy + Delta-G solvation = -4242.098385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24786 -40.95286 -40.14822 -38.53317 -37.98682 -37.29174 -35.16115 -33.99793 -32.98936 -31.58784 -30.87090 -29.31987 -28.25945 -27.23141 -25.82552 -24.27404 -23.22596 -23.04670 -22.73698 -21.66252 -20.15969 -19.38191 -18.83080 -18.56959 -18.36630 -17.58650 -17.37435 -16.94128 -16.84418 -16.28074 -16.01008 -15.98115 -15.87466 -15.69397 -15.31019 -15.19149 -14.84072 -14.65128 -14.26533 -14.19120 -13.82964 -13.71865 -13.17984 -13.07009 -12.98629 -12.80913 -12.58206 -12.44121 -12.24152 -12.18268 -12.16196 -12.02883 -11.76103 -11.54918 -11.45682 -11.03172 -10.67091 -10.20659 -10.10828 -9.63836 -8.96236 -8.61044 -8.25700 -5.88657 -0.16912 0.45250 0.87143 1.37478 1.40062 1.46264 2.06408 2.21640 2.25889 2.41419 2.64035 2.81144 3.06567 3.22569 3.27166 3.42088 3.82018 3.85359 3.96488 4.10388 4.14273 4.20926 4.24188 4.27126 4.29796 4.37176 4.45133 4.45625 4.55226 4.60655 4.62622 4.64647 4.80109 4.87530 4.95718 5.09972 5.14822 5.25638 5.38030 5.42212 5.44939 5.56563 5.60578 5.71858 5.88717 6.15338 6.19446 6.57872 6.61143 7.25382 7.55371 8.17370 8.71692 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.003603 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.207163 B = 7770.208385 C = 8372.163273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.327 6.327 3 C 0.102 3.898 4 C -0.130 4.130 5 C -0.007 4.007 6 C -0.051 4.051 7 C -0.183 4.183 8 C 0.457 3.543 9 O -0.614 6.614 10 N -0.425 5.425 11 C -0.332 4.332 12 H 0.065 0.935 13 C 0.010 3.990 14 N -0.876 5.876 15 Si 0.975 3.025 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.112 3.888 20 C -0.179 4.179 21 C -0.156 4.156 22 C -0.144 4.144 23 C 0.069 3.931 24 C -0.001 4.001 25 O -0.320 6.320 26 C 0.010 3.990 27 C 0.018 3.982 28 O -0.316 6.316 29 H 0.066 0.934 30 H 0.032 0.968 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.179 0.821 34 H 0.152 0.848 35 H 0.272 0.728 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.153 0.847 42 H 0.066 0.934 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.330 -1.152 12.998 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.241 6.241 3 C 0.057 3.943 4 C -0.149 4.149 5 C -0.008 4.008 6 C -0.072 4.072 7 C -0.204 4.204 8 C 0.251 3.749 9 O -0.503 6.503 10 N -0.142 5.142 11 C -0.460 4.460 12 H 0.083 0.917 13 C -0.194 4.194 14 N -0.513 5.513 15 Si 0.800 3.200 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.007 3.993 20 C -0.216 4.216 21 C -0.194 4.194 22 C -0.163 4.163 23 C 0.024 3.976 24 C -0.046 4.046 25 O -0.235 6.235 26 C -0.065 4.065 27 C -0.057 4.057 28 O -0.231 6.231 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.196 0.804 34 H 0.170 0.830 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.147 0.853 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.171 0.829 42 H 0.084 0.916 43 H 0.173 0.827 44 H 0.176 0.824 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.667 -1.673 12.704 15.469 hybrid contribution -0.580 -0.723 -1.539 1.796 sum 8.087 -2.396 11.165 13.993 Atomic orbital electron populations 1.23163 0.77190 1.05099 1.01063 1.86021 1.22495 1.26268 1.89306 1.18177 0.89263 0.85420 1.01472 1.20893 0.98934 0.90957 1.04148 1.18583 0.92285 0.93239 0.96687 1.22494 0.92133 0.94918 0.97665 1.22456 1.00119 1.01851 0.95938 1.17714 0.82264 0.87817 0.87145 1.90746 1.43820 1.41581 1.74133 1.43333 1.13014 1.34234 1.23612 1.19380 1.25808 1.04173 0.96679 0.91678 1.25864 0.95987 0.97650 0.99863 1.69913 1.26375 1.21651 1.33370 0.85276 0.77835 0.78603 0.78302 1.19210 1.20923 1.19762 1.21172 0.88417 0.94805 0.94911 1.23634 1.03249 1.03725 0.91038 1.22696 0.95193 0.98861 1.02680 1.20538 0.91830 0.97098 1.06811 1.18377 0.83534 0.91997 1.03699 1.18194 0.88830 0.85947 1.11629 1.86291 1.24098 1.28242 1.84902 1.23961 0.79884 1.02789 0.99887 1.23964 0.98146 0.83099 1.00489 1.86279 1.13764 1.38153 1.84879 0.91536 0.94884 0.85641 0.86380 0.80434 0.83026 0.91827 0.88134 0.89430 0.85275 0.88605 0.91957 0.82894 0.91597 0.82669 0.82436 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.81 113.37 1.11 2.07 16 2 O -0.33 -12.95 10.24 -78.78 -0.81 -13.75 16 3 C 0.10 4.20 6.69 22.53 0.15 4.35 16 4 C -0.13 -5.23 5.78 22.66 0.13 -5.10 16 5 C -0.01 -0.27 4.32 -20.17 -0.09 -0.36 16 6 C -0.05 -1.59 9.77 23.84 0.23 -1.35 16 7 C -0.18 -6.61 7.82 22.44 0.18 -6.43 16 8 C 0.46 21.93 6.38 85.12 0.54 22.48 16 9 O -0.61 -33.65 12.05 -4.61 -0.06 -33.71 16 10 N -0.43 -21.40 2.93 -622.95 -1.82 -23.22 16 11 C -0.33 -18.66 9.18 84.13 0.77 -17.88 16 12 H 0.07 4.00 7.35 -2.91 -0.02 3.97 16 13 C 0.01 0.53 5.27 84.97 0.45 0.97 16 14 N -0.88 -44.61 10.20 21.69 0.22 -44.39 16 15 Si 0.97 42.98 29.55 68.60 2.03 45.00 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.11 4.73 3.33 44.99 0.15 4.88 16 20 C -0.18 -5.67 8.11 30.59 0.25 -5.43 16 21 C -0.16 -6.03 9.47 30.59 0.29 -5.74 16 22 C -0.14 -4.95 9.70 22.70 0.22 -4.73 16 23 C 0.07 2.44 6.48 22.51 0.15 2.59 16 24 C 0.00 -0.03 6.52 22.78 0.15 0.12 16 25 O -0.32 -11.01 10.16 -70.82 -0.72 -11.73 16 26 C 0.01 0.22 7.26 72.14 0.52 0.74 16 27 C 0.02 0.34 7.26 72.14 0.52 0.87 16 28 O -0.32 -9.26 10.41 -83.08 -0.87 -10.12 16 29 H 0.07 1.88 7.64 -2.39 -0.02 1.86 16 30 H 0.03 1.26 7.67 -2.39 -0.02 1.24 16 31 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 32 H 0.12 4.86 5.58 -2.91 -0.02 4.84 16 33 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.15 4.60 5.88 -2.91 -0.02 4.59 16 35 H 0.27 13.12 8.31 -92.70 -0.77 12.35 16 36 H 0.10 4.55 7.47 -2.39 -0.02 4.53 16 37 H 0.09 2.79 7.34 -2.39 -0.02 2.77 16 38 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 40 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.16 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.16 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -74.96 368.52 4.73 -70.24 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 1.02 Total: 29.64 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 5.73 Total: -7.96 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -1.60 Total: -67.61 kcal Atomic # 8 Polarization: -66.87 SS G_CDS: -2.45 Total: -69.31 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -74.96 4.73 -70.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491202821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.030 kcal (2) G-P(sol) polarization free energy of solvation -74.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds