Wall clock time and date at job start Wed Apr 1 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35994 * 116.99925 * 2 1 4 4 C 1.38131 * 119.89283 * 0.02562 * 3 2 1 5 5 C 1.39957 * 119.87127 * 180.24426 * 4 3 2 6 6 C 1.46938 * 120.11082 * 179.79153 * 5 4 3 7 7 C 1.35148 * 119.99794 * 359.97438 * 6 5 4 8 8 C 1.41797 * 120.00108 * 179.97438 * 7 6 5 9 9 O 1.21781 * 119.99917 * 354.33159 * 8 7 6 10 10 N 1.34777 * 120.00425 * 174.32521 * 8 7 6 11 11 C 1.36741 * 120.00072 * 184.52220 * 10 8 7 12 12 H 1.07996 * 120.00316 * 18.38478 * 11 10 8 13 13 C 1.39095 * 119.99848 * 198.37205 * 11 10 8 14 14 N 1.31340 * 120.00126 * 9.14622 * 13 11 10 15 15 Si 1.86801 * 119.99974 * 189.13925 * 13 11 10 16 16 H 1.48499 * 109.46915 * 60.00315 * 15 13 11 17 17 H 1.48499 * 109.47161 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47222 * 300.00440 * 15 13 11 19 19 C 1.46499 * 119.99828 * 4.53051 * 10 8 7 20 20 C 1.53000 * 117.49678 * 308.51072 * 19 10 8 21 21 C 1.53001 * 117.49964 * 239.85445 * 19 10 8 22 22 C 1.39929 * 119.78013 * 359.54058 * 5 4 3 23 23 C 1.38325 * 120.03567 * 0.51855 * 22 5 4 24 24 C 1.39162 * 120.02557 * 359.65631 * 23 22 5 25 25 O 1.36096 * 120.72212 * 180.25763 * 24 23 22 26 26 C 1.43146 * 116.74633 * 342.75745 * 25 24 23 27 27 C 1.53480 * 108.24522 * 46.26122 * 26 25 24 28 28 O 1.36160 * 119.22150 * 179.55841 * 23 22 5 29 29 H 1.08997 * 109.47149 * 60.00284 * 1 2 3 30 30 H 1.09009 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47706 * 299.99745 * 1 2 3 32 32 H 1.07996 * 120.06285 * 359.96048 * 4 3 2 33 33 H 1.08003 * 120.00497 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.00392 * 0.02562 * 7 6 5 35 35 H 0.96998 * 120.00229 * 180.02562 * 14 13 11 36 36 H 1.09000 * 115.55417 * 94.17659 * 19 10 8 37 37 H 1.09001 * 117.49871 * 0.02562 * 20 19 10 38 38 H 1.08998 * 117.50049 * 145.01783 * 20 19 10 39 39 H 1.08994 * 117.49647 * 214.98018 * 21 19 10 40 40 H 1.08995 * 117.49603 * 359.96909 * 21 19 10 41 41 H 1.08003 * 119.98827 * 180.28029 * 22 5 4 42 42 H 1.08996 * 109.71281 * 165.94620 * 26 25 24 43 43 H 1.08998 * 109.70821 * 286.53304 * 26 25 24 44 44 H 1.08993 * 109.71054 * 59.86731 * 27 26 25 45 45 H 1.08999 * 109.71214 * 180.50624 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2919 2.3688 0.0005 5 6 1.9277 3.6156 -0.0046 6 6 1.1303 4.8497 -0.0087 7 6 -0.2195 4.7820 -0.0080 8 6 -0.9892 5.9729 -0.0114 9 8 -0.4381 7.0543 0.0892 10 7 -2.3305 5.9083 -0.1261 11 6 -3.0647 7.0578 -0.2225 12 1 -2.5843 7.9835 -0.5032 13 6 -4.4303 7.0349 0.0408 14 7 -4.9824 5.9590 0.5533 15 14 -5.4791 8.5345 -0.3344 16 1 -5.3984 8.8446 -1.7844 17 1 -6.8903 8.2566 0.0351 18 1 -4.9822 9.6946 0.4483 19 6 -3.0019 4.6063 -0.1474 20 6 -2.4862 3.5617 -1.1392 21 6 -3.8270 4.2571 -1.3876 22 6 3.3254 3.6830 -0.0006 23 6 4.0746 2.5202 -0.0023 24 6 3.4390 1.2822 -0.0009 25 8 4.1622 0.1293 0.0027 26 6 5.5394 0.2316 -0.3741 27 6 6.1534 1.4261 0.3687 28 8 5.4336 2.6051 -0.0075 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2134 2.3114 0.0003 33 1 1.6227 5.8109 -0.0123 34 1 -0.7121 3.8209 -0.0040 35 1 -5.9347 5.9429 0.7366 36 1 -3.3656 4.2491 0.8161 37 1 -1.6471 3.8430 -1.7756 38 1 -2.5109 2.5173 -0.8285 39 1 -4.7333 3.6700 -1.2401 40 1 -3.8706 4.9963 -2.1874 41 1 3.8195 4.6433 0.0000 42 1 6.0650 -0.6824 -0.0979 43 1 5.6155 0.3885 -1.4501 44 1 6.0703 1.2722 1.4445 45 1 7.2023 1.5317 0.0916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491202826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:07 Heat of formation + Delta-G solvation = -47.792027 kcal Electronic energy + Delta-G solvation = -30196.903280 eV Core-core repulsion = 25955.169715 eV Total energy + Delta-G solvation = -4241.733565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36874 -39.44581 -39.04066 -37.45870 -36.86291 -36.12468 -33.60183 -32.76952 -31.21440 -30.61017 -29.95689 -28.30728 -27.32618 -25.70320 -24.83020 -23.03857 -22.15299 -21.54201 -21.45710 -20.31225 -18.79074 -18.43673 -17.67899 -17.36939 -17.04253 -16.50936 -16.02007 -15.76426 -15.36834 -15.19091 -15.09678 -14.90023 -14.51294 -14.38139 -14.35491 -13.96793 -13.58584 -13.30140 -13.04619 -12.92403 -12.59865 -12.33995 -12.12962 -11.77109 -11.48634 -11.40509 -11.28003 -11.15483 -11.06713 -10.95191 -10.83088 -10.63906 -10.50797 -10.44251 -9.92887 -9.46613 -9.11978 -8.93247 -8.42108 -8.22709 -7.88369 -7.54158 -6.43994 -3.89696 0.76432 1.33475 2.31820 2.87191 3.05275 3.15990 3.18024 3.21745 3.22568 3.77834 4.02449 4.07594 4.42426 4.58149 4.59777 4.66020 4.71503 4.73292 4.87568 4.94316 5.09716 5.14950 5.16528 5.19332 5.23456 5.31346 5.36740 5.48752 5.69225 5.75631 5.78675 5.94575 6.01379 6.07534 6.15656 6.23542 6.31931 6.54093 6.65891 6.73797 6.84081 6.90785 7.00704 7.11597 7.15889 7.42450 7.48141 8.00421 8.39917 9.09764 9.30274 9.93417 10.56947 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.002627 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.421606 B =10654.234645 C =11808.877007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.140 3.860 4 C -0.202 4.202 5 C 0.006 3.994 6 C -0.093 4.093 7 C -0.149 4.149 8 C 0.459 3.541 9 O -0.599 6.599 10 N -0.404 5.404 11 C -0.296 4.296 12 H 0.104 0.896 13 C 0.035 3.965 14 N -0.861 5.861 15 Si 0.928 3.072 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.271 1.271 19 C 0.135 3.865 20 C -0.231 4.231 21 C -0.144 4.144 22 C -0.140 4.140 23 C 0.087 3.913 24 C 0.006 3.994 25 O -0.297 6.297 26 C 0.020 3.980 27 C 0.020 3.980 28 O -0.303 6.303 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.271 0.729 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.140 0.860 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.348 -14.786 -1.619 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.094 3.906 4 C -0.221 4.221 5 C 0.005 3.995 6 C -0.114 4.114 7 C -0.169 4.169 8 C 0.252 3.748 9 O -0.487 6.487 10 N -0.119 5.119 11 C -0.424 4.424 12 H 0.122 0.878 13 C -0.171 4.171 14 N -0.499 5.499 15 Si 0.755 3.245 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.196 1.196 19 C 0.030 3.970 20 C -0.269 4.269 21 C -0.182 4.182 22 C -0.159 4.159 23 C 0.042 3.958 24 C -0.039 4.039 25 O -0.212 6.212 26 C -0.056 4.056 27 C -0.056 4.056 28 O -0.218 6.218 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.158 0.842 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.450 -14.528 -1.503 19.855 hybrid contribution -0.827 0.535 -0.167 0.999 sum 12.623 -13.993 -1.670 18.919 Atomic orbital electron populations 1.23145 0.78116 1.04005 1.01965 1.86126 1.21350 1.25793 1.88741 1.17937 0.88440 0.85178 0.99005 1.21314 1.00510 0.90591 1.09700 1.18583 0.91754 0.92722 0.96436 1.22001 0.93567 0.95766 1.00101 1.22637 0.94856 0.99552 0.99895 1.16692 0.82503 0.89308 0.86272 1.90660 1.70606 1.30479 1.56961 1.43260 1.04571 1.04965 1.59134 1.19735 0.90273 0.88925 1.43488 0.87806 1.25362 0.97505 0.98393 0.95812 1.69864 1.12683 1.28023 1.39293 0.85952 0.78254 0.81150 0.79188 1.19778 1.20788 1.19619 1.21232 0.97440 0.83594 0.94782 1.23712 0.99479 0.97646 1.06064 1.22773 0.92853 1.01640 1.00910 1.20479 0.92073 0.96642 1.06741 1.18389 0.82761 0.92235 1.02424 1.18042 0.88781 0.85128 1.11935 1.86359 1.21838 1.28136 1.84823 1.23586 0.81612 1.00454 0.99951 1.23636 0.97044 0.84730 1.00198 1.86350 1.14686 1.36276 1.84463 0.92239 0.88175 0.92239 0.83872 0.84844 0.85715 0.91860 0.86619 0.89233 0.89312 0.89481 0.89518 0.84242 0.86307 0.90720 0.90447 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.20 10.24 -35.17 -0.36 -4.56 16 3 C 0.14 2.05 6.69 -39.17 -0.26 1.79 16 4 C -0.20 -2.94 8.39 -38.98 -0.33 -3.27 16 5 C 0.01 0.09 5.87 -105.10 -0.62 -0.53 16 6 C -0.09 -1.65 9.41 -37.16 -0.35 -2.00 16 7 C -0.15 -2.92 7.40 -39.32 -0.29 -3.21 16 8 C 0.46 11.34 7.32 -14.90 -0.11 11.23 16 9 O -0.60 -16.86 15.80 5.12 0.08 -16.78 16 10 N -0.40 -10.11 2.93 -110.89 -0.32 -10.44 16 11 C -0.30 -7.99 9.22 -15.04 -0.14 -8.13 16 12 H 0.10 2.95 7.36 -52.49 -0.39 2.57 16 13 C 0.03 0.88 5.06 -17.44 -0.09 0.79 16 14 N -0.86 -21.35 10.08 55.50 0.56 -20.79 16 15 Si 0.93 19.99 29.56 -169.99 -5.03 14.96 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C 0.13 2.87 3.57 -67.93 -0.24 2.63 16 20 C -0.23 -3.90 7.83 -26.70 -0.21 -4.11 16 21 C -0.14 -2.78 8.96 -26.70 -0.24 -3.02 16 22 C -0.14 -2.04 9.70 -38.92 -0.38 -2.42 16 23 C 0.09 1.23 6.48 -39.21 -0.25 0.97 16 24 C 0.01 0.09 6.52 -38.79 -0.25 -0.16 16 25 O -0.30 -3.92 10.16 -44.93 -0.46 -4.37 16 26 C 0.02 0.17 7.26 37.41 0.27 0.44 16 27 C 0.02 0.16 7.26 37.41 0.27 0.43 16 28 O -0.30 -3.74 10.41 -33.02 -0.34 -4.09 16 29 H 0.06 0.55 7.65 -51.93 -0.40 0.16 16 30 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 32 H 0.14 1.91 4.37 -52.49 -0.23 1.68 16 33 H 0.13 2.49 7.46 -52.48 -0.39 2.10 16 34 H 0.13 2.15 3.16 -52.49 -0.17 1.98 16 35 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.12 2.57 7.66 -51.93 -0.40 2.17 16 37 H 0.09 1.55 7.07 -51.93 -0.37 1.18 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -32.29 371.16 -8.17 -40.47 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.67 Total: 7.37 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.22 Total: -7.36 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.23 Total: -31.23 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.08 Total: -29.80 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.29 -8.17 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491202826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.324 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds